Wall clock time and date at job start Tue Mar 31 2020 06:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00096 * 2 1 4 4 N 1.46497 * 109.46833 * 124.99749 * 3 2 1 5 5 C 1.46498 * 120.00213 * 269.99781 * 4 3 2 6 6 C 1.50705 * 109.46990 * 270.00632 * 5 4 3 7 7 H 1.07995 * 120.00542 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99712 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99885 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99843 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47135 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47018 * 119.99669 * 10 8 6 13 13 H 1.48498 * 109.47079 * 239.99873 * 10 8 6 14 14 C 1.34774 * 120.00075 * 90.00155 * 4 3 2 15 15 O 1.21279 * 120.00072 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99867 * 359.97438 * 14 4 3 17 17 C 1.52999 * 109.47009 * 179.97438 * 16 14 4 18 18 N 1.46507 * 109.47241 * 180.02562 * 17 16 14 19 19 C 1.35763 * 119.62574 * 90.00014 * 18 17 16 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02413 * 18 17 16 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.07999 * 119.99797 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00209 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99484 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47211 * 4.99593 * 3 2 1 29 29 H 1.08994 * 109.47092 * 244.99806 * 3 2 1 30 30 H 1.09001 * 109.46953 * 30.00031 * 5 4 3 31 31 H 1.08998 * 109.47460 * 150.00658 * 5 4 3 32 32 H 0.97004 * 119.99464 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46770 * 60.00416 * 16 14 4 34 34 H 1.08991 * 109.47572 * 300.00317 * 16 14 4 35 35 H 1.08991 * 109.47264 * 60.00383 * 17 16 14 36 36 H 1.09001 * 109.47142 * 300.00018 * 17 16 14 37 37 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 38 38 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 39 39 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 40 40 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3436 2.4803 7 1 3.3040 3.8369 1.6368 8 6 2.5184 4.0668 3.6082 9 7 1.9580 3.4661 4.6353 10 14 2.8727 5.8995 3.6773 11 1 3.5015 6.3305 2.4028 12 1 1.6024 6.6421 3.8778 13 1 3.7954 6.1831 4.8058 14 6 4.2496 0.8661 0.9825 15 8 5.0198 0.8886 1.9191 16 6 4.6969 0.3172 -0.3479 17 6 6.1534 -0.1402 -0.2471 18 7 6.5885 -0.6732 -1.5406 19 6 7.1482 0.1592 -2.4555 20 6 7.5526 -0.3089 -3.6593 21 6 7.4057 -1.6689 -3.9668 22 6 6.8428 -2.5035 -3.0465 23 6 6.4282 -1.9831 -1.8086 24 8 5.9233 -2.7189 -0.9758 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9313 30 1 1.4887 1.6966 2.5459 31 1 3.0989 1.3603 3.2260 32 1 1.7291 3.9748 5.4289 33 1 4.6121 1.0937 -1.1082 34 1 4.0678 -0.5296 -0.6216 35 1 6.2387 -0.9164 0.5132 36 1 6.7823 0.7070 0.0263 37 1 7.2674 1.2069 -2.2221 38 1 7.9920 0.3639 -4.3809 39 1 7.7308 -2.0506 -4.9234 40 1 6.7174 -3.5533 -3.2667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590038506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:39 Heat of formation + Delta-G solvation = -14.327032 kcal Electronic energy + Delta-G solvation = -22730.909077 eV Core-core repulsion = 19319.017417 eV Total energy + Delta-G solvation = -3411.891660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44109 -39.17541 -36.96879 -35.82692 -35.06535 -33.23781 -32.11288 -31.10824 -29.93267 -27.71190 -25.71938 -25.05252 -23.85070 -22.85129 -21.79852 -19.95936 -18.48275 -17.71947 -17.42211 -16.58885 -16.52729 -16.08383 -15.86413 -15.30178 -15.10613 -14.61407 -14.48467 -14.24959 -14.15380 -13.50847 -12.86729 -12.73308 -12.53044 -12.36277 -12.20304 -12.03347 -11.84542 -11.69140 -11.32670 -11.19475 -10.96888 -10.89985 -10.64364 -10.29130 -10.22263 -9.99159 -9.66233 -9.19732 -9.02597 -8.46479 -8.11562 -7.74775 -6.06984 -4.12145 0.67251 1.72980 2.43511 2.52675 3.27069 3.30035 3.35289 3.38700 3.51882 3.96266 4.40124 4.43996 4.52548 4.74414 4.88117 4.96005 5.05203 5.07229 5.15591 5.26030 5.28260 5.36382 5.45037 5.65555 5.75222 5.83408 5.84809 5.98160 5.99927 6.08253 6.17015 6.37371 6.80268 6.89599 6.98902 7.04828 7.42365 7.49595 7.88834 7.96145 8.19860 8.33352 8.84632 9.00367 9.52836 11.01190 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.003890 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.096666 B = 7196.473888 C = 7924.605955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.137 3.863 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.512 3.488 15 O -0.540 6.540 16 C -0.155 4.155 17 C 0.105 3.895 18 N -0.494 5.494 19 C 0.140 3.860 20 C -0.242 4.242 21 C -0.017 4.017 22 C -0.248 4.248 23 C 0.509 3.491 24 O -0.548 6.548 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -6.314 -19.288 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.013 3.987 4 N -0.321 5.321 5 C 0.127 3.873 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.298 3.702 15 O -0.418 6.418 16 C -0.196 4.196 17 C -0.016 4.016 18 N -0.203 5.203 19 C 0.012 3.988 20 C -0.265 4.265 21 C -0.039 4.039 22 C -0.269 4.269 23 C 0.311 3.689 24 O -0.430 6.430 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.768 -6.718 -17.980 20.353 hybrid contribution 0.043 1.070 -0.067 1.072 sum 6.811 -5.649 -18.047 20.100 Atomic orbital electron populations 1.23818 0.95809 1.01777 1.00468 1.23436 0.96473 0.99051 0.99979 1.20589 0.93124 0.95438 0.89583 1.48212 1.10326 1.59849 1.13723 1.19307 0.95509 0.93786 0.78652 1.21453 1.40598 0.93254 1.01293 0.92409 1.24947 0.95052 0.98785 0.95343 1.69951 1.41936 1.36100 1.05189 0.86442 0.77932 0.84922 0.78095 1.19835 1.20961 1.20860 1.19971 0.82657 0.78633 0.88970 1.90690 1.52612 1.56600 1.41916 1.22000 0.96855 1.02494 0.98224 1.21805 0.95262 1.01518 0.83065 1.45722 1.48867 1.09669 1.16079 1.22077 0.91189 0.96542 0.88976 1.20631 1.11410 0.96741 0.97747 1.21419 0.91056 0.93035 0.98411 1.22129 1.08451 1.01963 0.94405 1.17216 0.81448 0.80737 0.89512 1.90989 1.46324 1.56444 1.49266 0.88269 0.88733 0.87730 0.89341 0.90918 0.94890 0.93792 0.92734 0.89070 0.88681 0.87212 0.88042 0.82008 0.83889 0.85023 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.32 29.01 0.42 -2.01 16 2 C -0.17 -2.52 9.74 -36.03 -0.35 -2.87 16 3 C 0.14 2.20 5.65 -5.20 -0.03 2.17 16 4 N -0.59 -12.31 2.44 -176.44 -0.43 -12.74 16 5 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 6 C -0.53 -14.70 9.39 -34.44 -0.32 -15.03 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.51 10.32 7.67 -10.99 -0.08 10.24 16 15 O -0.54 -13.13 15.56 5.56 0.09 -13.05 16 16 C -0.15 -2.25 4.58 -27.88 -0.13 -2.38 16 17 C 0.10 1.44 4.62 -4.04 -0.02 1.42 16 18 N -0.49 -5.86 2.58 -119.77 -0.31 -6.17 16 19 C 0.14 1.16 10.28 -16.84 -0.17 0.98 16 20 C -0.24 -1.67 10.01 -39.88 -0.40 -2.07 16 21 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 22 C -0.25 -2.64 9.99 -39.38 -0.39 -3.04 16 23 C 0.51 7.16 7.41 -15.44 -0.11 7.04 16 24 O -0.55 -10.03 16.64 4.87 0.08 -9.95 16 25 H 0.10 1.29 7.84 -52.49 -0.41 0.87 16 26 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 27 H 0.10 1.54 7.83 -52.48 -0.41 1.13 16 28 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 29 H 0.07 0.96 6.44 -51.93 -0.33 0.63 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 34 H 0.09 1.39 7.77 -51.93 -0.40 0.98 16 35 H 0.11 1.81 7.35 -51.93 -0.38 1.43 16 36 H 0.10 1.27 7.97 -51.93 -0.41 0.86 16 37 H 0.16 0.88 8.04 -52.49 -0.42 0.46 16 38 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -35.49 347.94 -7.34 -42.83 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.60 Total: 1.08 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.12 Total: 1.95 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.00 Total: -44.62 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.17 Total: -22.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.49 -7.34 -42.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.502 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds