Wall clock time and date at job start Tue Mar 31 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47008 * 2 1 4 4 C 1.52999 * 109.47074 * 239.99950 * 2 1 3 5 5 C 1.50702 * 109.47068 * 60.00179 * 4 2 1 6 6 O 1.21273 * 119.99676 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99888 * 180.02562 * 5 4 2 8 8 C 1.39471 * 119.99825 * 184.83733 * 7 5 4 9 9 C 1.38593 * 119.57771 * 175.08116 * 8 7 5 10 10 C 1.40805 * 118.79471 * 180.29468 * 9 8 7 11 11 C 1.41548 * 120.99988 * 179.70211 * 10 9 8 12 12 H 1.08003 * 119.99869 * 23.47899 * 11 10 9 13 13 C 1.40030 * 120.00256 * 203.48510 * 11 10 9 14 14 N 1.30744 * 120.00152 * 17.08839 * 13 11 10 15 15 Si 1.86799 * 119.99920 * 197.08353 * 13 11 10 16 16 H 1.48504 * 109.47063 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46991 * 119.99802 * 15 13 11 18 18 H 1.48493 * 109.47398 * 239.99809 * 15 13 11 19 19 C 1.41180 * 118.00757 * 359.46462 * 10 9 8 20 20 C 1.37585 * 119.01118 * 0.53621 * 19 10 9 21 21 N 1.32079 * 121.11032 * 359.72474 * 20 19 10 22 22 C 1.52999 * 109.46948 * 119.99868 * 2 1 3 23 23 C 1.53002 * 117.50170 * 13.74718 * 22 2 1 24 24 C 1.52999 * 117.50311 * 305.08503 * 22 2 1 25 25 H 1.08999 * 109.47616 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47041 * 300.00226 * 1 2 3 27 27 H 1.08997 * 109.47370 * 59.99935 * 1 2 3 28 28 H 0.96702 * 113.99965 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46941 * 299.99565 * 4 2 1 30 30 H 1.08999 * 109.46996 * 180.02562 * 4 2 1 31 31 H 0.96999 * 119.99953 * 4.82960 * 7 5 4 32 32 H 1.07999 * 120.60443 * 0.02562 * 9 8 7 33 33 H 0.96994 * 119.99907 * 180.02562 * 14 13 11 34 34 H 1.07995 * 120.49239 * 180.27760 * 19 10 9 35 35 H 1.07998 * 119.44499 * 179.74121 * 20 19 10 36 36 H 1.09002 * 115.55095 * 159.42029 * 22 2 1 37 37 H 1.08997 * 117.49535 * 0.02562 * 23 22 2 38 38 H 1.08997 * 117.50007 * 145.01757 * 23 22 2 39 39 H 1.08993 * 117.50321 * 214.97874 * 24 22 2 40 40 H 1.09001 * 117.49587 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8401 0.9749 -2.3684 7 7 1.8628 -0.4716 -3.7038 8 6 1.4834 0.2415 -4.8408 9 6 1.9091 -0.1843 -6.0891 10 6 1.5215 0.5515 -7.2253 11 6 1.9348 0.1622 -8.5219 12 1 2.2140 -0.8632 -8.7145 13 6 1.9820 1.1065 -9.5548 14 7 1.9753 2.3834 -9.2740 15 14 2.0545 0.5418 -11.3339 16 1 2.0500 -0.9424 -11.3827 17 1 0.8737 1.0643 -12.0675 18 1 3.2965 1.0547 -11.9658 19 6 0.7040 1.6864 -7.0330 20 6 0.3313 2.0314 -5.7543 21 7 0.7210 1.3173 -4.7138 22 6 2.0399 -0.7212 1.2493 23 6 1.0326 -1.5533 2.0454 24 6 1.5400 -0.2225 2.6066 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.9703 1.4237 0.0004 29 1 1.6767 -1.7489 -1.2491 30 1 3.1300 -0.7216 -1.2490 31 1 2.3608 -1.2991 -3.7940 32 1 2.5305 -1.0620 -6.1882 33 1 2.0076 3.0375 -9.9895 34 1 0.3794 2.2772 -7.8767 35 1 -0.2905 2.9006 -5.5988 36 1 3.0647 -1.0888 1.1946 37 1 0.0066 -1.5871 1.6789 38 1 1.3946 -2.4680 2.5147 39 1 2.2355 -0.2624 3.4448 40 1 0.8474 0.6191 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533706049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:18 Heat of formation + Delta-G solvation = -42.495216 kcal Electronic energy + Delta-G solvation = -22665.925575 eV Core-core repulsion = 19252.812451 eV Total energy + Delta-G solvation = -3413.113124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43695 -40.23546 -39.00165 -36.43055 -36.10309 -35.24085 -32.71045 -32.55727 -30.56757 -28.67079 -27.89268 -25.19764 -23.68173 -23.35380 -23.13167 -21.12225 -20.53801 -19.65819 -18.34441 -17.72510 -17.31476 -17.00859 -16.55538 -16.45620 -16.04637 -15.80823 -15.46494 -15.00849 -14.88901 -14.35291 -14.27565 -14.12374 -13.89287 -13.32261 -13.19845 -12.93997 -12.82681 -12.73126 -12.61563 -12.06333 -12.04257 -11.86653 -11.76552 -11.38867 -11.33174 -11.14428 -11.05097 -10.88745 -10.56408 -9.99356 -9.52135 -8.83791 -8.65536 -6.57491 0.78814 0.97324 1.40287 1.54223 1.56612 2.00740 2.15474 2.22301 2.80434 2.84123 3.49823 3.61718 3.67228 3.75527 3.99698 4.02367 4.17285 4.21584 4.38206 4.42141 4.61769 4.75644 4.79503 4.85867 4.87261 4.94478 4.96610 5.03680 5.05348 5.06880 5.23546 5.30455 5.32634 5.47983 5.48802 5.69355 5.94386 6.16556 6.47195 6.68418 6.80091 6.82270 6.98121 7.45852 7.89230 8.24934 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.048616 B = 0.002981 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.805181 B = 9389.427875 C = 9650.005283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.179 3.821 3 O -0.566 6.566 4 C -0.152 4.152 5 C 0.488 3.512 6 O -0.502 6.502 7 N -0.656 5.656 8 C 0.350 3.650 9 C -0.318 4.318 10 C 0.118 3.882 11 C -0.483 4.483 12 H 0.088 0.912 13 C 0.036 3.964 14 N -0.814 5.814 15 Si 0.990 3.010 16 H -0.253 1.253 17 H -0.265 1.265 18 H -0.264 1.264 19 C -0.248 4.248 20 C 0.097 3.903 21 N -0.577 5.577 22 C -0.184 4.184 23 C -0.170 4.170 24 C -0.173 4.173 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.380 0.620 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.424 0.576 32 H 0.122 0.878 33 H 0.292 0.708 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -9.973 14.956 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.138 3.862 3 O -0.372 6.372 4 C -0.192 4.192 5 C 0.275 3.725 6 O -0.373 6.373 7 N -0.305 5.305 8 C 0.121 3.879 9 C -0.344 4.344 10 C 0.109 3.891 11 C -0.513 4.513 12 H 0.106 0.894 13 C -0.181 4.181 14 N -0.439 5.439 15 Si 0.810 3.190 16 H -0.177 1.177 17 H -0.190 1.190 18 H -0.189 1.189 19 C -0.272 4.272 20 C -0.054 4.054 21 N -0.298 5.298 22 C -0.202 4.202 23 C -0.207 4.207 24 C -0.210 4.210 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.228 0.772 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.262 0.738 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.929 -8.631 15.898 18.192 hybrid contribution 1.014 -0.375 -1.867 2.158 sum 2.943 -9.006 14.031 16.930 Atomic orbital electron populations 1.22079 0.94065 1.02423 1.02593 1.20332 0.94075 0.81256 0.90570 1.86712 1.27004 1.26624 1.96898 1.22461 1.04353 1.01929 0.90476 1.21546 0.80749 0.85377 0.84824 1.90770 1.34770 1.25983 1.85776 1.43592 1.56584 1.26466 1.03830 1.18358 0.92905 0.90689 0.85981 1.21384 1.13813 1.08188 0.90993 1.17995 0.87495 0.90203 0.93374 1.19905 1.40537 0.97406 0.93440 0.89418 1.26923 0.90826 0.94066 1.06288 1.69847 1.33702 1.03093 1.37293 0.85040 0.78955 0.80039 0.74974 1.17656 1.18974 1.18917 1.22142 1.05040 1.02984 0.96986 1.22142 0.97465 0.97401 0.88437 1.67359 1.19173 1.09294 1.33935 1.22948 1.00567 1.04771 0.91895 1.23212 0.99324 0.95345 1.02836 1.22900 1.03963 0.97956 0.96188 0.89755 0.92647 0.92805 0.77188 0.85332 0.85777 0.73774 0.85970 0.89683 0.86782 0.84742 0.85507 0.88388 0.86931 0.87492 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 7.18 71.98 0.52 -3.58 16 2 C 0.18 4.01 0.80 -10.79 -0.01 4.00 16 3 O -0.57 -15.91 11.85 -131.53 -1.56 -17.47 16 4 C -0.15 -3.12 4.95 29.85 0.15 -2.97 16 5 C 0.49 16.73 7.35 87.66 0.64 17.37 16 6 O -0.50 -22.59 11.21 14.45 0.16 -22.42 16 7 N -0.66 -23.17 5.39 -308.67 -1.66 -24.83 16 8 C 0.35 16.56 7.42 132.75 0.98 17.55 16 9 C -0.32 -15.44 9.73 22.98 0.22 -15.22 16 10 C 0.12 6.36 5.60 -21.11 -0.12 6.24 16 11 C -0.48 -25.08 9.12 23.52 0.21 -24.87 16 12 H 0.09 4.29 7.90 -2.91 -0.02 4.26 16 13 C 0.04 1.76 5.20 85.29 0.44 2.21 16 14 N -0.81 -41.67 10.93 21.84 0.24 -41.43 16 15 Si 0.99 36.34 29.59 68.60 2.03 38.37 16 16 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 17 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 18 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 19 C -0.25 -13.54 8.79 22.84 0.20 -13.34 16 20 C 0.10 5.09 11.15 84.50 0.94 6.03 16 21 N -0.58 -30.54 7.85 -193.55 -1.52 -32.06 16 22 C -0.18 -2.81 5.32 -10.79 -0.06 -2.86 16 23 C -0.17 -2.30 9.66 30.62 0.30 -2.00 16 24 C -0.17 -2.72 9.86 30.62 0.30 -2.41 16 25 H 0.08 1.78 6.73 -2.39 -0.02 1.77 16 26 H 0.05 1.43 6.96 -2.38 -0.02 1.41 16 27 H 0.05 1.93 5.51 -2.39 -0.01 1.92 16 28 H 0.38 7.70 9.05 -74.06 -0.67 7.03 16 29 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.42 10.91 8.70 -92.71 -0.81 10.10 16 32 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 33 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 34 H 0.11 6.35 6.20 -2.91 -0.02 6.33 16 35 H 0.14 6.47 8.06 -2.91 -0.02 6.44 16 36 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.43 5.89 -2.39 -0.01 1.41 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.56 7.28 -2.39 -0.02 1.54 16 Total: -1.00 -73.87 329.60 2.03 -71.83 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.39 Total: 41.86 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.73 Total: -13.85 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -2.94 Total: -98.32 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.40 Total: -39.89 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -73.87 2.03 -71.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533706049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds