Wall clock time and date at job start Tue Mar 31 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47201 * 2 1 4 4 C 1.38119 * 120.03973 * 261.61380 * 3 2 1 5 5 C 1.38263 * 120.07594 * 180.27122 * 4 3 2 6 6 C 1.38301 * 120.15201 * 359.72711 * 5 4 3 7 7 N 1.48002 * 119.96450 * 179.97438 * 6 5 4 8 8 O 1.21809 * 119.99903 * 180.02562 * 7 6 5 9 9 O 1.21798 * 120.00291 * 0.02562 * 7 6 5 10 10 C 1.38089 * 120.07378 * 359.97438 * 6 5 4 11 11 C 1.38899 * 120.03591 * 81.33649 * 3 2 1 12 12 N 1.39669 * 120.07745 * 359.97438 * 11 3 2 13 13 C 1.46496 * 119.99875 * 174.24115 * 12 11 3 14 14 C 1.53001 * 109.46863 * 184.70292 * 13 12 11 15 15 C 1.50702 * 115.54959 * 84.31006 * 14 13 12 16 16 H 1.08000 * 120.00017 * 219.66806 * 15 14 13 17 17 C 1.37879 * 120.00088 * 39.66744 * 15 14 13 18 18 N 1.31513 * 119.99668 * 18.21857 * 17 15 14 19 19 Si 1.86797 * 119.99897 * 198.22047 * 17 15 14 20 20 H 1.48500 * 109.47449 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46956 * 119.99861 * 19 17 15 22 22 H 1.48502 * 109.47129 * 239.99601 * 19 17 15 23 23 C 1.52997 * 117.50336 * 298.63883 * 14 13 12 24 24 C 1.53003 * 60.03317 * 252.49953 * 23 14 13 25 25 H 1.08997 * 109.46990 * 299.99988 * 1 2 3 26 26 H 1.08996 * 109.47058 * 60.00230 * 1 2 3 27 27 H 1.08998 * 109.46864 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47406 * 239.99723 * 2 1 3 29 29 H 1.09003 * 109.46744 * 119.99575 * 2 1 3 30 30 H 1.08004 * 119.95996 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.92232 * 179.69964 * 5 4 3 32 32 H 1.07992 * 120.03705 * 180.02562 * 10 6 5 33 33 H 0.96999 * 119.99539 * 354.24847 * 12 11 3 34 34 H 1.08996 * 109.47186 * 64.70611 * 13 12 11 35 35 H 1.08993 * 109.47528 * 304.70353 * 13 12 11 36 36 H 0.97009 * 119.99601 * 184.96897 * 18 17 15 37 37 H 1.09004 * 117.49814 * 0.02562 * 23 14 13 38 38 H 1.08997 * 117.50203 * 144.99537 * 23 14 13 39 39 H 1.08995 * 117.50170 * 107.50290 * 24 23 14 40 40 H 1.09004 * 117.49453 * 252.52462 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4273 2.0146 -1.1829 5 6 2.8936 3.3162 -1.1829 6 6 2.9610 4.0300 -0.0003 7 7 3.4613 5.4229 -0.0050 8 8 3.5214 6.0520 1.0363 9 8 3.8130 5.9401 -1.0501 10 6 2.5620 3.4446 1.1850 11 6 2.0934 2.1367 1.1887 12 7 1.6889 1.5415 2.3858 13 6 1.8712 2.2507 3.6546 14 6 1.4577 1.3396 4.8121 15 6 2.5171 0.3839 5.2974 16 1 2.2485 -0.6250 5.5737 17 6 3.8292 0.7976 5.3887 18 7 4.1141 2.0814 5.4061 19 14 5.2019 -0.4653 5.4876 20 1 4.6214 -1.8316 5.4489 21 1 6.1228 -0.2866 4.3363 22 1 5.9531 -0.2817 6.7554 23 6 0.0045 0.8625 4.8514 24 6 0.4917 1.9121 5.8524 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.3763 1.4598 -2.1082 31 1 3.2063 3.7764 -2.1086 32 1 2.6145 4.0026 2.1081 33 1 1.2874 0.6586 2.3769 34 1 1.2537 3.1489 3.6608 35 1 2.9188 2.5293 3.7679 36 1 5.0393 2.3730 5.3975 37 1 -0.6569 1.1975 4.0523 38 1 -0.1853 -0.1425 5.2281 39 1 0.1506 2.9378 5.7122 40 1 0.6228 1.5974 6.8878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594704179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:05 Heat of formation + Delta-G solvation = 36.368005 kcal Electronic energy + Delta-G solvation = -23300.215997 eV Core-core repulsion = 19890.522639 eV Total energy + Delta-G solvation = -3409.693358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86118 -39.78313 -37.24291 -36.25824 -34.79253 -33.93747 -32.38654 -30.36656 -29.29482 -26.41959 -26.02422 -25.22303 -23.27049 -21.95441 -21.38135 -20.93250 -19.43440 -18.93509 -18.32850 -17.21977 -16.82216 -15.92791 -15.69600 -15.23731 -14.84752 -14.28361 -14.02241 -13.87576 -13.71301 -13.47393 -13.23422 -12.68037 -12.31197 -11.95497 -11.79702 -11.67781 -11.30324 -11.23034 -11.11089 -11.00950 -10.96386 -10.85826 -10.78444 -10.64820 -10.45580 -10.00060 -9.61005 -9.28313 -9.13860 -8.95079 -8.27847 -7.16465 -6.30918 -4.29926 0.15187 1.41563 1.72572 1.74759 3.14361 3.25901 3.27525 3.61880 3.78691 4.22969 4.60894 4.72064 4.77480 4.92952 5.04872 5.23810 5.27539 5.32367 5.35429 5.55696 5.64930 5.78272 5.83306 5.88137 6.00457 6.09790 6.12795 6.17414 6.27202 6.36436 6.39555 6.44558 6.48730 6.65067 6.80505 6.85786 7.14063 7.32827 7.67569 7.69943 7.96006 8.10100 8.17000 8.66497 9.30401 10.74049 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.005691 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.255738 B = 4918.759160 C = 5589.948522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.070 4.070 5 C -0.136 4.136 6 C 0.004 3.996 7 N 0.031 4.969 8 O -0.162 6.162 9 O -0.175 6.175 10 C -0.141 4.141 11 C 0.240 3.760 12 N -0.709 5.709 13 C 0.140 3.860 14 C 0.040 3.960 15 C -0.494 4.494 16 H 0.063 0.937 17 C 0.074 3.926 18 N -0.866 5.866 19 Si 0.884 3.116 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.283 1.283 23 C -0.209 4.209 24 C -0.189 4.189 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.403 0.597 34 H 0.032 0.968 35 H 0.114 0.886 36 H 0.265 0.735 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 -2.456 -11.537 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.131 4.131 4 C -0.089 4.089 5 C -0.158 4.158 6 C -0.079 4.079 7 N 0.549 4.451 8 O -0.379 6.379 9 O -0.388 6.388 10 C -0.166 4.166 11 C 0.128 3.872 12 N -0.332 5.332 13 C 0.017 3.983 14 C 0.039 3.961 15 C -0.530 4.530 16 H 0.081 0.919 17 C -0.130 4.130 18 N -0.502 5.502 19 Si 0.711 3.289 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.209 1.209 23 C -0.247 4.247 24 C -0.228 4.228 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.170 0.830 33 H 0.240 0.760 34 H 0.051 0.949 35 H 0.131 0.869 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.339 -2.897 -11.195 12.737 hybrid contribution 0.761 -0.444 0.184 0.900 sum -4.578 -3.341 -11.011 12.384 Atomic orbital electron populations 1.21777 0.94589 1.01932 1.02381 1.20470 0.96201 0.91931 1.03507 1.19775 1.04157 0.97126 0.92014 1.20654 0.97439 0.93273 0.97532 1.20559 1.03674 0.95013 0.96531 1.20713 1.08228 0.82071 0.96927 1.43721 0.97948 1.03328 1.00104 1.94556 1.58484 1.63173 1.21647 1.94471 1.51095 1.71847 1.21397 1.20426 1.03450 0.94920 0.97785 1.17451 0.92213 0.90276 0.87211 1.45257 1.63903 1.20664 1.03343 1.21423 1.04468 0.92401 0.79959 1.19079 0.87287 0.96348 0.93361 1.20512 0.91145 0.96905 1.44451 0.91887 1.24918 0.98811 0.95117 0.94143 1.69977 1.19459 1.13810 1.46973 0.86673 0.82218 0.82131 0.77922 1.19573 1.20706 1.20863 1.22876 1.00420 0.98665 1.02722 1.22968 1.07738 0.95676 0.96372 0.92316 0.92528 0.92115 0.90555 0.90356 0.84443 0.84085 0.82971 0.76018 0.94936 0.86896 0.92501 0.91344 0.90393 0.91460 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.79 37.16 0.36 -1.12 16 2 C -0.08 -0.92 5.42 -27.88 -0.15 -1.07 16 3 C -0.12 -1.66 5.15 -104.42 -0.54 -2.20 16 4 C -0.07 -0.82 9.67 -39.62 -0.38 -1.21 16 5 C -0.14 -1.84 9.55 -39.55 -0.38 -2.22 16 6 C 0.00 0.07 6.85 -79.99 -0.55 -0.48 16 7 N 0.03 0.56 4.45 33.94 0.15 0.71 16 8 O -0.16 -3.12 18.44 -29.46 -0.54 -3.67 16 9 O -0.17 -3.06 18.44 -29.46 -0.54 -3.60 16 10 C -0.14 -2.45 8.81 -39.38 -0.35 -2.80 16 11 C 0.24 3.89 6.63 -83.79 -0.56 3.34 16 12 N -0.71 -12.35 5.53 -58.64 -0.32 -12.67 16 13 C 0.14 2.89 4.65 -4.04 -0.02 2.88 16 14 C 0.04 0.88 1.75 -155.62 -0.27 0.61 16 15 C -0.49 -12.18 8.97 -34.44 -0.31 -12.49 16 16 H 0.06 1.57 7.88 -52.49 -0.41 1.16 16 17 C 0.07 1.87 5.06 -17.82 -0.09 1.78 16 18 N -0.87 -22.65 11.21 55.43 0.62 -22.03 16 19 Si 0.88 19.80 29.58 -169.99 -5.03 14.77 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 C -0.21 -3.99 9.65 -26.73 -0.26 -4.25 16 24 C -0.19 -3.94 9.89 -26.69 -0.26 -4.21 16 25 H 0.06 0.66 7.57 -51.93 -0.39 0.27 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.68 8.02 -51.93 -0.42 0.27 16 29 H 0.08 0.95 7.12 -51.93 -0.37 0.58 16 30 H 0.14 1.17 8.05 -52.48 -0.42 0.75 16 31 H 0.14 1.67 7.60 -52.48 -0.40 1.27 16 32 H 0.15 2.85 6.31 -52.49 -0.33 2.52 16 33 H 0.40 6.59 5.92 -40.82 -0.24 6.35 16 34 H 0.03 0.66 7.74 -51.93 -0.40 0.26 16 35 H 0.11 2.69 5.31 -51.93 -0.28 2.41 16 36 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 40 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 339.42 15.07 5.11 5.11 Total: -1.00 -26.30 339.42 -9.63 -35.93 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.33 Total: 8.88 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -3.75 Total: -23.44 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.45 Total: -33.99 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -1.09 Total: -7.27 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.30 -9.63 -35.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.297 kcal (2) G-P(sol) polarization free energy of solvation -26.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds