Wall clock time and date at job start Tue Mar 31 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46891 * 2 1 4 4 C 1.38631 * 120.47122 * 258.16655 * 3 2 1 5 5 C 1.38579 * 118.48683 * 179.97438 * 4 3 2 6 6 C 1.38599 * 119.35664 * 0.02562 * 5 4 3 7 7 N 1.31500 * 120.89769 * 0.02562 * 6 5 4 8 8 C 1.32750 * 121.64400 * 359.97438 * 7 6 5 9 9 C 1.48160 * 119.72332 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00606 * 185.34856 * 9 8 7 11 11 N 1.34780 * 120.00274 * 5.34827 * 9 8 7 12 12 C 1.47031 * 125.64524 * 359.69081 * 11 9 8 13 13 C 1.54329 * 107.26475 * 178.84615 * 12 11 9 14 14 C 1.55155 * 103.02294 * 338.14217 * 13 12 11 15 15 O 1.42899 * 111.00326 * 277.23218 * 14 13 12 16 16 C 1.50705 * 111.00530 * 153.38135 * 14 13 12 17 17 H 1.08003 * 119.99761 * 6.34591 * 16 14 13 18 18 C 1.37870 * 119.99927 * 186.35107 * 16 14 13 19 19 N 1.31522 * 120.00249 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00048 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.47038 * 89.99824 * 20 18 16 22 22 H 1.48498 * 109.47501 * 209.99884 * 20 18 16 23 23 H 1.48496 * 109.47367 * 330.00287 * 20 18 16 24 24 C 1.47425 * 125.65430 * 179.97438 * 11 9 8 25 25 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47016 * 299.99737 * 1 2 3 27 27 H 1.08994 * 109.46981 * 60.00371 * 1 2 3 28 28 H 1.08996 * 109.47478 * 240.00059 * 2 1 3 29 29 H 1.09000 * 109.47386 * 119.99730 * 2 1 3 30 30 H 1.07995 * 120.75140 * 359.71020 * 4 3 2 31 31 H 1.08003 * 120.32430 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.55275 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.88089 * 298.39798 * 12 11 9 34 34 H 1.09003 * 109.88028 * 59.55499 * 12 11 9 35 35 H 1.09001 * 110.85118 * 219.66785 * 13 12 11 36 36 H 1.09003 * 110.66722 * 96.52340 * 13 12 11 37 37 H 0.96697 * 114.00205 * 173.65146 * 15 14 13 38 38 H 0.96995 * 120.00252 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.36105 * 322.92930 * 24 11 9 40 40 H 1.08990 * 110.36499 * 85.14014 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4976 2.0020 -1.1694 5 6 2.9495 3.3113 -1.1226 6 6 2.9239 3.9962 0.0821 7 7 2.4781 3.4202 1.1770 8 6 2.0365 2.1683 1.1751 9 6 1.5441 1.5612 2.4337 10 8 1.2302 0.3876 2.4601 11 7 1.4443 2.3106 3.5495 12 6 1.7943 3.7344 3.6596 13 6 1.4897 4.1703 5.1084 14 6 0.4616 3.1099 5.5837 15 8 -0.8585 3.4475 5.1532 16 6 0.5127 2.9408 7.0803 17 1 1.1316 3.5947 7.6768 18 6 -0.2305 1.9512 7.6880 19 7 -0.9845 1.1552 6.9617 20 14 -0.1666 1.7411 9.5430 21 1 -1.2219 2.5753 10.1723 22 1 -0.3923 0.3145 9.8877 23 1 1.1649 2.1667 10.0439 24 6 0.9716 1.8371 4.8632 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.5117 1.4456 -2.0949 31 1 3.3179 3.7933 -2.0161 32 1 3.2756 5.0164 0.1223 33 1 2.8535 3.8735 3.4433 34 1 1.1920 4.3190 2.9641 35 1 1.0521 5.1684 5.1294 36 1 2.3919 4.1334 5.7189 37 1 -1.5197 2.7676 5.3419 38 1 -1.5071 0.4588 7.3892 39 1 0.1596 1.1207 4.7385 40 1 1.7919 1.3863 5.4215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:16 Heat of formation + Delta-G solvation = -62.033342 kcal Electronic energy + Delta-G solvation = -23797.810669 eV Core-core repulsion = 20383.850308 eV Total energy + Delta-G solvation = -3413.960361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86700 -40.27904 -38.86234 -36.32640 -35.24931 -34.24997 -33.22258 -31.83390 -30.70284 -29.53529 -27.38623 -25.64572 -25.07540 -23.82876 -22.42601 -21.44837 -20.84504 -19.13679 -18.50751 -17.63028 -17.11390 -16.92977 -16.66334 -16.47145 -16.19346 -15.49484 -15.05417 -14.87925 -14.72280 -14.62563 -14.31129 -14.14321 -13.79080 -13.53188 -13.50124 -13.27050 -12.97280 -12.84044 -12.49380 -12.37326 -12.34026 -12.23798 -12.07973 -11.95056 -11.24823 -10.89741 -10.73679 -10.69063 -10.33165 -10.20339 -10.00945 -9.40469 -8.25186 -6.42899 -0.29371 0.30424 1.41936 1.43416 1.53692 1.78617 2.06229 2.38591 2.88696 3.00740 3.16870 3.64385 3.81568 3.85066 3.96260 4.08447 4.12737 4.22412 4.38005 4.40746 4.48910 4.51037 4.57398 4.73237 4.81868 4.86465 5.01554 5.03092 5.09322 5.11336 5.14588 5.28201 5.37146 5.44770 5.45404 5.48570 5.73183 5.74231 6.06507 6.59954 6.67089 6.82650 7.18131 7.26073 7.33780 8.80342 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.004625 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.812236 B = 6052.152087 C = 6750.733128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.082 4.082 5 C -0.129 4.129 6 C 0.078 3.922 7 N -0.474 5.474 8 C 0.051 3.949 9 C 0.558 3.442 10 O -0.567 6.567 11 N -0.599 5.599 12 C 0.137 3.863 13 C -0.119 4.119 14 C 0.234 3.766 15 O -0.588 6.588 16 C -0.558 4.558 17 H 0.069 0.931 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.966 3.034 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.265 1.265 24 C 0.110 3.890 25 H 0.063 0.937 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.176 0.824 31 H 0.185 0.815 32 H 0.193 0.807 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.372 0.628 38 H 0.269 0.731 39 H 0.050 0.950 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.479 4.079 -17.519 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.108 4.108 5 C -0.148 4.148 6 C -0.082 4.082 7 N -0.185 5.185 8 C -0.085 4.085 9 C 0.347 3.653 10 O -0.448 6.448 11 N -0.330 5.330 12 C 0.015 3.985 13 C -0.157 4.157 14 C 0.194 3.806 15 O -0.396 6.396 16 C -0.596 4.596 17 H 0.087 0.913 18 C -0.174 4.174 19 N -0.555 5.555 20 Si 0.791 3.209 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.012 4.012 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.193 0.807 31 H 0.202 0.798 32 H 0.210 0.790 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.221 0.779 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.485 4.277 -16.924 19.409 hybrid contribution -0.670 -1.433 0.900 1.820 sum 7.816 2.843 -16.024 18.054 Atomic orbital electron populations 1.21551 0.94877 1.01916 1.00402 1.20696 0.96382 0.91429 1.03791 1.21101 0.96712 0.97870 0.92975 1.21951 0.95338 0.95852 0.97651 1.22841 0.96979 0.94486 1.00507 1.23526 0.95423 1.01589 0.87634 1.67747 1.08874 1.09200 1.32701 1.20700 1.02613 0.92063 0.93101 1.18291 0.78680 0.85335 0.83010 1.90664 1.52446 1.16656 1.85020 1.48713 1.61944 1.12580 1.09719 1.21972 1.00592 0.79650 0.96258 1.22743 0.98595 0.99351 0.94963 1.19839 0.80523 0.88997 0.91257 1.86109 1.20154 1.48649 1.84655 1.21796 1.28391 1.16923 0.92457 0.91311 1.25841 0.93938 0.94383 1.03245 1.69847 1.28571 1.19689 1.37405 0.85433 0.78863 0.77130 0.79478 1.19961 1.21028 1.18918 1.22828 0.97230 0.99896 0.81290 0.91787 0.95988 0.91729 0.88421 0.90819 0.80691 0.79806 0.79039 0.89833 0.91737 0.89920 0.89492 0.77920 0.92136 0.93166 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.42 71.98 0.68 -3.12 16 2 C -0.09 -2.36 5.36 29.85 0.16 -2.20 16 3 C -0.08 -2.28 5.19 -19.52 -0.10 -2.39 16 4 C -0.08 -1.43 9.81 22.45 0.22 -1.21 16 5 C -0.13 -1.80 10.11 22.44 0.23 -1.57 16 6 C 0.08 1.52 11.18 84.83 0.95 2.47 16 7 N -0.47 -14.13 6.89 -184.92 -1.27 -15.40 16 8 C 0.05 1.77 6.70 41.89 0.28 2.05 16 9 C 0.56 24.46 7.41 86.88 0.64 25.10 16 10 O -0.57 -27.22 12.05 -3.75 -0.05 -27.26 16 11 N -0.60 -27.25 3.33 -814.85 -2.71 -29.96 16 12 C 0.14 5.36 5.40 86.73 0.47 5.83 16 13 C -0.12 -4.95 6.13 31.78 0.19 -4.76 16 14 C 0.23 11.94 0.87 -10.15 -0.01 11.94 16 15 O -0.59 -31.79 13.16 -148.98 -1.96 -33.75 16 16 C -0.56 -30.02 8.27 25.60 0.21 -29.81 16 17 H 0.07 3.58 7.79 -2.91 -0.02 3.56 16 18 C 0.03 1.44 5.29 84.65 0.45 1.89 16 19 N -0.92 -51.19 10.69 21.45 0.23 -50.96 16 20 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.11 5.73 5.38 86.85 0.47 6.20 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.02 0.81 6.47 -2.39 -0.02 0.79 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.90 8.02 -2.39 -0.02 1.89 16 29 H 0.07 2.57 5.90 -2.39 -0.01 2.55 16 30 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.19 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.08 2.91 7.42 -2.39 -0.02 2.89 16 34 H 0.06 2.49 7.55 -2.39 -0.02 2.47 16 35 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 37 H 0.37 20.88 7.57 -74.06 -0.56 20.31 16 38 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.05 2.94 7.33 -2.39 -0.02 2.92 16 40 H 0.04 2.35 8.03 -2.39 -0.02 2.33 16 Total: -1.00 -69.40 324.51 1.60 -67.80 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.50 Total: 34.49 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 4.84 Total: 10.42 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.75 Total: -96.32 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -2.01 Total: -61.02 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -69.40 1.60 -67.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.768 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds