Wall clock time and date at job start Tue Mar 31 2020 06:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47349 * 2 1 4 4 C 1.50700 * 109.47057 * 180.02562 * 3 2 1 5 5 O 1.21285 * 120.00207 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99905 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00286 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47424 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99954 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99901 * 179.97438 * 8 7 6 11 11 C 1.39131 * 119.99596 * 185.72517 * 10 8 7 12 12 C 1.38643 * 120.29102 * 19.23887 * 11 10 8 13 13 C 1.38218 * 120.03790 * 180.25521 * 12 11 10 14 14 C 1.38869 * 120.61130 * 359.74772 * 13 12 11 15 15 C 1.36452 * 120.58138 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.94318 * 0.02562 * 15 14 13 17 17 C 1.41075 * 120.30396 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00290 * 206.47144 * 17 16 15 19 19 C 1.39960 * 119.99628 * 26.47377 * 17 16 15 20 20 N 1.30856 * 120.00076 * 201.35880 * 19 17 16 21 21 Si 1.86801 * 120.00227 * 21.35675 * 19 17 16 22 22 H 1.48501 * 109.47328 * 270.00467 * 21 19 17 23 23 H 1.48502 * 109.46755 * 29.99960 * 21 19 17 24 24 H 1.48496 * 109.47355 * 149.99993 * 21 19 17 25 25 H 1.09003 * 109.47536 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47301 * 300.00097 * 1 2 3 27 27 H 1.09004 * 109.47301 * 59.99698 * 1 2 3 28 28 H 1.09008 * 109.47301 * 239.99903 * 2 1 3 29 29 H 1.09004 * 109.47301 * 120.00302 * 2 1 3 30 30 H 1.08996 * 109.47338 * 59.99960 * 3 2 1 31 31 H 1.08997 * 109.46776 * 299.99845 * 3 2 1 32 32 H 0.97005 * 120.00034 * 359.97438 * 6 4 3 33 33 H 1.09000 * 109.47612 * 59.99410 * 7 6 4 34 34 H 1.09004 * 109.46991 * 300.00207 * 7 6 4 35 35 H 0.96996 * 120.00122 * 5.72752 * 10 8 7 36 36 H 1.08002 * 119.97637 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.69243 * 179.76358 * 13 12 11 38 38 H 1.08004 * 119.70407 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.02954 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99239 * 354.93959 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0015 6 7 4.2209 2.6096 -0.0013 7 6 5.6859 2.6096 -0.0025 8 6 6.1882 4.0303 -0.0023 9 8 5.4001 4.9522 -0.0018 10 7 7.5134 4.2765 -0.0028 11 6 7.9782 5.5824 0.1175 12 6 7.1541 6.5739 0.6274 13 6 7.6196 7.8705 0.7397 14 6 8.9129 8.1937 0.3505 15 6 9.7471 7.2366 -0.1493 16 6 9.2979 5.9087 -0.2741 17 6 10.1539 4.9132 -0.7903 18 1 9.7386 4.0448 -1.2801 19 6 11.5413 5.0509 -0.6678 20 7 12.3376 4.3936 -1.4716 21 14 12.2563 6.1732 0.6433 22 1 12.4191 7.5412 0.0889 23 1 11.3391 6.2180 1.8103 24 1 13.5790 5.6525 1.0729 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.7359 3.4497 -0.0017 33 1 6.0486 2.0956 -0.8926 34 1 6.0499 2.0958 0.8873 35 1 8.1428 3.5434 -0.0870 36 1 6.1464 6.3338 0.9327 37 1 6.9716 8.6392 1.1340 38 1 9.2616 9.2115 0.4450 39 1 10.7514 7.4978 -0.4489 40 1 11.9702 3.7556 -2.1032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573019028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:28 Heat of formation + Delta-G solvation = -67.247210 kcal Electronic energy + Delta-G solvation = -22160.447377 eV Core-core repulsion = 18746.260926 eV Total energy + Delta-G solvation = -3414.186451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30300 -39.44040 -37.56061 -34.78747 -34.40831 -34.08349 -33.80895 -30.32831 -29.84124 -28.48891 -26.62709 -24.76368 -22.51502 -21.90996 -20.67275 -20.44010 -19.73774 -18.32347 -17.71349 -16.90611 -16.24456 -16.04519 -15.79972 -15.38362 -14.88391 -14.41054 -14.22652 -14.07642 -13.60926 -13.39246 -13.15458 -12.85812 -12.70291 -12.63705 -12.19881 -12.12826 -12.00045 -11.66588 -11.43294 -11.03491 -10.98670 -10.89093 -10.57492 -10.00766 -9.94925 -9.85194 -9.55896 -9.23851 -9.21536 -8.93860 -7.83164 -7.45672 -7.11660 -4.63159 2.25325 2.53280 2.63613 2.90196 3.08469 3.14317 3.31096 3.48399 3.73311 3.92703 4.45957 4.56204 4.65696 4.75437 4.95141 5.18068 5.22191 5.28737 5.35557 5.37150 5.38231 5.50237 5.77516 5.90092 6.04841 6.05846 6.12296 6.22281 6.31634 6.54766 6.72927 6.92155 7.23542 7.27329 7.40025 7.43299 7.56365 7.75831 7.83395 8.05169 8.13663 8.25596 8.37338 8.57242 8.68095 9.87450 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.003242 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.150449 B = 8634.424348 C = 9519.137867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.512 3.488 5 O -0.545 6.545 6 N -0.717 5.717 7 C 0.101 3.899 8 C 0.490 3.510 9 O -0.539 6.539 10 N -0.626 5.626 11 C 0.017 3.983 12 C -0.089 4.089 13 C -0.232 4.232 14 C -0.085 4.085 15 C -0.234 4.234 16 C 0.088 3.912 17 C -0.523 4.523 18 H 0.075 0.925 19 C 0.046 3.954 20 N -0.809 5.809 21 Si 1.075 2.925 22 H -0.275 1.275 23 H -0.263 1.263 24 H -0.290 1.290 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.409 0.591 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.493 -4.515 3.327 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.179 4.179 4 C 0.299 3.701 5 O -0.423 6.423 6 N -0.372 5.372 7 C -0.027 4.027 8 C 0.277 3.723 9 O -0.418 6.418 10 N -0.267 5.267 11 C -0.077 4.077 12 C -0.109 4.109 13 C -0.252 4.252 14 C -0.104 4.104 15 C -0.254 4.254 16 C 0.084 3.916 17 C -0.551 4.551 18 H 0.093 0.907 19 C -0.175 4.175 20 N -0.430 5.430 21 Si 0.901 3.099 22 H -0.202 1.202 23 H -0.187 1.187 24 H -0.217 1.217 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.250 0.750 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.246 0.754 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.143 -4.150 3.836 14.306 hybrid contribution -1.182 -0.571 -0.940 1.615 sum -14.325 -4.721 2.896 15.359 Atomic orbital electron populations 1.21798 0.95492 1.01925 1.01831 1.21283 0.95223 0.94639 1.03602 1.21705 0.91319 1.00249 1.04662 1.20782 0.90479 0.83172 0.75664 1.90708 1.70558 1.31332 1.49672 1.45769 1.06136 1.09875 1.75407 1.21032 0.82070 0.94878 1.04716 1.20389 0.83070 0.90657 0.78167 1.90561 1.55434 1.45104 1.50715 1.42844 1.06158 1.09122 1.68618 1.17711 0.96409 0.83215 1.10351 1.21138 0.99544 0.92381 0.97831 1.20346 0.96553 0.95922 1.12397 1.20409 0.94133 0.97585 0.98233 1.20716 1.00452 0.92889 1.11323 1.17480 0.90878 0.92844 0.90425 1.20391 0.93039 1.06958 1.34754 0.90653 1.27284 0.93843 0.98499 0.97846 1.70569 1.40451 1.18542 1.13487 0.83568 0.75595 0.74900 0.75849 1.20200 1.18746 1.21727 0.92427 0.92658 0.92651 0.91215 0.91215 0.88736 0.88746 0.74996 0.88582 0.88445 0.75444 0.85205 0.88592 0.88718 0.87315 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.15 0.37 -0.63 16 2 C -0.11 -0.95 5.22 -26.73 -0.14 -1.09 16 3 C -0.14 -1.19 5.70 -27.88 -0.16 -1.34 16 4 C 0.51 6.34 7.83 -10.99 -0.09 6.25 16 5 O -0.55 -8.65 15.98 5.55 0.09 -8.56 16 6 N -0.72 -8.91 5.53 -61.47 -0.34 -9.25 16 7 C 0.10 1.37 6.16 -5.20 -0.03 1.34 16 8 C 0.49 8.38 7.74 -10.99 -0.09 8.30 16 9 O -0.54 -10.35 12.55 5.55 0.07 -10.28 16 10 N -0.63 -11.93 5.18 -9.47 -0.05 -11.98 16 11 C 0.02 0.39 6.54 -83.17 -0.54 -0.16 16 12 C -0.09 -1.97 8.78 -39.44 -0.35 -2.32 16 13 C -0.23 -4.95 10.04 -39.36 -0.39 -5.35 16 14 C -0.08 -1.83 9.96 -39.99 -0.40 -2.23 16 15 C -0.23 -5.50 7.33 -39.28 -0.29 -5.79 16 16 C 0.09 2.14 5.18 -106.65 -0.55 1.59 16 17 C -0.52 -12.96 8.75 -37.86 -0.33 -13.29 16 18 H 0.08 1.86 7.20 -52.49 -0.38 1.48 16 19 C 0.05 1.14 5.38 -17.32 -0.09 1.04 16 20 N -0.81 -20.61 13.66 55.55 0.76 -19.85 16 21 Si 1.07 23.27 25.01 -169.99 -4.25 19.02 16 22 H -0.28 -5.71 6.37 56.52 0.36 -5.35 16 23 H -0.26 -5.67 7.10 56.52 0.40 -5.27 16 24 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.41 4.82 7.44 -40.82 -0.30 4.52 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.41 7.18 7.33 -40.82 -0.30 6.88 16 36 H 0.13 2.81 5.39 -52.49 -0.28 2.53 16 37 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 39 H 0.11 2.52 4.35 -52.49 -0.23 2.29 16 40 H 0.29 7.09 8.73 -40.82 -0.36 6.73 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -29.27 332.76 -7.12 -36.39 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.33 Total: 13.17 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.08 Total: -13.67 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.37 Total: -41.08 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.16 Total: -18.84 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.25 Total: 19.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.27 -7.12 -36.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573019028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.859 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds