Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47404 * 2 1 4 4 C 1.38603 * 119.54936 * 124.99840 * 3 2 1 5 5 C 1.38587 * 119.34759 * 180.02562 * 4 3 2 6 6 C 1.38630 * 118.48820 * 0.28013 * 5 4 3 7 7 C 1.39264 * 119.06364 * 359.45280 * 6 5 4 8 8 C 1.48165 * 119.72722 * 180.25557 * 7 6 5 9 9 O 1.21512 * 119.99779 * 0.29946 * 8 7 6 10 10 N 1.34780 * 120.00496 * 180.30043 * 8 7 6 11 11 C 1.47428 * 125.64435 * 0.02663 * 10 8 7 12 12 C 1.54904 * 104.83053 * 204.09225 * 11 10 8 13 13 C 1.55157 * 101.58078 * 322.99042 * 12 11 10 14 14 O 1.42909 * 110.72050 * 277.13879 * 13 12 11 15 15 C 1.50702 * 110.72481 * 154.04647 * 13 12 11 16 16 H 1.07997 * 119.99502 * 359.97438 * 15 13 12 17 17 C 1.37873 * 120.00150 * 180.02562 * 15 13 12 18 18 N 1.31507 * 120.00145 * 359.97438 * 17 15 13 19 19 Si 1.86811 * 119.99744 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46983 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47077 * 119.99943 * 19 17 15 22 22 H 1.48502 * 109.46721 * 239.99788 * 19 17 15 23 23 C 1.47017 * 125.65163 * 179.71505 * 10 8 7 24 24 N 1.31492 * 119.54686 * 305.02368 * 3 2 1 25 25 H 1.08997 * 109.47559 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47059 * 300.00284 * 1 2 3 27 27 H 1.08998 * 109.47292 * 59.99961 * 1 2 3 28 28 H 1.08994 * 109.47241 * 239.99649 * 2 1 3 29 29 H 1.08999 * 109.46846 * 119.99748 * 2 1 3 30 30 H 1.08000 * 120.32317 * 0.04559 * 4 3 2 31 31 H 1.08002 * 120.75096 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.46727 * 179.72671 * 6 5 4 33 33 H 1.09003 * 110.36659 * 322.92903 * 11 10 8 34 34 H 1.08996 * 110.36576 * 85.14099 * 11 10 8 35 35 H 1.09003 * 111.00909 * 81.05956 * 12 11 10 36 36 H 1.08998 * 111.00633 * 204.91709 * 12 11 10 37 37 H 0.96699 * 114.00126 * 179.97438 * 14 13 12 38 38 H 0.97006 * 119.99853 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.88210 * 298.39540 * 23 10 8 40 40 H 1.08999 * 109.87802 * 59.55913 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9123 1.8347 0.9877 5 6 3.3713 3.1424 0.9840 6 6 2.9252 3.9969 -0.0123 7 6 2.0452 3.5112 -0.9762 8 6 1.5636 4.4102 -2.0510 9 8 1.9407 5.5646 -2.0919 10 7 0.7071 3.9477 -2.9832 11 6 0.1708 2.5761 -3.0522 12 6 -0.2138 2.3751 -4.5392 13 6 -0.7537 3.7805 -4.9140 14 8 -2.1191 3.9203 -4.5160 15 6 -0.6028 4.0330 -6.3921 16 1 -0.1650 3.2770 -7.0270 17 6 -1.0228 5.2294 -6.9335 18 7 -1.5555 6.1501 -6.1602 19 14 -0.8351 5.5425 -8.7656 20 1 -0.2122 4.3579 -9.4089 21 1 -2.1715 5.7857 -9.3657 22 1 0.0271 6.7328 -8.9784 23 6 0.1479 4.7290 -4.0960 24 7 1.6296 2.2510 -0.9368 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2373 1.1449 1.7525 31 1 4.0570 3.4891 1.7430 32 1 3.2588 5.0237 -0.0430 33 1 0.9333 1.8554 -2.7567 34 1 -0.7082 2.4800 -2.4149 35 1 0.6607 2.1201 -5.1379 36 1 -0.9907 1.6176 -4.6428 37 1 -2.5042 4.7818 -4.7274 38 1 -1.8507 6.9920 -6.5411 39 1 -0.4410 5.5595 -3.7067 40 1 0.9537 5.1063 -4.7256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592856319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = -67.966278 kcal Electronic energy + Delta-G solvation = -23519.763092 eV Core-core repulsion = 20105.545459 eV Total energy + Delta-G solvation = -3414.217632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82075 -40.42862 -38.95028 -36.19813 -35.09621 -34.20137 -33.60474 -31.73579 -30.91503 -29.60895 -27.47473 -25.84776 -25.08331 -23.81001 -22.32715 -21.44268 -20.85425 -19.19419 -18.52516 -17.58551 -17.26713 -16.82740 -16.78236 -16.55768 -16.12362 -15.55039 -15.21541 -14.92403 -14.78391 -14.72224 -14.38757 -14.18693 -13.79040 -13.49088 -13.38846 -13.17972 -12.91183 -12.82006 -12.53693 -12.36572 -12.30521 -12.26096 -12.06715 -11.86738 -11.43084 -11.20541 -10.88876 -10.70171 -10.33412 -10.22407 -10.04953 -9.57517 -8.29409 -6.45984 -0.36060 0.25780 1.39289 1.41898 1.53543 1.67221 1.95608 2.36372 2.81836 2.96316 2.99400 3.56059 3.80371 3.84435 4.02130 4.08153 4.11057 4.22041 4.33522 4.43132 4.48413 4.54148 4.58483 4.63960 4.85635 4.93296 4.96910 5.06344 5.11825 5.12689 5.15559 5.25884 5.31493 5.35054 5.46460 5.51751 5.69620 5.72241 6.01093 6.51992 6.61865 6.75281 7.06620 7.26242 7.35597 8.77402 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.004433 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.129969 B = 6314.333966 C = 7010.363388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.112 3.888 4 C -0.133 4.133 5 C -0.070 4.070 6 C -0.129 4.129 7 C 0.064 3.936 8 C 0.559 3.441 9 O -0.589 6.589 10 N -0.595 5.595 11 C 0.123 3.877 12 C -0.117 4.117 13 C 0.235 3.765 14 O -0.589 6.589 15 C -0.558 4.558 16 H 0.069 0.931 17 C 0.025 3.975 18 N -0.919 5.919 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.283 1.283 23 C 0.116 3.884 24 N -0.468 5.468 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.138 0.862 33 H 0.116 0.884 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.378 0.622 38 H 0.272 0.728 39 H 0.031 0.969 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.481 -13.315 15.491 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.029 4.029 4 C -0.153 4.153 5 C -0.095 4.095 6 C -0.150 4.150 7 C -0.072 4.072 8 C 0.348 3.652 9 O -0.471 6.471 10 N -0.325 5.325 11 C 0.001 3.999 12 C -0.155 4.155 13 C 0.195 3.805 14 O -0.399 6.399 15 C -0.596 4.596 16 H 0.087 0.913 17 C -0.176 4.176 18 N -0.559 5.559 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.209 1.209 23 C -0.008 4.008 24 N -0.181 5.181 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.201 0.799 31 H 0.198 0.802 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.137 -13.388 15.051 21.725 hybrid contribution 0.210 2.116 -0.874 2.299 sum 8.346 -11.273 14.177 19.943 Atomic orbital electron populations 1.21701 0.94715 1.02551 1.01528 1.20622 0.96431 0.88367 1.05089 1.22089 0.93628 0.97076 0.90093 1.22700 0.96065 0.97160 0.99342 1.22027 0.97777 0.92877 0.96825 1.22200 0.96221 1.02295 0.94329 1.20716 0.98851 0.91589 0.96092 1.18376 0.78696 0.86544 0.81568 1.90696 1.60368 1.19595 1.76428 1.48708 1.42670 1.14610 1.26513 1.22615 0.99110 0.82159 0.96014 1.22844 1.00828 0.96733 0.95061 1.19701 0.78884 0.90883 0.91051 1.86070 1.27914 1.41128 1.84751 1.21889 1.42050 1.02068 0.93573 0.91304 1.25859 0.93437 0.95194 1.03071 1.69693 1.41498 1.07462 1.37241 0.85359 0.77981 0.78126 0.79294 1.18805 1.20080 1.20860 1.22665 0.96406 0.95237 0.86445 1.67504 1.23452 1.02350 1.24771 0.90413 0.93356 0.93838 0.89441 0.86728 0.79854 0.80158 0.84377 0.86595 0.92363 0.90077 0.89234 0.77123 0.91872 0.95013 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.77 71.98 0.70 -1.77 16 2 C -0.07 -0.93 6.33 29.85 0.19 -0.75 16 3 C 0.11 2.28 6.18 42.70 0.26 2.54 16 4 C -0.13 -1.91 9.72 22.44 0.22 -1.69 16 5 C -0.07 -1.16 10.17 22.45 0.23 -0.93 16 6 C -0.13 -3.48 9.63 22.61 0.22 -3.26 16 7 C 0.06 2.19 6.72 41.89 0.28 2.47 16 8 C 0.56 25.01 7.84 86.88 0.68 25.69 16 9 O -0.59 -29.99 16.65 -3.75 -0.06 -30.05 16 10 N -0.60 -27.43 3.33 -814.83 -2.71 -30.14 16 11 C 0.12 4.80 5.93 86.85 0.51 5.32 16 12 C -0.12 -4.91 6.23 31.98 0.20 -4.71 16 13 C 0.24 12.11 0.86 -10.35 -0.01 12.10 16 14 O -0.59 -31.70 13.07 -148.98 -1.95 -33.65 16 15 C -0.56 -30.37 8.12 25.60 0.21 -30.16 16 16 H 0.07 3.64 7.76 -2.91 -0.02 3.62 16 17 C 0.02 1.34 5.28 84.65 0.45 1.78 16 18 N -0.92 -51.41 10.97 21.44 0.24 -51.17 16 19 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 C 0.12 6.16 5.54 86.73 0.48 6.64 16 24 N -0.47 -13.75 6.11 -173.08 -1.06 -14.81 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.04 0.97 7.94 -2.39 -0.02 0.95 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 0.76 7.87 -2.39 -0.02 0.75 16 30 H 0.18 0.94 7.95 -2.91 -0.02 0.92 16 31 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.14 3.84 7.64 -2.91 -0.02 3.82 16 33 H 0.12 4.00 5.88 -2.39 -0.01 3.98 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 3.26 8.03 -2.39 -0.02 3.24 16 36 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.38 21.16 6.98 -74.06 -0.52 20.64 16 38 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 39 H 0.03 1.85 8.07 -2.38 -0.02 1.83 16 40 H 0.04 2.17 7.82 -2.39 -0.02 2.15 16 Total: -1.00 -71.09 332.32 1.64 -69.44 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.54 Total: 32.15 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 4.62 Total: 13.27 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -3.53 Total: -96.12 kcal Atomic # 8 Polarization: -61.69 SS G_CDS: -2.01 Total: -63.70 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.09 1.64 -69.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592856319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.475 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds