Wall clock time and date at job start Tue Mar 31 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00096 * 2 1 4 4 N 1.46497 * 109.46833 * 124.99749 * 3 2 1 5 5 C 1.46498 * 120.00213 * 269.99781 * 4 3 2 6 6 C 1.50705 * 109.46990 * 270.00632 * 5 4 3 7 7 H 1.07995 * 120.00542 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99712 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99885 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99843 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47135 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47018 * 119.99669 * 10 8 6 13 13 H 1.48498 * 109.47079 * 239.99873 * 10 8 6 14 14 C 1.34774 * 120.00075 * 90.00155 * 4 3 2 15 15 O 1.21279 * 120.00072 * 179.97438 * 14 4 3 16 16 C 1.50701 * 119.99867 * 359.97438 * 14 4 3 17 17 C 1.52999 * 109.47009 * 179.97438 * 16 14 4 18 18 N 1.46507 * 109.47241 * 180.02562 * 17 16 14 19 19 C 1.35763 * 119.62574 * 90.00014 * 18 17 16 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02413 * 18 17 16 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.07999 * 119.99797 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00209 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99484 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47211 * 4.99593 * 3 2 1 29 29 H 1.08994 * 109.47092 * 244.99806 * 3 2 1 30 30 H 1.09001 * 109.46953 * 30.00031 * 5 4 3 31 31 H 1.08998 * 109.47460 * 150.00658 * 5 4 3 32 32 H 0.97004 * 119.99464 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46770 * 60.00416 * 16 14 4 34 34 H 1.08991 * 109.47572 * 300.00317 * 16 14 4 35 35 H 1.08991 * 109.47264 * 60.00383 * 17 16 14 36 36 H 1.09001 * 109.47142 * 300.00018 * 17 16 14 37 37 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 38 38 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 39 39 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 40 40 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3436 2.4803 7 1 3.3040 3.8369 1.6368 8 6 2.5184 4.0668 3.6082 9 7 1.9580 3.4661 4.6353 10 14 2.8727 5.8995 3.6773 11 1 3.5015 6.3305 2.4028 12 1 1.6024 6.6421 3.8778 13 1 3.7954 6.1831 4.8058 14 6 4.2496 0.8661 0.9825 15 8 5.0198 0.8886 1.9191 16 6 4.6969 0.3172 -0.3479 17 6 6.1534 -0.1402 -0.2471 18 7 6.5885 -0.6732 -1.5406 19 6 7.1482 0.1592 -2.4555 20 6 7.5526 -0.3089 -3.6593 21 6 7.4057 -1.6689 -3.9668 22 6 6.8428 -2.5035 -3.0465 23 6 6.4282 -1.9831 -1.8086 24 8 5.9233 -2.7189 -0.9758 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9313 30 1 1.4887 1.6966 2.5459 31 1 3.0989 1.3603 3.2260 32 1 1.7291 3.9748 5.4289 33 1 4.6121 1.0937 -1.1082 34 1 4.0678 -0.5296 -0.6216 35 1 6.2387 -0.9164 0.5132 36 1 6.7823 0.7070 0.0263 37 1 7.2674 1.2069 -2.2221 38 1 7.9920 0.3639 -4.3809 39 1 7.7308 -2.0506 -4.9234 40 1 6.7174 -3.5533 -3.2667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590038506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:38 Heat of formation + Delta-G solvation = -37.263698 kcal Electronic energy + Delta-G solvation = -22731.903685 eV Core-core repulsion = 19319.017417 eV Total energy + Delta-G solvation = -3412.886268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.34836 -40.77663 -37.95580 -37.34716 -36.03946 -35.11821 -33.71816 -32.30837 -30.73524 -29.55658 -27.02810 -26.46581 -24.80604 -24.30935 -22.96608 -21.20829 -19.99702 -18.80139 -18.57080 -18.26769 -17.65280 -17.42381 -17.02958 -16.62440 -16.56563 -16.10014 -15.69866 -15.34548 -15.10398 -14.82925 -14.42458 -14.15636 -13.98190 -13.74831 -13.32540 -13.22142 -13.02462 -12.89978 -12.79124 -12.69443 -12.57322 -12.35188 -12.21975 -12.17693 -11.65769 -11.14241 -10.98960 -10.69186 -10.65470 -10.37224 -9.52282 -8.94209 -8.22275 -6.37519 -0.03255 0.96265 1.25982 1.38094 1.40275 1.52089 1.58006 1.73353 2.33759 2.48466 2.73807 3.07960 3.55139 3.65586 3.73725 3.89639 4.00835 4.03147 4.16618 4.21616 4.26785 4.38455 4.44767 4.51117 4.69656 4.76153 4.80419 4.98605 5.00392 5.11785 5.21195 5.24725 5.43769 5.49261 5.67134 5.71165 5.73051 5.90033 6.04615 6.15291 6.64692 6.74010 7.02129 7.25062 7.40059 8.85636 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.003890 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.096666 B = 7196.473888 C = 7924.605955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.190 4.190 3 C 0.135 3.865 4 N -0.596 5.596 5 C 0.263 3.737 6 C -0.540 4.540 7 H 0.060 0.940 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.972 3.028 11 H -0.261 1.261 12 H -0.272 1.272 13 H -0.283 1.283 14 C 0.504 3.496 15 O -0.592 6.592 16 C -0.133 4.133 17 C 0.112 3.888 18 N -0.492 5.492 19 C 0.125 3.875 20 C -0.224 4.224 21 C 0.009 3.991 22 C -0.280 4.280 23 C 0.490 3.510 24 O -0.615 6.615 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.019 0.981 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.196 0.804 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.650 -4.237 -23.158 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.209 4.209 3 C 0.013 3.987 4 N -0.326 5.326 5 C 0.142 3.858 6 C -0.579 4.579 7 H 0.079 0.921 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.796 3.204 11 H -0.185 1.185 12 H -0.197 1.197 13 H -0.209 1.209 14 C 0.292 3.708 15 O -0.473 6.473 16 C -0.174 4.174 17 C -0.010 4.010 18 N -0.201 5.201 19 C -0.001 4.001 20 C -0.246 4.246 21 C -0.013 4.013 22 C -0.302 4.302 23 C 0.295 3.705 24 O -0.503 6.503 25 H 0.123 0.877 26 H 0.131 0.869 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.127 0.873 30 H 0.037 0.963 31 H 0.013 0.987 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.213 0.787 38 H 0.202 0.798 39 H 0.188 0.812 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.637 -4.624 -21.941 23.688 hybrid contribution -0.205 0.416 1.044 1.142 sum 7.432 -4.208 -20.897 22.575 Atomic orbital electron populations 1.24055 0.95401 1.02981 0.97931 1.23334 0.96993 0.98315 1.02262 1.20833 0.92794 0.96000 0.89079 1.48202 1.11603 1.59552 1.13246 1.18726 0.93771 0.93063 0.80258 1.21733 1.40536 0.94017 1.01577 0.92145 1.25923 0.94625 1.04007 0.94823 1.70086 1.42889 1.38197 1.05891 0.85308 0.78113 0.78656 0.78360 1.18494 1.19686 1.20940 1.20914 0.81796 0.77563 0.90505 1.90658 1.53998 1.58517 1.44157 1.21855 0.97084 1.03172 0.95248 1.21537 0.95228 1.00625 0.83626 1.45598 1.49041 1.09524 1.15889 1.22784 0.90857 0.97636 0.88786 1.21207 1.09047 0.96862 0.97520 1.21900 0.87681 0.92963 0.98706 1.22102 1.11217 1.02789 0.94057 1.17804 0.81410 0.81117 0.90169 1.90943 1.49983 1.58064 1.51305 0.87692 0.86885 0.87978 0.89864 0.87318 0.96304 0.98749 0.92474 0.85158 0.88587 0.91076 0.86652 0.78748 0.79774 0.81176 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 14.32 67.78 0.97 -3.28 16 2 C -0.19 -5.52 9.74 25.64 0.25 -5.27 16 3 C 0.13 4.25 5.65 85.63 0.48 4.73 16 4 N -0.60 -25.45 2.44 -830.52 -2.03 -27.47 16 5 C 0.26 14.36 5.16 85.63 0.44 14.80 16 6 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 7 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 8 C 0.00 0.28 5.46 84.66 0.46 0.75 16 9 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 10 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 14 C 0.50 20.89 7.67 87.66 0.67 21.56 16 15 O -0.59 -30.38 15.56 -3.03 -0.05 -30.43 16 16 C -0.13 -3.79 4.58 29.85 0.14 -3.65 16 17 C 0.11 3.13 4.62 86.38 0.40 3.53 16 18 N -0.49 -11.17 2.58 -650.97 -1.68 -12.86 16 19 C 0.13 1.59 10.28 83.42 0.86 2.45 16 20 C -0.22 -1.93 10.01 22.08 0.22 -1.70 16 21 C 0.01 0.10 10.10 22.32 0.23 0.33 16 22 C -0.28 -5.70 9.99 22.40 0.22 -5.48 16 23 C 0.49 14.05 7.41 84.82 0.63 14.67 16 24 O -0.61 -24.23 16.64 -5.49 -0.09 -24.32 16 25 H 0.10 2.56 7.84 -2.91 -0.02 2.54 16 26 H 0.11 2.47 8.06 -2.91 -0.02 2.45 16 27 H 0.10 3.03 7.83 -2.91 -0.02 3.01 16 28 H 0.08 2.70 7.72 -2.39 -0.02 2.68 16 29 H 0.11 2.59 6.44 -2.39 -0.02 2.57 16 30 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 31 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.13 2.68 7.40 -2.39 -0.02 2.66 16 34 H 0.10 2.79 7.77 -2.39 -0.02 2.77 16 35 H 0.07 2.55 7.35 -2.39 -0.02 2.53 16 36 H 0.12 2.84 7.97 -2.39 -0.02 2.82 16 37 H 0.20 1.14 8.04 -2.91 -0.02 1.12 16 38 H 0.19 0.19 8.06 -2.91 -0.02 0.17 16 39 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 40 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -84.63 347.94 5.70 -78.94 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.02 Total: 13.34 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.21 Total: 12.96 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -3.42 Total: -96.66 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -0.14 Total: -54.75 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -84.63 5.70 -78.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.672 kcal (2) G-P(sol) polarization free energy of solvation -84.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds