Wall clock time and date at job start Tue Mar 31 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47020 * 2 1 4 4 H 1.08995 * 110.27551 * 52.90422 * 3 2 1 5 5 C 1.54946 * 110.31046 * 175.00320 * 3 2 1 6 6 C 1.55299 * 100.94656 * 155.45511 * 5 3 2 7 7 C 1.54388 * 102.25190 * 325.86610 * 6 5 3 8 8 H 1.08998 * 109.82604 * 261.75407 * 7 6 5 9 9 C 1.50695 * 109.83008 * 140.86819 * 7 6 5 10 10 O 1.21279 * 119.99857 * 244.99452 * 9 7 6 11 11 N 1.34769 * 120.00167 * 65.00041 * 9 7 6 12 12 C 1.39472 * 120.00099 * 184.69956 * 11 9 7 13 13 C 1.38601 * 119.57898 * 185.34818 * 12 11 9 14 14 C 1.40811 * 118.79513 * 179.97438 * 13 12 11 15 15 C 1.41533 * 120.99989 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00067 * 333.69476 * 15 14 13 17 17 C 1.40034 * 120.00675 * 153.69244 * 15 14 13 18 18 N 1.30736 * 120.00698 * 160.37641 * 17 15 14 19 19 Si 1.86807 * 119.99506 * 340.38727 * 17 15 14 20 20 H 1.48496 * 109.47258 * 92.73969 * 19 17 15 21 21 H 1.48508 * 109.46831 * 212.73872 * 19 17 15 22 22 H 1.48503 * 109.47043 * 332.73422 * 19 17 15 23 23 C 1.41181 * 118.00581 * 359.97438 * 14 13 12 24 24 C 1.37587 * 119.01518 * 0.27492 * 23 14 13 25 25 N 1.32079 * 121.10927 * 359.42827 * 24 23 14 26 26 O 1.43234 * 107.58561 * 21.35515 * 7 6 5 27 27 H 1.09002 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47145 * 299.99766 * 1 2 3 29 29 H 1.08995 * 109.47208 * 60.00699 * 1 2 3 30 30 H 1.08998 * 109.47323 * 239.99469 * 2 1 3 31 31 H 1.08998 * 109.47320 * 119.99807 * 2 1 3 32 32 H 1.09005 * 111.12787 * 37.53233 * 5 3 2 33 33 H 1.09000 * 111.15814 * 273.39477 * 5 3 2 34 34 H 1.09000 * 110.85176 * 207.67253 * 6 5 3 35 35 H 1.09000 * 111.02403 * 84.13178 * 6 5 3 36 36 H 0.96997 * 120.00488 * 4.70159 * 11 9 7 37 37 H 1.07994 * 120.60434 * 359.95598 * 13 12 11 38 38 H 0.97001 * 120.00745 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.48977 * 180.02562 * 23 14 13 40 40 H 1.07996 * 119.44399 * 179.70267 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0042 0.8155 5 6 3.5841 1.4671 0.1266 6 6 3.9114 2.8396 -0.5222 7 6 2.8317 2.9486 -1.6205 8 1 3.2494 2.6464 -2.5808 9 6 2.3298 4.3670 -1.7049 10 8 1.1777 4.6203 -1.4234 11 7 3.1612 5.3540 -2.0934 12 6 2.7260 6.6790 -2.0778 13 6 3.5471 7.6748 -2.5830 14 6 3.0910 9.0068 -2.5595 15 6 3.8911 10.0602 -3.0626 16 1 4.9667 9.9630 -3.0747 17 6 3.2884 11.2287 -3.5447 18 7 3.9859 12.3296 -3.6477 19 14 1.4873 11.2144 -4.0403 20 1 0.6523 11.6269 -2.8838 21 1 1.2762 12.1601 -5.1657 22 1 1.1019 9.8448 -4.4658 23 6 1.8115 9.2599 -2.0191 24 6 1.0705 8.2060 -1.5361 25 7 1.5325 6.9695 -1.5817 26 8 1.7569 2.0735 -1.2590 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.0373 0.6495 -0.4340 33 1 3.8936 1.4426 1.1714 34 1 4.9100 2.8339 -0.9591 35 1 3.8112 3.6482 0.2018 36 1 4.0623 5.1429 -2.3839 37 1 4.5191 7.4336 -2.9870 38 1 3.5684 13.1391 -3.9813 39 1 1.4219 10.2665 -1.9816 40 1 0.0929 8.3924 -1.1168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532181179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:39 Heat of formation + Delta-G solvation = -52.296328 kcal Electronic energy + Delta-G solvation = -22654.457547 eV Core-core repulsion = 19240.919415 eV Total energy + Delta-G solvation = -3413.538132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43101 -39.10843 -37.64999 -34.51848 -33.81772 -33.67252 -32.28555 -31.31122 -29.61429 -28.15195 -26.01537 -24.55692 -22.31752 -21.98890 -21.82124 -21.00499 -19.56345 -18.16603 -17.51052 -16.63645 -16.14608 -15.98662 -15.46977 -14.70317 -14.40263 -14.25371 -14.14852 -14.07757 -13.55808 -13.34321 -13.10861 -13.05826 -12.87161 -12.58217 -12.05122 -11.92989 -11.69385 -11.56688 -11.22435 -11.20088 -11.03533 -10.87858 -10.81558 -10.69874 -10.12876 -9.86554 -9.77474 -9.38467 -9.16273 -8.29598 -7.85839 -7.25581 -7.10553 -4.75331 2.28348 2.60316 3.05528 3.12313 3.16466 3.22010 3.31575 3.81385 3.89789 4.22583 4.42914 4.54556 4.65629 4.80982 4.92654 4.97580 5.11112 5.23794 5.26996 5.41700 5.47181 5.54814 5.60269 5.69377 5.76761 5.79231 5.84110 6.02937 6.19114 6.31459 6.33795 6.45958 6.55158 6.83467 6.99524 7.10865 7.16620 7.59403 7.74997 7.98646 8.19093 8.41805 8.61652 8.70869 9.45250 9.89941 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038726 B = 0.003299 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.848909 B = 8485.238578 C = 8958.400052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.076 3.924 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.147 4.147 7 C 0.067 3.933 8 H 0.103 0.897 9 C 0.485 3.515 10 O -0.459 6.459 11 N -0.661 5.661 12 C 0.362 3.638 13 C -0.295 4.295 14 C 0.128 3.872 15 C -0.438 4.438 16 H 0.094 0.906 17 C 0.088 3.912 18 N -0.795 5.795 19 Si 0.918 3.082 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.247 1.247 23 C -0.307 4.307 24 C 0.140 3.860 25 N -0.559 5.559 26 O -0.345 6.345 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.407 0.593 37 H 0.109 0.891 38 H 0.289 0.711 39 H 0.110 0.890 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -18.336 4.667 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.091 0.909 5 C -0.187 4.187 6 C -0.185 4.185 7 C 0.005 3.995 8 H 0.121 0.879 9 C 0.268 3.732 10 O -0.326 6.326 11 N -0.309 5.309 12 C 0.136 3.864 13 C -0.321 4.321 14 C 0.120 3.880 15 C -0.467 4.467 16 H 0.112 0.888 17 C -0.134 4.134 18 N -0.418 5.418 19 Si 0.744 3.256 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.170 1.170 23 C -0.330 4.330 24 C -0.014 4.014 25 N -0.279 5.279 26 O -0.263 6.263 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.242 0.758 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.351 -18.710 5.048 19.382 hybrid contribution 0.595 0.988 -0.637 1.318 sum 0.244 -17.721 4.411 18.264 Atomic orbital electron populations 1.21733 0.95142 1.01294 1.02751 1.21638 0.97044 0.94493 1.02419 1.23125 0.93982 0.93939 0.87141 0.90932 1.23312 0.95981 0.97198 1.02230 1.23107 0.98916 0.98611 0.97831 1.22618 0.87956 0.88819 1.00087 0.87917 1.21014 0.86853 0.86627 0.78711 1.90800 1.16508 1.82496 1.42830 1.43470 1.16596 1.04800 1.66019 1.18080 0.91262 0.82777 0.94241 1.21145 1.02496 0.92328 1.16104 1.17641 0.90742 0.91681 0.87946 1.19471 0.96185 0.96357 1.34718 0.88841 1.26209 1.01087 0.93810 0.92267 1.69648 1.39794 1.00608 1.31771 0.86255 0.81279 0.79999 0.78042 1.19223 1.21781 1.16982 1.21949 0.99504 0.99087 1.12505 1.21822 0.97590 0.87307 0.94644 1.67294 1.13777 1.21775 1.25033 1.88523 1.41945 1.58179 1.37639 0.92934 0.92760 0.91754 0.91220 0.90829 0.89978 0.89637 0.88996 0.89766 0.75811 0.87331 0.90064 0.87250 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.85 37.16 0.37 -1.09 16 2 C -0.12 -1.04 5.67 -26.73 -0.15 -1.19 16 3 C 0.08 0.83 3.40 -25.70 -0.09 0.74 16 4 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.15 -1.22 6.57 -24.49 -0.16 -1.38 16 6 C -0.15 -1.40 6.52 -24.79 -0.16 -1.56 16 7 C 0.07 0.86 3.95 -27.16 -0.11 0.75 16 8 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 9 C 0.48 8.70 6.98 -10.99 -0.08 8.62 16 10 O -0.46 -10.60 14.81 -14.10 -0.21 -10.81 16 11 N -0.66 -11.56 5.36 -11.49 -0.06 -11.62 16 12 C 0.36 8.13 7.40 -154.70 -1.15 6.98 16 13 C -0.29 -6.76 9.73 -38.48 -0.37 -7.13 16 14 C 0.13 3.23 5.20 -106.55 -0.55 2.68 16 15 C -0.44 -11.47 9.63 -37.65 -0.36 -11.83 16 16 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 17 C 0.09 2.23 5.42 -17.35 -0.09 2.14 16 18 N -0.79 -20.37 13.92 55.55 0.77 -19.60 16 19 Si 0.92 20.57 24.52 -169.99 -4.17 16.40 16 20 H -0.27 -5.77 6.53 56.52 0.37 -5.40 16 21 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.25 -5.80 6.95 56.52 0.39 -5.41 16 23 C -0.31 -7.51 7.38 -38.70 -0.29 -7.80 16 24 C 0.14 3.32 11.15 -17.68 -0.20 3.12 16 25 N -0.56 -13.80 7.88 -12.52 -0.10 -13.90 16 26 O -0.34 -4.98 10.02 -54.89 -0.55 -5.53 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.74 7.99 -51.93 -0.42 0.33 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 36 H 0.41 5.29 8.70 -40.82 -0.36 4.94 16 37 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 39 H 0.11 2.61 4.39 -52.49 -0.23 2.38 16 40 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -32.72 330.54 -8.38 -41.09 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.65 Total: 5.94 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -3.39 Total: -6.96 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.61 Total: -45.12 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.76 Total: -16.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.17 Total: 16.40 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.72 -8.38 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532181179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.202 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds