Wall clock time and date at job start Tue Mar 31 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47587 * 2 1 4 4 C 1.38347 * 120.34759 * 89.99486 * 3 2 1 5 5 N 1.31930 * 121.08044 * 179.97438 * 4 3 2 6 6 C 1.31698 * 121.87531 * 0.02562 * 5 4 3 7 7 C 1.39516 * 120.56903 * 359.97438 * 6 5 4 8 8 C 1.47839 * 120.56140 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00245 * 204.35276 * 8 7 6 10 10 N 1.34780 * 120.00165 * 24.34880 * 8 7 6 11 11 C 1.47429 * 125.64315 * 5.52322 * 10 8 7 12 12 C 1.55135 * 104.72006 * 155.81613 * 11 10 8 13 13 C 1.55153 * 101.48564 * 37.29497 * 12 11 10 14 14 O 1.42901 * 110.72064 * 82.69537 * 13 12 11 15 15 C 1.50703 * 110.87171 * 205.89941 * 13 12 11 16 16 H 1.08004 * 119.99595 * 355.06458 * 15 13 12 17 17 C 1.37878 * 119.99928 * 175.06399 * 15 13 12 18 18 N 1.31512 * 120.00187 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99493 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47576 * 60.00116 * 19 17 15 21 21 H 1.48506 * 109.46791 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47200 * 299.99646 * 19 17 15 23 23 C 1.47019 * 125.65361 * 185.82768 * 10 8 7 24 24 C 1.38359 * 120.34663 * 269.98429 * 3 2 1 25 25 H 1.08998 * 109.47011 * 300.00344 * 1 2 3 26 26 H 1.09001 * 109.47150 * 59.99821 * 1 2 3 27 27 H 1.08996 * 109.47669 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47011 * 239.99656 * 2 1 3 29 29 H 1.09001 * 109.47150 * 120.00179 * 2 1 3 30 30 H 1.08002 * 119.46389 * 359.70694 * 4 3 2 31 31 H 1.08000 * 119.71437 * 179.97438 * 6 5 4 32 32 H 1.09001 * 110.36775 * 274.74351 * 11 10 8 33 33 H 1.08995 * 110.36703 * 37.06513 * 11 10 8 34 34 H 1.08998 * 111.19009 * 279.19155 * 12 11 10 35 35 H 1.09000 * 110.93722 * 155.28702 * 12 11 10 36 36 H 0.96703 * 113.99331 * 185.02189 * 14 13 12 37 37 H 0.96993 * 119.99914 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.88046 * 300.44481 * 23 10 8 39 39 H 1.08997 * 109.87931 * 61.45087 * 23 10 8 40 40 H 1.08001 * 120.85258 * 0.03268 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2654 2.0798 1.1939 5 7 2.7057 3.3233 1.2108 6 6 2.9424 3.9924 0.1014 7 6 2.7326 3.3988 -1.1437 8 6 2.9990 4.1498 -2.3889 9 8 2.4298 3.8420 -3.4179 10 7 3.8728 5.1760 -2.3833 11 6 4.7139 5.5819 -1.2425 12 6 5.9156 6.3248 -1.8833 13 6 5.2263 7.0760 -3.0528 14 8 4.6342 8.2927 -2.5932 15 6 6.2044 7.3487 -4.1664 16 1 7.2476 7.0982 -4.0422 17 6 5.7674 7.9179 -5.3438 18 7 4.4971 8.2224 -5.4952 19 14 6.9801 8.2565 -6.7237 20 1 7.6096 6.9821 -7.1534 21 1 6.2643 8.8666 -7.8730 22 1 8.0300 9.1896 -6.2422 23 6 4.1407 6.0797 -3.5115 24 6 2.2658 2.0797 -1.1940 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0797 1.5694 2.1274 31 1 3.3020 5.0093 0.1559 32 1 4.1607 6.2495 -0.5819 33 1 5.0589 4.7051 -0.6946 34 1 6.6604 5.6215 -2.2557 35 1 6.3614 7.0257 -1.1776 36 1 4.1253 8.7619 -3.2684 37 1 4.1898 8.6232 -6.3233 38 1 4.4999 5.5080 -4.3672 39 1 3.2311 6.6167 -3.7802 40 1 2.0921 1.5892 -2.1404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:18 Heat of formation + Delta-G solvation = -70.888546 kcal Electronic energy + Delta-G solvation = -23134.157017 eV Core-core repulsion = 19719.812666 eV Total energy + Delta-G solvation = -3414.344351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90202 -40.50711 -38.95427 -36.32982 -35.62132 -34.24985 -33.41480 -31.78580 -30.85119 -29.54479 -27.39462 -25.83474 -24.98322 -24.17463 -22.62191 -21.52996 -20.58815 -19.14957 -18.46087 -17.96846 -17.58149 -17.29557 -16.68477 -16.44963 -16.08809 -15.39482 -15.02943 -14.87679 -14.81637 -14.67746 -14.57514 -14.19652 -13.89333 -13.80620 -13.43893 -13.27783 -13.14099 -12.83122 -12.50979 -12.42596 -12.35487 -12.31976 -12.13770 -11.88003 -11.35014 -11.18949 -10.91398 -10.67138 -10.51643 -10.29711 -10.02198 -9.68839 -8.28271 -6.44110 -0.39494 0.10773 1.41868 1.42538 1.50475 1.66679 1.91081 2.36902 2.71100 2.98386 3.21388 3.46257 3.69242 3.74465 3.78691 3.87688 4.01034 4.06246 4.16103 4.24370 4.43863 4.48117 4.49676 4.55461 4.63951 4.82591 4.93002 4.94500 4.97938 5.06637 5.11498 5.18324 5.30874 5.33163 5.37919 5.46944 5.56278 5.71583 6.03373 6.47736 6.63316 6.77897 6.97543 7.25345 7.33148 8.77706 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031117 B = 0.003752 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.627192 B = 7460.508766 C = 7918.675430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.132 4.132 4 C 0.123 3.877 5 N -0.494 5.494 6 C 0.116 3.884 7 C -0.188 4.188 8 C 0.561 3.439 9 O -0.590 6.590 10 N -0.607 5.607 11 C 0.100 3.900 12 C -0.112 4.112 13 C 0.235 3.765 14 O -0.585 6.585 15 C -0.559 4.559 16 H 0.068 0.932 17 C 0.026 3.974 18 N -0.915 5.915 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.122 3.878 24 C -0.031 4.031 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.197 0.803 31 H 0.174 0.826 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.376 0.624 37 H 0.270 0.730 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 -14.103 13.829 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.134 4.134 4 C -0.034 4.034 5 N -0.202 5.202 6 C -0.041 4.041 7 C -0.193 4.193 8 C 0.351 3.649 9 O -0.472 6.472 10 N -0.338 5.338 11 C -0.022 4.022 12 C -0.150 4.150 13 C 0.194 3.806 14 O -0.393 6.393 15 C -0.597 4.597 16 H 0.086 0.914 17 C -0.175 4.175 18 N -0.554 5.554 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.001 4.001 24 C -0.058 4.058 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.214 0.786 31 H 0.191 0.809 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.225 0.775 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.745 -13.982 14.532 20.511 hybrid contribution -0.100 0.450 -2.929 2.966 sum -3.845 -13.532 11.602 18.235 Atomic orbital electron populations 1.21779 0.94074 1.02935 1.01801 1.20573 0.96475 0.89354 1.04961 1.21200 1.00155 0.99525 0.92522 1.23541 0.91155 0.89654 0.99016 1.67856 1.12673 1.09528 1.30145 1.23620 0.93433 1.00727 0.86273 1.20809 1.07595 0.97113 0.93809 1.18370 0.78644 0.79430 0.88430 1.90718 1.52654 1.68644 1.35211 1.48738 1.39463 1.29376 1.16272 1.22844 0.91370 0.99634 0.88320 1.22819 0.96369 0.98563 0.97242 1.19688 0.88082 0.81210 0.91571 1.86099 1.71948 1.38427 1.42812 1.21807 0.95632 1.42410 0.99875 0.91416 1.25807 0.96952 0.94058 1.00657 1.69788 1.15278 1.42440 1.27933 0.85530 0.78969 0.78538 0.78149 1.19851 1.20999 1.19219 1.22584 0.99024 0.90974 0.87511 1.21713 0.92073 0.91956 1.00040 0.92043 0.94155 0.90340 0.90296 0.87668 0.78637 0.80886 0.89558 0.88319 0.89773 0.88583 0.77511 0.92058 0.94683 0.94576 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.89 71.98 0.71 -1.05 16 2 C -0.08 -0.91 6.08 29.85 0.18 -0.73 16 3 C -0.13 -2.52 5.15 -19.81 -0.10 -2.63 16 4 C 0.12 2.28 10.85 84.70 0.92 3.20 16 5 N -0.49 -12.04 10.35 -194.76 -2.02 -14.06 16 6 C 0.12 3.21 9.26 85.02 0.79 4.00 16 7 C -0.19 -5.96 5.68 -20.00 -0.11 -6.08 16 8 C 0.56 23.13 7.66 86.78 0.66 23.80 16 9 O -0.59 -28.94 17.00 -3.89 -0.07 -29.01 16 10 N -0.61 -25.14 3.32 -814.75 -2.71 -27.85 16 11 C 0.10 3.29 4.99 86.93 0.43 3.72 16 12 C -0.11 -4.22 6.24 32.06 0.20 -4.02 16 13 C 0.23 11.25 0.85 -10.35 -0.01 11.24 16 14 O -0.59 -29.01 13.07 -148.98 -1.95 -30.96 16 15 C -0.56 -29.19 8.13 25.60 0.21 -28.98 16 16 H 0.07 3.43 7.78 -2.91 -0.02 3.41 16 17 C 0.03 1.38 5.28 84.66 0.45 1.83 16 18 N -0.92 -49.77 10.96 21.45 0.24 -49.54 16 19 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C 0.12 6.07 5.24 86.73 0.45 6.52 16 24 C -0.03 -0.84 9.40 22.73 0.21 -0.62 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 29 H 0.10 0.74 8.09 -2.39 -0.02 0.72 16 30 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.17 4.57 4.60 -2.91 -0.01 4.56 16 32 H 0.09 2.62 6.86 -2.39 -0.02 2.61 16 33 H 0.10 2.66 6.81 -2.39 -0.02 2.65 16 34 H 0.08 3.05 8.04 -2.39 -0.02 3.03 16 35 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.38 19.52 7.45 -74.06 -0.55 18.97 16 37 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.03 1.94 7.81 -2.39 -0.02 1.92 16 39 H 0.04 1.98 7.92 -2.39 -0.02 1.97 16 40 H 0.14 3.73 7.91 -2.91 -0.02 3.70 16 Total: -1.00 -66.43 330.60 1.03 -65.40 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.51 Total: 31.75 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 5.00 Total: 10.20 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -4.49 Total: -91.44 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: -2.01 Total: -59.97 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -66.43 1.03 -65.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.486 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds