Wall clock time and date at job start Tue Mar 31 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47020 * 2 1 4 4 H 1.08995 * 110.27551 * 52.90422 * 3 2 1 5 5 C 1.54946 * 110.31046 * 175.00320 * 3 2 1 6 6 C 1.55299 * 100.94656 * 155.45511 * 5 3 2 7 7 C 1.54388 * 102.25190 * 325.86610 * 6 5 3 8 8 H 1.08998 * 109.82604 * 261.75407 * 7 6 5 9 9 C 1.50695 * 109.83008 * 140.86819 * 7 6 5 10 10 O 1.21279 * 119.99857 * 244.99452 * 9 7 6 11 11 N 1.34769 * 120.00167 * 65.00041 * 9 7 6 12 12 C 1.39472 * 120.00099 * 184.69956 * 11 9 7 13 13 C 1.38601 * 119.57898 * 185.34818 * 12 11 9 14 14 C 1.40811 * 118.79513 * 179.97438 * 13 12 11 15 15 C 1.41533 * 120.99989 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00067 * 333.69476 * 15 14 13 17 17 C 1.40034 * 120.00675 * 153.69244 * 15 14 13 18 18 N 1.30736 * 120.00698 * 160.37641 * 17 15 14 19 19 Si 1.86807 * 119.99506 * 340.38727 * 17 15 14 20 20 H 1.48496 * 109.47258 * 92.73969 * 19 17 15 21 21 H 1.48508 * 109.46831 * 212.73872 * 19 17 15 22 22 H 1.48503 * 109.47043 * 332.73422 * 19 17 15 23 23 C 1.41181 * 118.00581 * 359.97438 * 14 13 12 24 24 C 1.37587 * 119.01518 * 0.27492 * 23 14 13 25 25 N 1.32079 * 121.10927 * 359.42827 * 24 23 14 26 26 O 1.43234 * 107.58561 * 21.35515 * 7 6 5 27 27 H 1.09002 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47145 * 299.99766 * 1 2 3 29 29 H 1.08995 * 109.47208 * 60.00699 * 1 2 3 30 30 H 1.08998 * 109.47323 * 239.99469 * 2 1 3 31 31 H 1.08998 * 109.47320 * 119.99807 * 2 1 3 32 32 H 1.09005 * 111.12787 * 37.53233 * 5 3 2 33 33 H 1.09000 * 111.15814 * 273.39477 * 5 3 2 34 34 H 1.09000 * 110.85176 * 207.67253 * 6 5 3 35 35 H 1.09000 * 111.02403 * 84.13178 * 6 5 3 36 36 H 0.96997 * 120.00488 * 4.70159 * 11 9 7 37 37 H 1.07994 * 120.60434 * 359.95598 * 13 12 11 38 38 H 0.97001 * 120.00745 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.48977 * 180.02562 * 23 14 13 40 40 H 1.07996 * 119.44399 * 179.70267 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5845 2.0042 0.8155 5 6 3.5841 1.4671 0.1266 6 6 3.9114 2.8396 -0.5222 7 6 2.8317 2.9486 -1.6205 8 1 3.2494 2.6464 -2.5808 9 6 2.3298 4.3670 -1.7049 10 8 1.1777 4.6203 -1.4234 11 7 3.1612 5.3540 -2.0934 12 6 2.7260 6.6790 -2.0778 13 6 3.5471 7.6748 -2.5830 14 6 3.0910 9.0068 -2.5595 15 6 3.8911 10.0602 -3.0626 16 1 4.9667 9.9630 -3.0747 17 6 3.2884 11.2287 -3.5447 18 7 3.9859 12.3296 -3.6477 19 14 1.4873 11.2144 -4.0403 20 1 0.6523 11.6269 -2.8838 21 1 1.2762 12.1601 -5.1657 22 1 1.1019 9.8448 -4.4658 23 6 1.8115 9.2599 -2.0191 24 6 1.0705 8.2060 -1.5361 25 7 1.5325 6.9695 -1.5817 26 8 1.7569 2.0735 -1.2590 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.0373 0.6495 -0.4340 33 1 3.8936 1.4426 1.1714 34 1 4.9100 2.8339 -0.9591 35 1 3.8112 3.6482 0.2018 36 1 4.0623 5.1429 -2.3839 37 1 4.5191 7.4336 -2.9870 38 1 3.5684 13.1391 -3.9813 39 1 1.4219 10.2665 -1.9816 40 1 0.0929 8.3924 -1.1168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532181179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:38 Heat of formation + Delta-G solvation = -73.315750 kcal Electronic energy + Delta-G solvation = -22655.369018 eV Core-core repulsion = 19240.919415 eV Total energy + Delta-G solvation = -3414.449603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69753 -40.54576 -39.17687 -36.25816 -35.49159 -34.57627 -33.26827 -33.12156 -31.06629 -29.34788 -27.94071 -25.60287 -23.82744 -23.56730 -22.78266 -22.01181 -20.98754 -19.92547 -18.66552 -18.08663 -17.60875 -17.18486 -17.02207 -16.20552 -16.16130 -15.83711 -15.54757 -14.93399 -14.89987 -14.68267 -14.51494 -14.31433 -14.10567 -13.78994 -13.46109 -13.04895 -12.98695 -12.79881 -12.77286 -12.53963 -12.42373 -11.99793 -11.76765 -11.72877 -11.54331 -11.49561 -11.22101 -11.20996 -10.49524 -10.21813 -9.64424 -9.04466 -8.99232 -6.73800 0.50965 0.73089 1.25777 1.38887 1.45704 1.73567 1.87956 2.07860 2.63063 2.85536 3.37791 3.50273 3.55907 3.73374 3.97302 4.04779 4.15026 4.22657 4.35374 4.46419 4.46657 4.55192 4.61969 4.66931 4.73422 4.80908 4.86801 4.94847 5.00470 5.06920 5.14815 5.16832 5.24764 5.29024 5.40950 5.42617 5.69929 5.92398 6.06837 6.19804 6.46407 6.50536 6.67808 7.22168 7.68348 8.03112 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038726 B = 0.003299 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.848909 B = 8485.238578 C = 8958.400052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C 0.062 3.938 4 H 0.049 0.951 5 C -0.136 4.136 6 C -0.142 4.142 7 C 0.072 3.928 8 H 0.137 0.863 9 C 0.480 3.520 10 O -0.518 6.518 11 N -0.646 5.646 12 C 0.359 3.641 13 C -0.298 4.298 14 C 0.113 3.887 15 C -0.465 4.465 16 H 0.073 0.927 17 C 0.060 3.940 18 N -0.823 5.823 19 Si 0.965 3.035 20 H -0.254 1.254 21 H -0.272 1.272 22 H -0.266 1.266 23 C -0.319 4.319 24 C 0.134 3.866 25 N -0.581 5.581 26 O -0.375 6.375 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.429 0.571 37 H 0.131 0.869 38 H 0.300 0.700 39 H 0.114 0.886 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -20.544 4.818 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C 0.005 3.995 4 H 0.067 0.933 5 C -0.174 4.174 6 C -0.180 4.180 7 C 0.011 3.989 8 H 0.154 0.846 9 C 0.267 3.733 10 O -0.390 6.390 11 N -0.296 5.296 12 C 0.132 3.868 13 C -0.324 4.324 14 C 0.105 3.895 15 C -0.495 4.495 16 H 0.091 0.909 17 C -0.160 4.160 18 N -0.447 5.447 19 Si 0.789 3.211 20 H -0.179 1.179 21 H -0.198 1.198 22 H -0.190 1.190 23 C -0.342 4.342 24 C -0.020 4.020 25 N -0.301 5.301 26 O -0.294 6.294 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.083 0.917 36 H 0.268 0.732 37 H 0.148 0.852 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.535 -20.933 5.194 21.574 hybrid contribution 0.330 1.564 -0.629 1.717 sum 0.866 -19.369 4.565 19.919 Atomic orbital electron populations 1.21746 0.96341 1.01950 1.01082 1.21652 0.95990 0.93330 1.04028 1.23352 0.96372 0.94494 0.85239 0.93255 1.23321 0.93387 0.96984 1.03665 1.23170 0.99476 0.98853 0.96489 1.22797 0.88269 0.84859 1.02986 0.84568 1.22168 0.86022 0.88539 0.76605 1.90768 1.19142 1.83709 1.45369 1.43455 1.17768 1.02997 1.65375 1.18363 0.90491 0.84837 0.93091 1.21365 1.03445 0.91755 1.15805 1.17860 0.91217 0.92466 0.87989 1.19478 0.95421 0.97726 1.36838 0.90908 1.26753 1.03959 0.93333 0.91925 1.69644 1.41242 1.01270 1.32593 0.85538 0.77794 0.79160 0.78632 1.17922 1.19839 1.19048 1.22049 0.99543 0.99573 1.13037 1.22230 0.98527 0.86993 0.94226 1.67418 1.14905 1.22210 1.25557 1.88514 1.43424 1.58348 1.39083 0.91093 0.93378 0.94488 0.90412 0.88184 0.87493 0.87887 0.85288 0.91715 0.73163 0.85161 0.88899 0.86867 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.85 71.98 0.71 -2.14 16 2 C -0.11 -1.72 5.67 30.60 0.17 -1.55 16 3 C 0.06 1.26 3.40 31.26 0.11 1.37 16 4 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.14 -1.72 6.57 32.05 0.21 -1.51 16 6 C -0.14 -2.24 6.52 31.85 0.21 -2.04 16 7 C 0.07 1.69 3.95 30.32 0.12 1.81 16 8 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 9 C 0.48 16.85 6.98 87.66 0.61 17.46 16 10 O -0.52 -24.32 14.81 15.77 0.23 -24.08 16 11 N -0.65 -21.71 5.36 -308.67 -1.66 -23.36 16 12 C 0.36 15.93 7.40 132.75 0.98 16.92 16 13 C -0.30 -13.55 9.73 22.99 0.22 -13.33 16 14 C 0.11 5.73 5.20 -21.11 -0.11 5.62 16 15 C -0.46 -24.81 9.63 23.52 0.23 -24.58 16 16 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 17 C 0.06 3.04 5.42 85.29 0.46 3.50 16 18 N -0.82 -42.40 13.92 21.84 0.30 -42.10 16 19 Si 0.96 42.02 24.52 68.60 1.68 43.70 16 20 H -0.25 -10.48 6.53 99.48 0.65 -9.83 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.27 -12.37 6.95 99.48 0.69 -11.68 16 23 C -0.32 -15.58 7.38 22.84 0.17 -15.41 16 24 C 0.13 6.33 11.15 84.50 0.94 7.27 16 25 N -0.58 -28.67 7.88 -193.53 -1.53 -30.20 16 26 O -0.38 -10.46 10.02 -130.18 -1.30 -11.76 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.04 0.87 7.99 -2.39 -0.02 0.85 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 0.88 8.06 -2.38 -0.02 0.86 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.30 7.84 -2.39 -0.02 1.28 16 36 H 0.43 10.09 8.70 -92.71 -0.81 9.28 16 37 H 0.13 5.20 8.06 -2.91 -0.02 5.18 16 38 H 0.30 13.78 8.29 -92.71 -0.77 13.01 16 39 H 0.11 5.35 4.39 -2.91 -0.01 5.34 16 40 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -73.58 330.54 2.95 -70.63 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.18 Total: 23.78 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.04 Total: -6.61 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -2.88 Total: -95.66 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.07 Total: -35.84 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.68 Total: 43.70 kcal Total: -73.58 2.95 -70.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532181179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.685 kcal (2) G-P(sol) polarization free energy of solvation -73.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds