Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47404 * 2 1 4 4 C 1.38603 * 119.54936 * 124.99840 * 3 2 1 5 5 C 1.38587 * 119.34759 * 180.02562 * 4 3 2 6 6 C 1.38630 * 118.48820 * 0.28013 * 5 4 3 7 7 C 1.39264 * 119.06364 * 359.45280 * 6 5 4 8 8 C 1.48165 * 119.72722 * 180.25557 * 7 6 5 9 9 O 1.21512 * 119.99779 * 0.29946 * 8 7 6 10 10 N 1.34780 * 120.00496 * 180.30043 * 8 7 6 11 11 C 1.47428 * 125.64435 * 0.02663 * 10 8 7 12 12 C 1.54904 * 104.83053 * 204.09225 * 11 10 8 13 13 C 1.55157 * 101.58078 * 322.99042 * 12 11 10 14 14 O 1.42909 * 110.72050 * 277.13879 * 13 12 11 15 15 C 1.50702 * 110.72481 * 154.04647 * 13 12 11 16 16 H 1.07997 * 119.99502 * 359.97438 * 15 13 12 17 17 C 1.37873 * 120.00150 * 180.02562 * 15 13 12 18 18 N 1.31507 * 120.00145 * 359.97438 * 17 15 13 19 19 Si 1.86811 * 119.99744 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46983 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47077 * 119.99943 * 19 17 15 22 22 H 1.48502 * 109.46721 * 239.99788 * 19 17 15 23 23 C 1.47017 * 125.65163 * 179.71505 * 10 8 7 24 24 N 1.31492 * 119.54686 * 305.02368 * 3 2 1 25 25 H 1.08997 * 109.47559 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47059 * 300.00284 * 1 2 3 27 27 H 1.08998 * 109.47292 * 59.99961 * 1 2 3 28 28 H 1.08994 * 109.47241 * 239.99649 * 2 1 3 29 29 H 1.08999 * 109.46846 * 119.99748 * 2 1 3 30 30 H 1.08000 * 120.32317 * 0.04559 * 4 3 2 31 31 H 1.08002 * 120.75096 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.46727 * 179.72671 * 6 5 4 33 33 H 1.09003 * 110.36659 * 322.92903 * 11 10 8 34 34 H 1.08996 * 110.36576 * 85.14099 * 11 10 8 35 35 H 1.09003 * 111.00909 * 81.05956 * 12 11 10 36 36 H 1.08998 * 111.00633 * 204.91709 * 12 11 10 37 37 H 0.96699 * 114.00126 * 179.97438 * 14 13 12 38 38 H 0.97006 * 119.99853 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.88210 * 298.39540 * 23 10 8 40 40 H 1.08999 * 109.87802 * 59.55913 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9123 1.8347 0.9877 5 6 3.3713 3.1424 0.9840 6 6 2.9252 3.9969 -0.0123 7 6 2.0452 3.5112 -0.9762 8 6 1.5636 4.4102 -2.0510 9 8 1.9407 5.5646 -2.0919 10 7 0.7071 3.9477 -2.9832 11 6 0.1708 2.5761 -3.0522 12 6 -0.2138 2.3751 -4.5392 13 6 -0.7537 3.7805 -4.9140 14 8 -2.1191 3.9203 -4.5160 15 6 -0.6028 4.0330 -6.3921 16 1 -0.1650 3.2770 -7.0270 17 6 -1.0228 5.2294 -6.9335 18 7 -1.5555 6.1501 -6.1602 19 14 -0.8351 5.5425 -8.7656 20 1 -0.2122 4.3579 -9.4089 21 1 -2.1715 5.7857 -9.3657 22 1 0.0271 6.7328 -8.9784 23 6 0.1479 4.7290 -4.0960 24 7 1.6296 2.2510 -0.9368 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2373 1.1449 1.7525 31 1 4.0570 3.4891 1.7430 32 1 3.2588 5.0237 -0.0430 33 1 0.9333 1.8554 -2.7567 34 1 -0.7082 2.4800 -2.4149 35 1 0.6607 2.1201 -5.1379 36 1 -0.9907 1.6176 -4.6428 37 1 -2.5042 4.7818 -4.7274 38 1 -1.8507 6.9920 -6.5411 39 1 -0.4410 5.5595 -3.7067 40 1 0.9537 5.1063 -4.7256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592856319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = -47.217816 kcal Electronic energy + Delta-G solvation = -23518.863371 eV Core-core repulsion = 20105.545459 eV Total energy + Delta-G solvation = -3413.317911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62558 -38.88633 -37.14852 -34.36627 -34.20622 -32.55367 -32.13348 -30.11488 -29.82384 -27.75449 -25.71546 -24.70843 -23.87496 -22.25609 -21.44213 -19.65135 -19.29576 -17.23586 -16.96702 -16.47651 -15.90949 -15.43140 -15.15764 -14.91931 -14.52444 -14.40740 -14.04898 -13.72957 -13.26961 -12.97455 -12.90933 -12.79705 -12.37252 -12.16613 -11.90261 -11.67194 -11.49527 -11.36787 -11.18209 -11.04354 -10.72477 -10.52872 -10.45601 -10.16922 -9.96337 -9.83555 -9.31269 -9.04598 -9.02024 -8.62185 -8.27542 -7.80737 -6.27057 -4.35414 0.71904 1.16228 3.05470 3.21353 3.30218 3.33927 3.52531 3.98616 4.10131 4.28931 4.49150 4.78640 4.88672 5.01130 5.02025 5.13654 5.24875 5.29618 5.39165 5.63328 5.69881 5.79567 5.85920 5.91608 5.98966 6.04725 6.06678 6.20321 6.25840 6.42599 6.59205 6.65752 6.84796 6.92734 7.04869 7.29849 7.40585 7.76141 7.79855 8.03667 8.22969 8.65593 8.71160 9.33858 9.47660 10.80748 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.004433 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.129969 B = 6314.333966 C = 7010.363388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C 0.123 3.877 4 C -0.158 4.158 5 C -0.080 4.080 6 C -0.123 4.123 7 C 0.100 3.900 8 C 0.566 3.434 9 O -0.549 6.549 10 N -0.585 5.585 11 C 0.107 3.893 12 C -0.123 4.123 13 C 0.248 3.752 14 O -0.586 6.586 15 C -0.536 4.536 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.099 3.901 24 N -0.447 5.447 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.385 0.615 38 H 0.270 0.730 39 H 0.066 0.934 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 -10.473 13.555 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.017 4.017 4 C -0.178 4.178 5 C -0.106 4.106 6 C -0.144 4.144 7 C -0.038 4.038 8 C 0.352 3.648 9 O -0.428 6.428 10 N -0.315 5.315 11 C -0.015 4.015 12 C -0.161 4.161 13 C 0.208 3.792 14 O -0.396 6.396 15 C -0.574 4.574 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.022 4.022 24 N -0.159 5.159 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.237 0.763 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.613 -10.518 13.102 18.056 hybrid contribution 0.641 1.288 -0.421 1.499 sum 7.254 -9.230 12.681 17.280 Atomic orbital electron populations 1.21715 0.93839 1.01818 1.03102 1.20485 0.97288 0.90021 1.03064 1.21440 0.93402 0.96385 0.90427 1.22141 0.98776 0.96927 0.99988 1.21571 0.98163 0.93239 0.97629 1.22109 0.96612 1.01820 0.93873 1.21355 0.95776 0.90915 0.95791 1.17527 0.79842 0.86210 0.81183 1.90751 1.59151 1.17573 1.75288 1.48633 1.42023 1.14036 1.26810 1.22621 0.98648 0.83064 0.97211 1.22835 1.00397 0.98835 0.94042 1.19497 0.79547 0.88650 0.91532 1.86083 1.27174 1.41659 1.84658 1.21591 1.41579 1.01626 0.92590 0.91426 1.25080 0.93829 0.95466 0.98920 1.69588 1.41173 1.07209 1.35648 0.86345 0.77946 0.78326 0.84273 1.19571 1.20731 1.20770 1.23131 0.97748 0.95612 0.85751 1.67733 1.22608 1.02776 1.22774 0.92293 0.93016 0.91001 0.89808 0.90493 0.84674 0.84319 0.83570 0.88998 0.92064 0.90823 0.90637 0.76308 0.91983 0.91607 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.77 37.16 0.36 -1.06 16 2 C -0.07 -0.64 6.33 -27.88 -0.18 -0.81 16 3 C 0.12 1.47 6.18 -82.60 -0.51 0.95 16 4 C -0.16 -1.56 9.72 -39.32 -0.38 -1.94 16 5 C -0.08 -0.83 10.17 -39.31 -0.40 -1.23 16 6 C -0.12 -1.72 9.63 -39.06 -0.38 -2.10 16 7 C 0.10 1.71 6.72 -83.01 -0.56 1.15 16 8 C 0.57 12.02 7.84 -12.18 -0.10 11.93 16 9 O -0.55 -13.07 16.65 5.36 0.09 -12.98 16 10 N -0.59 -12.83 3.33 -171.51 -0.57 -13.40 16 11 C 0.11 2.07 5.93 -2.53 -0.02 2.05 16 12 C -0.12 -2.57 6.23 -24.58 -0.15 -2.72 16 13 C 0.25 6.16 0.86 -89.93 -0.08 6.09 16 14 O -0.59 -15.17 13.07 -35.23 -0.46 -15.63 16 15 C -0.54 -14.21 8.12 -34.44 -0.28 -14.49 16 16 H 0.07 1.77 7.76 -52.49 -0.41 1.36 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 18 N -0.90 -24.15 10.97 55.43 0.61 -23.54 16 19 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.10 2.47 5.54 -3.06 -0.02 2.46 16 24 N -0.45 -6.82 6.11 -6.06 -0.04 -6.85 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.07 0.85 7.94 -51.93 -0.41 0.43 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 30 H 0.14 0.88 7.95 -52.49 -0.42 0.46 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.15 2.00 7.64 -52.49 -0.40 1.60 16 33 H 0.09 1.60 5.88 -51.93 -0.31 1.29 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.39 10.24 6.98 45.56 0.32 10.56 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.07 1.78 8.07 -51.93 -0.42 1.36 16 40 H 0.07 1.81 7.82 -51.93 -0.41 1.40 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -30.37 332.32 -8.10 -38.47 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -4.95 Total: 11.30 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.77 Total: 2.02 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.00 Total: -43.79 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.37 Total: -28.60 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.37 -8.10 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592856319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.749 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds