Wall clock time and date at job start Tue Mar 31 2020 06:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47349 * 2 1 4 4 C 1.50700 * 109.47057 * 180.02562 * 3 2 1 5 5 O 1.21285 * 120.00207 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99905 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00286 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47424 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99954 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99901 * 179.97438 * 8 7 6 11 11 C 1.39131 * 119.99596 * 185.72517 * 10 8 7 12 12 C 1.38643 * 120.29102 * 19.23887 * 11 10 8 13 13 C 1.38218 * 120.03790 * 180.25521 * 12 11 10 14 14 C 1.38869 * 120.61130 * 359.74772 * 13 12 11 15 15 C 1.36452 * 120.58138 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.94318 * 0.02562 * 15 14 13 17 17 C 1.41075 * 120.30396 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00290 * 206.47144 * 17 16 15 19 19 C 1.39960 * 119.99628 * 26.47377 * 17 16 15 20 20 N 1.30856 * 120.00076 * 201.35880 * 19 17 16 21 21 Si 1.86801 * 120.00227 * 21.35675 * 19 17 16 22 22 H 1.48501 * 109.47328 * 270.00467 * 21 19 17 23 23 H 1.48502 * 109.46755 * 29.99960 * 21 19 17 24 24 H 1.48496 * 109.47355 * 149.99993 * 21 19 17 25 25 H 1.09003 * 109.47536 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47301 * 300.00097 * 1 2 3 27 27 H 1.09004 * 109.47301 * 59.99698 * 1 2 3 28 28 H 1.09008 * 109.47301 * 239.99903 * 2 1 3 29 29 H 1.09004 * 109.47301 * 120.00302 * 2 1 3 30 30 H 1.08996 * 109.47338 * 59.99960 * 3 2 1 31 31 H 1.08997 * 109.46776 * 299.99845 * 3 2 1 32 32 H 0.97005 * 120.00034 * 359.97438 * 6 4 3 33 33 H 1.09000 * 109.47612 * 59.99410 * 7 6 4 34 34 H 1.09004 * 109.46991 * 300.00207 * 7 6 4 35 35 H 0.96996 * 120.00122 * 5.72752 * 10 8 7 36 36 H 1.08002 * 119.97637 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.69243 * 179.76358 * 13 12 11 38 38 H 1.08004 * 119.70407 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.02954 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99239 * 354.93959 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0015 6 7 4.2209 2.6096 -0.0013 7 6 5.6859 2.6096 -0.0025 8 6 6.1882 4.0303 -0.0023 9 8 5.4001 4.9522 -0.0018 10 7 7.5134 4.2765 -0.0028 11 6 7.9782 5.5824 0.1175 12 6 7.1541 6.5739 0.6274 13 6 7.6196 7.8705 0.7397 14 6 8.9129 8.1937 0.3505 15 6 9.7471 7.2366 -0.1493 16 6 9.2979 5.9087 -0.2741 17 6 10.1539 4.9132 -0.7903 18 1 9.7386 4.0448 -1.2801 19 6 11.5413 5.0509 -0.6678 20 7 12.3376 4.3936 -1.4716 21 14 12.2563 6.1732 0.6433 22 1 12.4191 7.5412 0.0889 23 1 11.3391 6.2180 1.8103 24 1 13.5790 5.6525 1.0729 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.7359 3.4497 -0.0017 33 1 6.0486 2.0956 -0.8926 34 1 6.0499 2.0958 0.8873 35 1 8.1428 3.5434 -0.0870 36 1 6.1464 6.3338 0.9327 37 1 6.9716 8.6392 1.1340 38 1 9.2616 9.2115 0.4450 39 1 10.7514 7.4978 -0.4489 40 1 11.9702 3.7556 -2.1032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573019028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:28 Heat of formation + Delta-G solvation = -86.463019 kcal Electronic energy + Delta-G solvation = -22161.280637 eV Core-core repulsion = 18746.260926 eV Total energy + Delta-G solvation = -3415.019711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67275 -40.64338 -39.19268 -35.85679 -35.71973 -35.49830 -35.23927 -32.11822 -31.19088 -29.64050 -27.70721 -26.50470 -24.01172 -22.89802 -22.23365 -21.50300 -21.15813 -20.13402 -18.96612 -18.34928 -17.39926 -17.21781 -17.03610 -16.54580 -16.43442 -16.01518 -15.44148 -15.32774 -15.04957 -14.65790 -14.40227 -14.30883 -14.01005 -13.94741 -13.85127 -13.35952 -12.85423 -12.71423 -12.66962 -12.60501 -12.26973 -12.03083 -11.69538 -11.62527 -11.51527 -11.25480 -11.03864 -10.96006 -10.56923 -10.29465 -9.65246 -9.30266 -8.83660 -6.50498 0.61525 0.84580 1.40232 1.49871 1.56531 1.64734 1.76665 1.80458 2.18427 2.46934 2.64389 3.50330 3.51720 3.77566 4.01647 4.11110 4.21711 4.25702 4.35774 4.46247 4.58203 4.67168 4.70435 4.76024 4.86125 4.92232 4.98613 5.14313 5.21745 5.26325 5.28155 5.43133 5.47161 5.55175 5.63082 5.87361 6.01312 6.03707 6.36485 6.43037 6.54351 6.62683 6.83275 7.10010 7.14181 7.99273 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.003242 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.150449 B = 8634.424348 C = 9519.137867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.510 3.490 5 O -0.584 6.584 6 N -0.714 5.714 7 C 0.110 3.890 8 C 0.498 3.502 9 O -0.555 6.555 10 N -0.633 5.633 11 C 0.016 3.984 12 C -0.106 4.106 13 C -0.221 4.221 14 C -0.092 4.092 15 C -0.247 4.247 16 C 0.062 3.938 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.017 3.983 20 N -0.837 5.837 21 Si 1.102 2.898 22 H -0.260 1.260 23 H -0.264 1.264 24 H -0.284 1.284 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.418 0.582 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.414 0.586 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 -3.211 4.282 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.172 4.172 4 C 0.299 3.701 5 O -0.464 6.464 6 N -0.369 5.369 7 C -0.018 4.018 8 C 0.286 3.714 9 O -0.435 6.435 10 N -0.275 5.275 11 C -0.079 4.079 12 C -0.126 4.126 13 C -0.240 4.240 14 C -0.110 4.110 15 C -0.267 4.267 16 C 0.058 3.942 17 C -0.571 4.571 18 H 0.080 0.920 19 C -0.198 4.198 20 N -0.460 5.460 21 Si 0.924 3.076 22 H -0.186 1.186 23 H -0.188 1.188 24 H -0.211 1.211 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.257 0.743 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.251 0.749 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.126 0.874 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.163 -2.845 4.782 16.152 hybrid contribution -0.774 -0.928 -1.204 1.706 sum -15.937 -3.774 3.577 16.764 Atomic orbital electron populations 1.21762 0.93581 1.02450 1.02752 1.21271 0.96806 0.94498 1.02198 1.21779 0.88094 1.00595 1.06733 1.21502 0.91992 0.82259 0.74328 1.90696 1.71638 1.32610 1.51487 1.45804 1.05464 1.10359 1.75267 1.20938 0.83065 0.92221 1.05582 1.20874 0.82083 0.91858 0.76535 1.90537 1.55659 1.46199 1.51150 1.42910 1.07146 1.08210 1.69184 1.17957 0.96009 0.84799 1.09124 1.21380 0.99880 0.92930 0.98433 1.20798 0.96772 0.96229 1.10239 1.20765 0.93941 0.98841 0.97478 1.20916 1.00988 0.93073 1.11686 1.17697 0.91756 0.93314 0.91422 1.20358 0.93466 1.07225 1.36085 0.92038 1.28134 0.94240 0.99015 0.98433 1.70632 1.40588 1.20048 1.14772 0.83223 0.75314 0.74696 0.74352 1.18606 1.18805 1.21104 0.92203 0.91654 0.91752 0.92765 0.92626 0.86435 0.86622 0.74339 0.87927 0.87323 0.74888 0.84636 0.85553 0.85367 0.87384 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.11 -1.75 5.22 30.59 0.16 -1.59 16 3 C -0.13 -1.95 5.70 29.85 0.17 -1.78 16 4 C 0.51 11.91 7.83 87.66 0.69 12.60 16 5 O -0.58 -18.27 15.98 -3.05 -0.05 -18.32 16 6 N -0.71 -16.57 5.53 -466.79 -2.58 -19.15 16 7 C 0.11 2.86 6.16 85.63 0.53 3.39 16 8 C 0.50 16.52 7.74 87.66 0.68 17.20 16 9 O -0.56 -20.49 12.55 -3.04 -0.04 -20.52 16 10 N -0.63 -23.95 5.18 -302.27 -1.57 -25.52 16 11 C 0.02 0.71 6.54 38.88 0.25 0.96 16 12 C -0.11 -4.51 8.78 22.36 0.20 -4.31 16 13 C -0.22 -8.72 10.04 22.42 0.22 -8.50 16 14 C -0.09 -3.69 9.96 22.00 0.22 -3.47 16 15 C -0.25 -11.30 7.33 22.46 0.16 -11.13 16 16 C 0.06 3.02 5.18 -21.18 -0.11 2.91 16 17 C -0.54 -27.48 8.75 23.38 0.20 -27.27 16 18 H 0.06 3.17 7.20 -2.91 -0.02 3.15 16 19 C 0.02 0.86 5.38 85.26 0.46 1.32 16 20 N -0.84 -43.82 13.66 21.83 0.30 -43.52 16 21 Si 1.10 46.72 25.01 68.60 1.72 48.43 16 22 H -0.26 -10.30 6.37 99.48 0.63 -9.67 16 23 H -0.26 -11.06 7.10 99.48 0.71 -10.35 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.05 1.02 8.10 -2.38 -0.02 1.00 16 29 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.42 8.91 7.44 -92.70 -0.69 8.22 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 2.65 8.14 -2.38 -0.02 2.64 16 35 H 0.41 14.75 7.33 -92.71 -0.68 14.07 16 36 H 0.14 5.60 5.39 -2.91 -0.02 5.58 16 37 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.11 4.88 4.35 -2.91 -0.01 4.87 16 40 H 0.28 14.46 8.73 -92.71 -0.81 13.65 16 Total: -1.00 -62.68 332.76 1.93 -60.75 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.40 Total: 38.41 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.55 Total: -20.57 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -3.85 Total: -88.19 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.09 Total: -38.84 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.72 Total: 48.43 kcal Total: -62.68 1.93 -60.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573019028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.709 kcal (2) G-P(sol) polarization free energy of solvation -62.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds