Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47064 * 2 1 4 4 C 1.38620 * 120.76097 * 270.02508 * 3 2 1 5 5 C 1.38560 * 119.35475 * 179.97438 * 4 3 2 6 6 N 1.31524 * 120.90130 * 359.74206 * 5 4 3 7 7 C 1.32716 * 121.64053 * 0.52802 * 6 5 4 8 8 C 1.48172 * 119.72118 * 179.75115 * 7 6 5 9 9 O 1.21510 * 119.99841 * 179.73042 * 8 7 6 10 10 N 1.34779 * 119.99756 * 359.72327 * 8 7 6 11 11 C 1.47021 * 125.65165 * 359.97438 * 10 8 7 12 12 C 1.54320 * 107.27383 * 178.97713 * 11 10 8 13 13 C 1.55163 * 102.94147 * 337.80980 * 12 11 10 14 14 O 1.42905 * 111.00244 * 277.42891 * 13 12 11 15 15 C 1.50698 * 111.00660 * 153.61367 * 13 12 11 16 16 H 1.08002 * 119.99847 * 3.18328 * 15 13 12 17 17 C 1.37871 * 120.00404 * 183.17791 * 15 13 12 18 18 N 1.31519 * 119.99458 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00501 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46881 * 89.99887 * 19 17 15 21 21 H 1.48496 * 109.47331 * 210.00304 * 19 17 15 22 22 H 1.48503 * 109.47049 * 330.00501 * 19 17 15 23 23 C 1.47524 * 125.63317 * 180.02562 * 10 8 7 24 24 C 1.38590 * 120.75092 * 90.00327 * 3 2 1 25 25 H 1.08998 * 109.46759 * 299.99110 * 1 2 3 26 26 H 1.08991 * 109.47211 * 59.99322 * 1 2 3 27 27 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46518 * 240.00458 * 2 1 3 29 29 H 1.08996 * 109.47659 * 120.00816 * 2 1 3 30 30 H 1.08004 * 120.32239 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.54823 * 180.02562 * 5 4 3 32 32 H 1.09008 * 109.87829 * 59.55894 * 11 10 8 33 33 H 1.09003 * 110.01182 * 298.46925 * 11 10 8 34 34 H 1.09002 * 110.72325 * 219.44906 * 12 11 10 35 35 H 1.08996 * 110.71901 * 96.16983 * 12 11 10 36 36 H 0.96696 * 114.00036 * 176.81949 * 14 13 12 37 37 H 0.97010 * 119.99713 * 180.02562 * 18 17 15 38 38 H 1.09004 * 110.36953 * 85.27503 * 23 10 8 39 39 H 1.09001 * 110.41107 * 322.91781 * 23 10 8 40 40 H 1.08005 * 120.47387 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0894 -1.1912 5 6 2.7294 3.3956 -1.1572 6 7 2.9405 4.0078 -0.0124 7 6 2.7322 3.4019 1.1499 8 6 2.9892 4.1303 2.4144 9 8 2.7955 3.5821 3.4814 10 7 3.4378 5.4007 2.3810 11 6 3.7139 6.1804 1.1655 12 6 4.1803 7.5809 1.6155 13 6 3.6002 7.6960 3.0501 14 8 2.2309 8.1036 3.0177 15 6 4.4217 8.6390 3.8909 16 1 5.2556 9.1667 3.4521 17 6 4.1087 8.8282 5.2202 18 7 3.0934 8.1853 5.7545 19 14 5.1274 9.9965 6.2626 20 1 4.5461 11.3611 6.1882 21 1 5.1233 9.5329 7.6733 22 1 6.5226 10.0246 5.7548 23 6 3.7341 6.2388 3.5584 24 6 2.2686 2.0889 1.1910 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8935 -0.5139 0.8898 30 1 2.0933 1.5973 -2.1366 31 1 2.9138 3.9196 -2.0834 32 1 2.8073 6.2663 0.5664 33 1 4.4987 5.6977 0.5830 34 1 3.7638 8.3526 0.9681 35 1 5.2686 7.6375 1.6340 36 1 1.8114 8.1423 3.8880 37 1 2.8729 8.3186 6.6898 38 1 4.7482 6.0519 3.9117 39 1 3.0132 6.0465 4.3530 40 1 2.0958 1.5985 2.1377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = -70.918707 kcal Electronic energy + Delta-G solvation = -23162.706984 eV Core-core repulsion = 19748.361325 eV Total energy + Delta-G solvation = -3414.345659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77867 -40.40670 -38.87250 -36.30184 -35.76811 -34.21167 -32.60229 -31.74924 -31.23448 -29.57466 -27.43761 -25.77123 -25.00140 -23.88787 -22.72679 -21.48786 -20.44711 -19.15729 -18.35711 -17.69274 -17.14419 -16.93334 -16.82512 -16.51894 -16.19476 -15.55999 -15.27671 -14.91839 -14.71553 -14.61571 -14.54629 -14.31221 -13.75890 -13.51340 -13.42965 -13.23553 -12.93943 -12.84934 -12.57644 -12.34915 -12.29367 -12.22421 -12.07760 -11.87680 -11.43677 -11.19719 -10.69424 -10.57393 -10.37208 -10.32206 -10.22729 -9.49491 -8.26132 -6.43662 -0.36039 0.23340 1.42215 1.43607 1.54075 1.69085 1.98251 2.38189 2.84092 2.99777 3.09821 3.56908 3.72800 3.82772 3.99686 4.03503 4.12802 4.16281 4.30156 4.41663 4.44478 4.50856 4.61651 4.71091 4.78486 4.85540 4.94559 4.99857 5.01877 5.08795 5.10287 5.30942 5.35038 5.37576 5.41264 5.45135 5.67643 5.74313 6.04090 6.53692 6.64899 6.76093 7.08166 7.27439 7.34547 8.79705 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033582 B = 0.003743 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.575131 B = 7479.181340 C = 7924.106928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.046 4.046 4 C -0.133 4.133 5 C 0.094 3.906 6 N -0.476 5.476 7 C 0.064 3.936 8 C 0.558 3.442 9 O -0.591 6.591 10 N -0.594 5.594 11 C 0.136 3.864 12 C -0.118 4.118 13 C 0.233 3.767 14 O -0.589 6.589 15 C -0.556 4.556 16 H 0.071 0.929 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.968 3.032 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.264 1.264 23 C 0.106 3.894 24 C -0.124 4.124 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.183 0.817 31 H 0.198 0.802 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.375 0.625 37 H 0.270 0.730 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 -14.038 -16.893 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.054 4.054 4 C -0.153 4.153 5 C -0.066 4.066 6 N -0.188 5.188 7 C -0.072 4.072 8 C 0.347 3.653 9 O -0.473 6.473 10 N -0.323 5.323 11 C 0.014 3.986 12 C -0.156 4.156 13 C 0.193 3.807 14 O -0.397 6.397 15 C -0.594 4.594 16 H 0.089 0.911 17 C -0.177 4.177 18 N -0.558 5.558 19 Si 0.793 3.207 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.017 4.017 24 C -0.145 4.145 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.200 0.800 31 H 0.215 0.785 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.224 0.776 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.464 -13.500 -16.779 21.586 hybrid contribution -0.070 -0.078 2.076 2.078 sum -1.534 -13.578 -14.703 20.073 Atomic orbital electron populations 1.21759 0.93778 1.03052 1.01904 1.20671 0.96739 0.89595 1.04934 1.20686 0.94944 0.98053 0.91742 1.22714 0.97231 0.95482 0.99831 1.23567 0.94044 0.93034 0.95930 1.67777 1.14765 1.37933 0.98325 1.20729 1.01961 0.93084 0.91456 1.18335 0.77516 0.80855 0.88582 1.90694 1.55985 1.68340 1.32276 1.48703 1.61559 1.11643 1.10443 1.22035 1.01051 0.90174 0.85356 1.22753 1.00928 0.96058 0.95815 1.19860 0.80338 0.87914 0.92583 1.86086 1.27287 1.90892 1.35415 1.21811 1.15496 1.26590 0.95487 0.91075 1.25881 0.96029 0.96751 0.98992 1.69790 1.28926 1.42567 1.14501 0.85396 0.79246 0.78704 0.77333 1.19908 1.21109 1.18851 1.22952 0.98474 0.92803 0.87479 1.22022 0.98114 0.93680 1.00677 0.94266 0.91730 0.90244 0.87454 0.90496 0.79953 0.78489 0.91073 0.89760 0.89680 0.89326 0.77609 0.92061 0.93373 0.93583 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.90 71.98 0.71 -1.10 16 2 C -0.08 -1.04 6.11 29.85 0.18 -0.86 16 3 C -0.05 -0.90 5.17 -19.69 -0.10 -1.00 16 4 C -0.13 -1.98 9.82 22.44 0.22 -1.76 16 5 C 0.09 1.80 11.18 84.82 0.95 2.75 16 6 N -0.48 -14.12 6.85 -184.91 -1.27 -15.38 16 7 C 0.06 2.25 6.72 41.91 0.28 2.53 16 8 C 0.56 25.39 7.84 86.88 0.68 26.07 16 9 O -0.59 -30.65 16.58 -3.75 -0.06 -30.71 16 10 N -0.59 -27.32 3.33 -814.54 -2.71 -30.03 16 11 C 0.14 5.24 5.40 86.73 0.47 5.70 16 12 C -0.12 -4.85 6.13 31.78 0.19 -4.65 16 13 C 0.23 11.91 0.88 -10.14 -0.01 11.90 16 14 O -0.59 -31.96 13.17 -148.98 -1.96 -33.92 16 15 C -0.56 -29.78 8.26 25.60 0.21 -29.57 16 16 H 0.07 3.66 7.78 -2.91 -0.02 3.64 16 17 C 0.02 1.29 5.29 84.65 0.45 1.73 16 18 N -0.92 -51.49 10.69 21.45 0.23 -51.26 16 19 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 C 0.11 5.53 5.51 86.84 0.48 6.01 16 24 C -0.12 -3.59 9.34 22.61 0.21 -3.38 16 25 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.11 0.77 8.10 -2.39 -0.02 0.75 16 29 H 0.08 1.03 8.10 -2.39 -0.02 1.01 16 30 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.07 2.70 7.41 -2.38 -0.02 2.68 16 33 H 0.08 2.86 7.54 -2.39 -0.02 2.84 16 34 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 36 H 0.37 21.24 7.25 -74.06 -0.54 20.70 16 37 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 38 H 0.05 2.59 8.03 -2.38 -0.02 2.57 16 39 H 0.05 2.73 7.48 -2.39 -0.02 2.71 16 40 H 0.13 4.04 7.64 -2.91 -0.02 4.02 16 Total: -1.00 -70.88 333.36 1.69 -69.19 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.51 Total: 33.15 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 4.93 Total: 14.38 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -3.75 Total: -96.68 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: -2.02 Total: -64.63 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -70.88 1.69 -69.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.733 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds