Wall clock time and date at job start Tue Mar 31 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47008 * 2 1 4 4 C 1.52999 * 109.47074 * 239.99950 * 2 1 3 5 5 C 1.50702 * 109.47068 * 60.00179 * 4 2 1 6 6 O 1.21273 * 119.99676 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99888 * 180.02562 * 5 4 2 8 8 C 1.39471 * 119.99825 * 184.83733 * 7 5 4 9 9 C 1.38593 * 119.57771 * 175.08116 * 8 7 5 10 10 C 1.40805 * 118.79471 * 180.29468 * 9 8 7 11 11 C 1.41548 * 120.99988 * 179.70211 * 10 9 8 12 12 H 1.08003 * 119.99869 * 23.47899 * 11 10 9 13 13 C 1.40030 * 120.00256 * 203.48510 * 11 10 9 14 14 N 1.30744 * 120.00152 * 17.08839 * 13 11 10 15 15 Si 1.86799 * 119.99920 * 197.08353 * 13 11 10 16 16 H 1.48504 * 109.47063 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46991 * 119.99802 * 15 13 11 18 18 H 1.48493 * 109.47398 * 239.99809 * 15 13 11 19 19 C 1.41180 * 118.00757 * 359.46462 * 10 9 8 20 20 C 1.37585 * 119.01118 * 0.53621 * 19 10 9 21 21 N 1.32079 * 121.11032 * 359.72474 * 20 19 10 22 22 C 1.52999 * 109.46948 * 119.99868 * 2 1 3 23 23 C 1.53002 * 117.50170 * 13.74718 * 22 2 1 24 24 C 1.52999 * 117.50311 * 305.08503 * 22 2 1 25 25 H 1.08999 * 109.47616 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47041 * 300.00226 * 1 2 3 27 27 H 1.08997 * 109.47370 * 59.99935 * 1 2 3 28 28 H 0.96702 * 113.99965 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46941 * 299.99565 * 4 2 1 30 30 H 1.08999 * 109.46996 * 180.02562 * 4 2 1 31 31 H 0.96999 * 119.99953 * 4.82960 * 7 5 4 32 32 H 1.07999 * 120.60443 * 0.02562 * 9 8 7 33 33 H 0.96994 * 119.99907 * 180.02562 * 14 13 11 34 34 H 1.07995 * 120.49239 * 180.27760 * 19 10 9 35 35 H 1.07998 * 119.44499 * 179.74121 * 20 19 10 36 36 H 1.09002 * 115.55095 * 159.42029 * 22 2 1 37 37 H 1.08997 * 117.49535 * 0.02562 * 23 22 2 38 38 H 1.08997 * 117.50007 * 145.01757 * 23 22 2 39 39 H 1.08993 * 117.50321 * 214.97874 * 24 22 2 40 40 H 1.09001 * 117.49587 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8401 0.9749 -2.3684 7 7 1.8628 -0.4716 -3.7038 8 6 1.4834 0.2415 -4.8408 9 6 1.9091 -0.1843 -6.0891 10 6 1.5215 0.5515 -7.2253 11 6 1.9348 0.1622 -8.5219 12 1 2.2140 -0.8632 -8.7145 13 6 1.9820 1.1065 -9.5548 14 7 1.9753 2.3834 -9.2740 15 14 2.0545 0.5418 -11.3339 16 1 2.0500 -0.9424 -11.3827 17 1 0.8737 1.0643 -12.0675 18 1 3.2965 1.0547 -11.9658 19 6 0.7040 1.6864 -7.0330 20 6 0.3313 2.0314 -5.7543 21 7 0.7210 1.3173 -4.7138 22 6 2.0399 -0.7212 1.2493 23 6 1.0326 -1.5533 2.0454 24 6 1.5400 -0.2225 2.6066 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.9703 1.4237 0.0004 29 1 1.6767 -1.7489 -1.2491 30 1 3.1300 -0.7216 -1.2490 31 1 2.3608 -1.2991 -3.7940 32 1 2.5305 -1.0620 -6.1882 33 1 2.0076 3.0375 -9.9895 34 1 0.3794 2.2772 -7.8767 35 1 -0.2905 2.9006 -5.5988 36 1 3.0647 -1.0888 1.1946 37 1 0.0066 -1.5871 1.6789 38 1 1.3946 -2.4680 2.5147 39 1 2.2355 -0.2624 3.4448 40 1 0.8474 0.6191 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533706049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:18 Heat of formation + Delta-G solvation = -21.207661 kcal Electronic energy + Delta-G solvation = -22665.002477 eV Core-core repulsion = 19252.812451 eV Total energy + Delta-G solvation = -3412.190026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.11903 -38.85072 -37.52639 -35.43954 -34.41009 -33.52070 -31.60087 -30.66375 -28.96286 -27.39993 -25.97494 -24.18619 -22.56331 -21.85497 -21.59001 -19.69782 -19.50319 -17.89494 -17.19066 -16.18212 -16.10420 -15.59712 -15.39134 -15.03720 -14.45707 -14.20382 -13.98866 -13.73277 -13.39177 -13.05264 -12.85237 -12.56073 -12.41482 -12.34028 -11.70878 -11.60558 -11.42545 -11.23995 -11.21853 -10.96269 -10.88454 -10.64291 -10.37255 -10.31208 -10.01222 -9.90134 -9.62817 -9.35539 -9.11172 -8.03412 -7.66467 -7.00338 -6.81249 -4.60892 2.61677 2.74911 3.01795 3.06901 3.19045 3.44815 3.53068 3.64732 3.85058 4.41964 4.44219 4.63518 4.67378 4.81488 4.85908 5.00009 5.18810 5.30221 5.42870 5.51455 5.65182 5.70663 5.75684 5.84941 5.92895 6.00827 6.04055 6.14830 6.54905 6.62094 6.68698 6.80248 6.92062 7.13741 7.42101 7.53316 7.81274 7.84355 7.89873 8.21493 8.47898 8.71691 8.74725 8.93597 9.73325 10.06498 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.048616 B = 0.002981 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.805181 B = 9389.427875 C = 9650.005283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.182 3.818 3 O -0.535 6.535 4 C -0.167 4.167 5 C 0.495 3.505 6 O -0.454 6.454 7 N -0.666 5.666 8 C 0.351 3.649 9 C -0.307 4.307 10 C 0.146 3.854 11 C -0.456 4.456 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.783 5.783 15 Si 0.911 3.089 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.227 4.227 20 C 0.104 3.896 21 N -0.553 5.553 22 C -0.188 4.188 23 C -0.179 4.179 24 C -0.166 4.166 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.367 0.633 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.403 0.597 32 H 0.100 0.900 33 H 0.283 0.717 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -7.589 14.405 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.141 3.859 3 O -0.339 6.339 4 C -0.208 4.208 5 C 0.279 3.721 6 O -0.322 6.322 7 N -0.312 5.312 8 C 0.123 3.877 9 C -0.334 4.334 10 C 0.138 3.862 11 C -0.487 4.487 12 H 0.099 0.901 13 C -0.142 4.142 14 N -0.408 5.408 15 Si 0.735 3.265 16 H -0.183 1.183 17 H -0.195 1.195 18 H -0.199 1.199 19 C -0.250 4.250 20 C -0.047 4.047 21 N -0.272 5.272 22 C -0.206 4.206 23 C -0.216 4.216 24 C -0.203 4.203 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.213 0.787 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.238 0.762 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.403 -6.208 15.307 16.523 hybrid contribution 1.498 -1.158 -1.779 2.598 sum 1.901 -7.366 13.529 15.521 Atomic orbital electron populations 1.22114 0.92430 1.01777 1.04935 1.20247 0.95131 0.81629 0.88890 1.86740 1.25597 1.24893 1.96699 1.22439 1.02493 1.01465 0.94391 1.20428 0.82000 0.85835 0.83858 1.90766 1.32746 1.23608 1.85091 1.43543 1.56742 1.26094 1.04842 1.18030 0.94192 0.91257 0.84229 1.21175 1.13382 1.07555 0.91240 1.17576 0.87036 0.89638 0.91996 1.19585 1.39636 0.96679 0.92838 0.90079 1.25973 0.91990 0.94336 1.01884 1.69796 1.33894 1.01804 1.35347 0.86213 0.78666 0.80379 0.81204 1.18302 1.19546 1.19873 1.22196 1.03612 1.02160 0.97051 1.21896 0.97389 0.96905 0.88497 1.67241 1.17949 1.08100 1.33922 1.23074 0.99328 1.04683 0.93554 1.23131 0.99750 0.94979 1.03702 1.22872 1.03744 0.97977 0.95673 0.91877 0.92428 0.88470 0.78693 0.88515 0.89144 0.76234 0.88205 0.90623 0.85639 0.85971 0.87856 0.87870 0.88989 0.89044 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 7.18 37.16 0.27 -1.82 16 2 C 0.18 2.22 0.80 -90.62 -0.07 2.15 16 3 O -0.54 -7.68 11.85 -53.49 -0.63 -8.32 16 4 C -0.17 -1.98 4.95 -27.88 -0.14 -2.11 16 5 C 0.49 8.73 7.35 -10.99 -0.08 8.65 16 6 O -0.45 -10.02 11.21 -12.69 -0.14 -10.17 16 7 N -0.67 -12.16 5.39 -11.49 -0.06 -12.22 16 8 C 0.35 8.27 7.42 -154.71 -1.15 7.12 16 9 C -0.31 -7.43 9.73 -38.48 -0.37 -7.81 16 10 C 0.15 3.86 5.60 -106.55 -0.60 3.26 16 11 C -0.46 -11.77 9.12 -37.65 -0.34 -12.11 16 12 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 13 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 14 N -0.78 -19.78 10.93 55.55 0.61 -19.17 16 15 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 16 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 C -0.23 -5.96 8.79 -38.70 -0.34 -6.30 16 20 C 0.10 2.64 11.15 -17.68 -0.20 2.44 16 21 N -0.55 -14.24 7.85 -12.53 -0.10 -14.34 16 22 C -0.19 -1.75 5.32 -90.62 -0.48 -2.23 16 23 C -0.18 -1.50 9.66 -26.69 -0.26 -1.75 16 24 C -0.17 -1.49 9.86 -26.69 -0.26 -1.75 16 25 H 0.06 0.71 6.73 -51.93 -0.35 0.36 16 26 H 0.06 0.73 6.96 -51.92 -0.36 0.37 16 27 H 0.10 1.69 5.51 -51.93 -0.29 1.40 16 28 H 0.37 3.94 9.05 45.56 0.41 4.35 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.40 5.68 8.70 -40.82 -0.35 5.33 16 32 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 34 H 0.13 3.33 6.20 -52.49 -0.33 3.01 16 35 H 0.12 2.80 8.06 -52.49 -0.42 2.38 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.88 5.89 -51.93 -0.31 0.58 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.99 7.28 -51.93 -0.38 0.62 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -32.55 329.60 -8.97 -41.52 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -4.46 Total: 15.22 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -4.12 Total: -10.46 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.45 Total: -45.74 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.78 Total: -18.48 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.55 -8.97 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533706049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.309 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds