Wall clock time and date at job start Tue Mar 31 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47064 * 2 1 4 4 C 1.38620 * 120.76097 * 270.02508 * 3 2 1 5 5 C 1.38560 * 119.35475 * 179.97438 * 4 3 2 6 6 N 1.31524 * 120.90130 * 359.74206 * 5 4 3 7 7 C 1.32716 * 121.64053 * 0.52802 * 6 5 4 8 8 C 1.48172 * 119.72118 * 179.75115 * 7 6 5 9 9 O 1.21510 * 119.99841 * 179.73042 * 8 7 6 10 10 N 1.34779 * 119.99756 * 359.72327 * 8 7 6 11 11 C 1.47021 * 125.65165 * 359.97438 * 10 8 7 12 12 C 1.54320 * 107.27383 * 178.97713 * 11 10 8 13 13 C 1.55163 * 102.94147 * 337.80980 * 12 11 10 14 14 O 1.42905 * 111.00244 * 277.42891 * 13 12 11 15 15 C 1.50698 * 111.00660 * 153.61367 * 13 12 11 16 16 H 1.08002 * 119.99847 * 3.18328 * 15 13 12 17 17 C 1.37871 * 120.00404 * 183.17791 * 15 13 12 18 18 N 1.31519 * 119.99458 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00501 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46881 * 89.99887 * 19 17 15 21 21 H 1.48496 * 109.47331 * 210.00304 * 19 17 15 22 22 H 1.48503 * 109.47049 * 330.00501 * 19 17 15 23 23 C 1.47524 * 125.63317 * 180.02562 * 10 8 7 24 24 C 1.38590 * 120.75092 * 90.00327 * 3 2 1 25 25 H 1.08998 * 109.46759 * 299.99110 * 1 2 3 26 26 H 1.08991 * 109.47211 * 59.99322 * 1 2 3 27 27 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46518 * 240.00458 * 2 1 3 29 29 H 1.08996 * 109.47659 * 120.00816 * 2 1 3 30 30 H 1.08004 * 120.32239 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.54823 * 180.02562 * 5 4 3 32 32 H 1.09008 * 109.87829 * 59.55894 * 11 10 8 33 33 H 1.09003 * 110.01182 * 298.46925 * 11 10 8 34 34 H 1.09002 * 110.72325 * 219.44906 * 12 11 10 35 35 H 1.08996 * 110.71901 * 96.16983 * 12 11 10 36 36 H 0.96696 * 114.00036 * 176.81949 * 14 13 12 37 37 H 0.97010 * 119.99713 * 180.02562 * 18 17 15 38 38 H 1.09004 * 110.36953 * 85.27503 * 23 10 8 39 39 H 1.09001 * 110.41107 * 322.91781 * 23 10 8 40 40 H 1.08005 * 120.47387 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0894 -1.1912 5 6 2.7294 3.3956 -1.1572 6 7 2.9405 4.0078 -0.0124 7 6 2.7322 3.4019 1.1499 8 6 2.9892 4.1303 2.4144 9 8 2.7955 3.5821 3.4814 10 7 3.4378 5.4007 2.3810 11 6 3.7139 6.1804 1.1655 12 6 4.1803 7.5809 1.6155 13 6 3.6002 7.6960 3.0501 14 8 2.2309 8.1036 3.0177 15 6 4.4217 8.6390 3.8909 16 1 5.2556 9.1667 3.4521 17 6 4.1087 8.8282 5.2202 18 7 3.0934 8.1853 5.7545 19 14 5.1274 9.9965 6.2626 20 1 4.5461 11.3611 6.1882 21 1 5.1233 9.5329 7.6733 22 1 6.5226 10.0246 5.7548 23 6 3.7341 6.2388 3.5584 24 6 2.2686 2.0889 1.1910 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5139 0.8898 30 1 2.0933 1.5973 -2.1366 31 1 2.9138 3.9196 -2.0834 32 1 2.8073 6.2663 0.5664 33 1 4.4987 5.6977 0.5830 34 1 3.7638 8.3526 0.9681 35 1 5.2686 7.6375 1.6340 36 1 1.8114 8.1423 3.8880 37 1 2.8729 8.3186 6.6898 38 1 4.7482 6.0519 3.9117 39 1 3.0132 6.0465 4.3530 40 1 2.0958 1.5985 2.1377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:20 Heat of formation + Delta-G solvation = -50.062328 kcal Electronic energy + Delta-G solvation = -23161.802583 eV Core-core repulsion = 19748.361325 eV Total energy + Delta-G solvation = -3413.441259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56409 -38.86223 -37.06707 -35.20410 -34.13396 -32.15371 -31.42121 -30.56518 -29.91027 -27.73157 -25.66002 -24.73953 -23.72804 -22.54936 -21.61687 -19.60592 -18.99819 -17.23355 -16.87589 -16.53031 -15.99238 -15.24781 -15.19510 -15.00915 -14.55967 -14.24672 -14.15196 -13.83013 -13.65268 -12.96076 -12.93664 -12.77376 -12.55776 -12.26108 -11.80086 -11.76892 -11.55394 -11.38942 -11.22959 -11.02016 -10.73095 -10.47462 -10.43688 -10.14410 -9.89818 -9.63973 -9.32111 -9.17515 -9.14274 -8.64621 -8.32192 -7.70241 -6.25203 -4.34561 0.74679 1.17133 3.09186 3.22707 3.30287 3.32914 3.55787 4.02932 4.26279 4.30552 4.43468 4.60313 4.90163 4.97048 5.02337 5.04611 5.08191 5.21893 5.42388 5.56698 5.61647 5.64314 5.74593 5.84353 5.91294 5.92954 5.99616 6.16067 6.24507 6.43884 6.61050 6.62800 6.82022 6.94459 7.05685 7.30164 7.39511 7.77570 7.82250 8.05466 8.25122 8.67858 8.72656 9.34596 9.45968 10.82024 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033582 B = 0.003743 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.575131 B = 7479.181340 C = 7924.106928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.049 4.049 4 C -0.159 4.159 5 C 0.096 3.904 6 N -0.453 5.453 7 C 0.098 3.902 8 C 0.567 3.433 9 O -0.549 6.549 10 N -0.585 5.585 11 C 0.124 3.876 12 C -0.124 4.124 13 C 0.249 3.751 14 O -0.582 6.582 15 C -0.536 4.536 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.092 3.908 24 C -0.115 4.115 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.160 0.840 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.383 0.617 37 H 0.270 0.730 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -12.990 -13.479 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.057 4.057 4 C -0.180 4.180 5 C -0.063 4.063 6 N -0.165 5.165 7 C -0.041 4.041 8 C 0.354 3.646 9 O -0.428 6.428 10 N -0.314 5.314 11 C 0.001 3.999 12 C -0.162 4.162 13 C 0.208 3.792 14 O -0.392 6.392 15 C -0.575 4.575 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.029 4.029 24 C -0.136 4.136 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.153 0.847 31 H 0.177 0.823 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.233 0.767 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.910 -12.453 -13.333 18.344 hybrid contribution 0.122 -0.294 1.130 1.174 sum -1.787 -12.747 -12.203 17.737 Atomic orbital electron populations 1.21754 0.94153 1.02058 1.02589 1.20575 0.96599 0.91574 1.03465 1.20303 0.96026 0.96692 0.92702 1.22184 1.00783 0.96420 0.98564 1.22850 0.95194 0.92009 0.96242 1.67936 1.13723 1.36936 0.97908 1.21374 0.97857 0.92270 0.92569 1.17511 0.78862 0.81189 0.87086 1.90748 1.54432 1.67483 1.30117 1.48629 1.60959 1.11194 1.10656 1.22018 1.00248 0.91242 0.86402 1.22731 1.00265 0.94839 0.98368 1.19618 0.81074 0.88507 0.90011 1.86098 1.26304 1.90760 1.35988 1.21498 1.15077 1.26091 0.94805 0.91478 1.25090 0.95045 0.95341 0.97819 1.69664 1.27726 1.41583 1.14367 0.86397 0.80467 0.80779 0.79212 1.20406 1.21033 1.19701 1.23382 1.00664 0.91655 0.87186 1.22004 0.97722 0.94450 0.99434 0.92166 0.92447 0.92012 0.90494 0.90323 0.84722 0.82265 0.91385 0.92083 0.90812 0.90675 0.76683 0.91981 0.91894 0.89639 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.75 16 2 C -0.08 -0.68 6.11 -27.88 -0.17 -0.85 16 3 C -0.05 -0.54 5.17 -104.35 -0.54 -1.08 16 4 C -0.16 -1.57 9.82 -39.32 -0.39 -1.96 16 5 C 0.10 1.11 11.18 -17.56 -0.20 0.92 16 6 N -0.45 -7.09 6.85 -9.80 -0.07 -7.15 16 7 C 0.10 1.70 6.72 -83.01 -0.56 1.14 16 8 C 0.57 12.25 7.84 -12.18 -0.10 12.16 16 9 O -0.55 -13.23 16.58 5.36 0.09 -13.14 16 10 N -0.58 -12.94 3.33 -171.42 -0.57 -13.51 16 11 C 0.12 2.41 5.40 -3.07 -0.02 2.40 16 12 C -0.12 -2.58 6.13 -24.90 -0.15 -2.74 16 13 C 0.25 6.18 0.88 -89.62 -0.08 6.10 16 14 O -0.58 -15.30 13.17 -35.23 -0.46 -15.76 16 15 C -0.54 -14.15 8.26 -34.44 -0.28 -14.43 16 16 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 17 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 18 N -0.89 -24.14 10.69 55.43 0.59 -23.55 16 19 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.09 2.29 5.51 -2.47 -0.01 2.28 16 24 C -0.12 -1.67 9.34 -39.05 -0.36 -2.04 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.07 1.32 7.41 -51.92 -0.38 0.93 16 33 H 0.06 1.08 7.54 -51.93 -0.39 0.69 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 36 H 0.38 10.31 7.25 45.56 0.33 10.64 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.06 1.59 8.03 -51.93 -0.42 1.17 16 39 H 0.09 2.36 7.48 -51.93 -0.39 1.97 16 40 H 0.15 2.09 7.64 -52.48 -0.40 1.69 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -30.54 333.36 -7.99 -38.53 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -4.99 Total: 11.17 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.58 Total: 2.90 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.05 Total: -44.22 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.38 Total: -28.90 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.54 -7.99 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.537 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds