Wall clock time and date at job start Tue Mar 31 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46891 * 2 1 4 4 C 1.38631 * 120.47122 * 258.16655 * 3 2 1 5 5 C 1.38579 * 118.48683 * 179.97438 * 4 3 2 6 6 C 1.38599 * 119.35664 * 0.02562 * 5 4 3 7 7 N 1.31500 * 120.89769 * 0.02562 * 6 5 4 8 8 C 1.32750 * 121.64400 * 359.97438 * 7 6 5 9 9 C 1.48160 * 119.72332 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00606 * 185.34856 * 9 8 7 11 11 N 1.34780 * 120.00274 * 5.34827 * 9 8 7 12 12 C 1.47031 * 125.64524 * 359.69081 * 11 9 8 13 13 C 1.54329 * 107.26475 * 178.84615 * 12 11 9 14 14 C 1.55155 * 103.02294 * 338.14217 * 13 12 11 15 15 O 1.42899 * 111.00326 * 277.23218 * 14 13 12 16 16 C 1.50705 * 111.00530 * 153.38135 * 14 13 12 17 17 H 1.08003 * 119.99761 * 6.34591 * 16 14 13 18 18 C 1.37870 * 119.99927 * 186.35107 * 16 14 13 19 19 N 1.31522 * 120.00249 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00048 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.47038 * 89.99824 * 20 18 16 22 22 H 1.48498 * 109.47501 * 209.99884 * 20 18 16 23 23 H 1.48496 * 109.47367 * 330.00287 * 20 18 16 24 24 C 1.47425 * 125.65430 * 179.97438 * 11 9 8 25 25 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47016 * 299.99737 * 1 2 3 27 27 H 1.08994 * 109.46981 * 60.00371 * 1 2 3 28 28 H 1.08996 * 109.47478 * 240.00059 * 2 1 3 29 29 H 1.09000 * 109.47386 * 119.99730 * 2 1 3 30 30 H 1.07995 * 120.75140 * 359.71020 * 4 3 2 31 31 H 1.08003 * 120.32430 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.55275 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.88089 * 298.39798 * 12 11 9 34 34 H 1.09003 * 109.88028 * 59.55499 * 12 11 9 35 35 H 1.09001 * 110.85118 * 219.66785 * 13 12 11 36 36 H 1.09003 * 110.66722 * 96.52340 * 13 12 11 37 37 H 0.96697 * 114.00205 * 173.65146 * 15 14 13 38 38 H 0.96995 * 120.00252 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36105 * 322.92930 * 24 11 9 40 40 H 1.08990 * 110.36499 * 85.14014 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4976 2.0020 -1.1694 5 6 2.9495 3.3113 -1.1226 6 6 2.9239 3.9962 0.0821 7 7 2.4781 3.4202 1.1770 8 6 2.0365 2.1683 1.1751 9 6 1.5441 1.5612 2.4337 10 8 1.2302 0.3876 2.4601 11 7 1.4443 2.3106 3.5495 12 6 1.7943 3.7344 3.6596 13 6 1.4897 4.1703 5.1084 14 6 0.4616 3.1099 5.5837 15 8 -0.8585 3.4475 5.1532 16 6 0.5127 2.9408 7.0803 17 1 1.1316 3.5947 7.6768 18 6 -0.2305 1.9512 7.6880 19 7 -0.9845 1.1552 6.9617 20 14 -0.1666 1.7411 9.5430 21 1 -1.2219 2.5753 10.1723 22 1 -0.3923 0.3145 9.8877 23 1 1.1649 2.1667 10.0439 24 6 0.9716 1.8371 4.8632 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.5117 1.4456 -2.0949 31 1 3.3179 3.7933 -2.0161 32 1 3.2756 5.0164 0.1223 33 1 2.8535 3.8735 3.4433 34 1 1.1920 4.3190 2.9641 35 1 1.0521 5.1684 5.1294 36 1 2.3919 4.1334 5.7189 37 1 -1.5197 2.7676 5.3419 38 1 -1.5071 0.4588 7.3892 39 1 0.1596 1.1207 4.7385 40 1 1.7919 1.3863 5.4215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:16 Heat of formation + Delta-G solvation = -41.996054 kcal Electronic energy + Delta-G solvation = -23796.941787 eV Core-core repulsion = 20383.850308 eV Total energy + Delta-G solvation = -3413.091479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66722 -38.76775 -37.18098 -34.77612 -33.83965 -32.19983 -32.18330 -30.25685 -29.48257 -27.70565 -25.65878 -24.19808 -24.05892 -22.27538 -21.34292 -19.63930 -19.37189 -17.27068 -16.93855 -16.53482 -15.76549 -15.25917 -15.14109 -15.01609 -14.50770 -14.07458 -13.86248 -13.51604 -13.28454 -12.91752 -12.87467 -12.77449 -12.71293 -12.06233 -11.77516 -11.59119 -11.45513 -11.22872 -11.01343 -10.80505 -10.73519 -10.44610 -10.43628 -10.15830 -9.83514 -9.67310 -9.25779 -9.03177 -8.92040 -8.64885 -8.30791 -7.68534 -6.24798 -4.34250 0.76300 1.21154 3.12231 3.22674 3.30298 3.32899 3.58826 4.02486 4.27466 4.33667 4.70228 4.77017 4.89569 4.95454 5.02878 5.28819 5.44607 5.51457 5.62558 5.63967 5.83706 5.90345 5.93002 5.98127 6.05651 6.14350 6.23567 6.41854 6.46907 6.56958 6.63165 6.68913 6.81801 6.95039 7.08370 7.29802 7.39873 7.77170 7.83122 8.06756 8.27010 8.68783 8.74873 9.33532 9.41912 10.82274 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.004625 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.812236 B = 6052.152087 C = 6750.733128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.074 4.074 4 C -0.088 4.088 5 C -0.155 4.155 6 C 0.084 3.916 7 N -0.447 5.447 8 C 0.089 3.911 9 C 0.568 3.432 10 O -0.538 6.538 11 N -0.586 5.586 12 C 0.123 3.877 13 C -0.124 4.124 14 C 0.248 3.752 15 O -0.582 6.582 16 C -0.537 4.537 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.094 3.906 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.380 0.620 38 H 0.269 0.731 39 H 0.088 0.912 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 2.506 -14.872 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.077 4.077 4 C -0.114 4.114 5 C -0.175 4.175 6 C -0.075 4.075 7 N -0.158 5.158 8 C -0.049 4.049 9 C 0.354 3.646 10 O -0.418 6.418 11 N -0.316 5.316 12 C 0.000 4.000 13 C -0.162 4.162 14 C 0.208 3.792 15 O -0.390 6.390 16 C -0.575 4.575 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.532 5.532 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.027 4.027 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.176 0.824 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.229 0.771 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.728 2.691 -14.265 16.000 hybrid contribution -0.164 -0.975 0.236 1.016 sum 6.564 1.716 -14.029 15.584 Atomic orbital electron populations 1.21615 0.94166 1.01872 1.01585 1.20769 0.97003 0.91007 1.03746 1.20971 0.96213 0.98041 0.92471 1.21500 0.96962 0.95080 0.97866 1.22297 1.00169 0.95374 0.99702 1.22826 0.96558 1.00206 0.87932 1.67913 1.07854 1.09778 1.30246 1.21232 0.98991 0.90477 0.94242 1.17478 0.79594 0.85517 0.81976 1.90690 1.51516 1.15312 1.84254 1.48647 1.61023 1.11601 1.10318 1.22015 0.99523 0.81035 0.97386 1.22725 0.99407 1.00082 0.93991 1.19621 0.80504 0.87506 0.91575 1.86121 1.19537 1.48864 1.84516 1.21484 1.28048 1.16578 0.91390 0.91531 1.25075 0.94314 0.94748 0.99063 1.69720 1.28155 1.19435 1.35896 0.86417 0.78637 0.77365 0.84559 1.20413 1.21042 1.19708 1.23322 0.99220 1.00679 0.79483 0.92380 0.91618 0.93981 0.92153 0.87333 0.84543 0.84665 0.82374 0.91809 0.91817 0.90903 0.90656 0.77057 0.92052 0.89407 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.42 37.16 0.35 -1.60 16 2 C -0.09 -1.23 5.36 -27.88 -0.15 -1.38 16 3 C -0.07 -1.07 5.19 -104.09 -0.54 -1.61 16 4 C -0.09 -0.97 9.81 -39.31 -0.39 -1.36 16 5 C -0.16 -1.53 10.11 -39.32 -0.40 -1.92 16 6 C 0.08 0.98 11.18 -17.56 -0.20 0.79 16 7 N -0.45 -7.01 6.89 -9.80 -0.07 -7.08 16 8 C 0.09 1.54 6.70 -83.01 -0.56 0.98 16 9 C 0.57 11.79 7.41 -12.18 -0.09 11.70 16 10 O -0.54 -11.96 12.05 5.35 0.06 -11.89 16 11 N -0.59 -12.70 3.33 -171.52 -0.57 -13.28 16 12 C 0.12 2.39 5.40 -3.06 -0.02 2.38 16 13 C -0.12 -2.58 6.13 -24.89 -0.15 -2.73 16 14 C 0.25 6.12 0.87 -89.63 -0.08 6.04 16 15 O -0.58 -15.09 13.16 -35.23 -0.46 -15.56 16 16 C -0.54 -14.11 8.27 -34.44 -0.28 -14.39 16 17 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 18 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 19 N -0.89 -23.92 10.69 55.43 0.59 -23.33 16 20 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 24 C 0.09 2.29 5.38 -2.54 -0.01 2.28 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.16 6.47 -51.93 -0.34 0.82 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.67 8.02 -51.93 -0.42 0.25 16 29 H 0.11 1.80 5.90 -51.93 -0.31 1.49 16 30 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 32 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.06 1.13 7.42 -51.93 -0.39 0.75 16 34 H 0.06 1.23 7.55 -51.93 -0.39 0.84 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 37 H 0.38 10.04 7.57 45.56 0.34 10.38 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 40 H 0.06 1.56 8.03 -51.93 -0.42 1.15 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -29.39 324.51 -7.97 -37.36 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.79 Total: 12.50 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.61 Total: 0.95 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.05 Total: -43.68 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.40 Total: -27.45 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.39 -7.97 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.635 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds