Wall clock time and date at job start Tue Mar 31 2020 05:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47201 * 2 1 4 4 C 1.38119 * 120.03973 * 261.61380 * 3 2 1 5 5 C 1.38263 * 120.07594 * 180.27122 * 4 3 2 6 6 C 1.38301 * 120.15201 * 359.72711 * 5 4 3 7 7 N 1.48002 * 119.96450 * 179.97438 * 6 5 4 8 8 O 1.21809 * 119.99903 * 180.02562 * 7 6 5 9 9 O 1.21798 * 120.00291 * 0.02562 * 7 6 5 10 10 C 1.38089 * 120.07378 * 359.97438 * 6 5 4 11 11 C 1.38899 * 120.03591 * 81.33649 * 3 2 1 12 12 N 1.39669 * 120.07745 * 359.97438 * 11 3 2 13 13 C 1.46496 * 119.99875 * 174.24115 * 12 11 3 14 14 C 1.53001 * 109.46863 * 184.70292 * 13 12 11 15 15 C 1.50702 * 115.54959 * 84.31006 * 14 13 12 16 16 H 1.08000 * 120.00017 * 219.66806 * 15 14 13 17 17 C 1.37879 * 120.00088 * 39.66744 * 15 14 13 18 18 N 1.31513 * 119.99668 * 18.21857 * 17 15 14 19 19 Si 1.86797 * 119.99897 * 198.22047 * 17 15 14 20 20 H 1.48500 * 109.47449 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46956 * 119.99861 * 19 17 15 22 22 H 1.48502 * 109.47129 * 239.99601 * 19 17 15 23 23 C 1.52997 * 117.50336 * 298.63883 * 14 13 12 24 24 C 1.53003 * 60.03317 * 252.49953 * 23 14 13 25 25 H 1.08997 * 109.46990 * 299.99988 * 1 2 3 26 26 H 1.08996 * 109.47058 * 60.00230 * 1 2 3 27 27 H 1.08998 * 109.46864 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47406 * 239.99723 * 2 1 3 29 29 H 1.09003 * 109.46744 * 119.99575 * 2 1 3 30 30 H 1.08004 * 119.95996 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.92232 * 179.69964 * 5 4 3 32 32 H 1.07992 * 120.03705 * 180.02562 * 10 6 5 33 33 H 0.96999 * 119.99539 * 354.24847 * 12 11 3 34 34 H 1.08996 * 109.47186 * 64.70611 * 13 12 11 35 35 H 1.08993 * 109.47528 * 304.70353 * 13 12 11 36 36 H 0.97009 * 119.99601 * 184.96897 * 18 17 15 37 37 H 1.09004 * 117.49814 * 0.02562 * 23 14 13 38 38 H 1.08997 * 117.50203 * 144.99537 * 23 14 13 39 39 H 1.08995 * 117.50170 * 107.50290 * 24 23 14 40 40 H 1.09004 * 117.49453 * 252.52462 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4273 2.0146 -1.1829 5 6 2.8936 3.3162 -1.1829 6 6 2.9610 4.0300 -0.0003 7 7 3.4613 5.4229 -0.0050 8 8 3.5214 6.0520 1.0363 9 8 3.8130 5.9401 -1.0501 10 6 2.5620 3.4446 1.1850 11 6 2.0934 2.1367 1.1887 12 7 1.6889 1.5415 2.3858 13 6 1.8712 2.2507 3.6546 14 6 1.4577 1.3396 4.8121 15 6 2.5171 0.3839 5.2974 16 1 2.2485 -0.6250 5.5737 17 6 3.8292 0.7976 5.3887 18 7 4.1141 2.0814 5.4061 19 14 5.2019 -0.4653 5.4876 20 1 4.6214 -1.8316 5.4489 21 1 6.1228 -0.2866 4.3363 22 1 5.9531 -0.2817 6.7554 23 6 0.0045 0.8625 4.8514 24 6 0.4917 1.9121 5.8524 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.3763 1.4598 -2.1082 31 1 3.2063 3.7764 -2.1086 32 1 2.6145 4.0026 2.1081 33 1 1.2874 0.6586 2.3769 34 1 1.2537 3.1489 3.6608 35 1 2.9188 2.5293 3.7679 36 1 5.0393 2.3730 5.3975 37 1 -0.6569 1.1975 4.0523 38 1 -0.1853 -0.1425 5.2281 39 1 0.1506 2.9378 5.7122 40 1 0.6228 1.5974 6.8878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594704179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:04 Heat of formation + Delta-G solvation = 24.817963 kcal Electronic energy + Delta-G solvation = -23300.716844 eV Core-core repulsion = 19890.522639 eV Total energy + Delta-G solvation = -3410.194205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.23421 -40.99083 -38.83522 -37.66535 -36.04012 -35.05666 -34.28666 -31.42923 -30.58741 -27.93975 -27.55896 -26.75305 -24.32957 -23.28161 -22.87457 -22.11244 -21.07417 -20.32526 -19.72285 -18.61105 -18.41401 -17.31267 -16.85121 -16.75851 -16.42376 -15.84954 -15.33411 -15.03334 -14.90040 -14.62332 -14.48069 -13.95556 -13.68078 -13.52408 -13.03157 -12.90152 -12.88887 -12.81459 -12.61588 -12.37065 -12.34508 -12.30928 -12.13424 -11.93700 -11.82878 -11.49503 -11.32165 -10.96705 -10.67187 -10.24240 -10.09566 -8.51403 -8.19676 -6.25034 -1.17368 0.27485 0.43578 0.46415 1.34088 1.40723 1.48944 2.36844 2.41658 2.48146 2.93993 3.53651 3.60423 3.67382 3.82919 3.95868 4.12809 4.21552 4.36981 4.45568 4.48556 4.52231 4.61554 4.66400 4.76158 4.87702 4.89168 4.95711 5.01558 5.03987 5.13545 5.17287 5.20955 5.36654 5.40459 5.49616 5.52047 5.61971 5.83189 6.25146 6.30078 6.54189 6.70782 6.87897 7.36516 8.81347 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.005691 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.255738 B = 4918.759160 C = 5589.948522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.107 4.107 4 C -0.056 4.056 5 C -0.116 4.116 6 C -0.017 4.017 7 N 0.032 4.968 8 O -0.227 6.227 9 O -0.143 6.143 10 C -0.167 4.167 11 C 0.220 3.780 12 N -0.711 5.711 13 C 0.159 3.841 14 C 0.013 3.987 15 C -0.501 4.501 16 H 0.058 0.942 17 C 0.033 3.967 18 N -0.894 5.894 19 Si 0.937 3.063 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.287 1.287 23 C -0.176 4.176 24 C -0.199 4.199 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.189 0.811 31 H 0.168 0.832 32 H 0.121 0.879 33 H 0.408 0.592 34 H 0.024 0.976 35 H 0.078 0.922 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 -4.824 -14.819 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.075 4.075 5 C -0.138 4.138 6 C -0.101 4.101 7 N 0.546 4.454 8 O -0.428 6.428 9 O -0.368 6.368 10 C -0.192 4.192 11 C 0.111 3.889 12 N -0.337 5.337 13 C 0.035 3.965 14 C 0.012 3.988 15 C -0.538 4.538 16 H 0.076 0.924 17 C -0.168 4.168 18 N -0.531 5.531 19 Si 0.763 3.237 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.213 1.213 23 C -0.213 4.213 24 C -0.238 4.238 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.207 0.793 31 H 0.185 0.815 32 H 0.139 0.861 33 H 0.246 0.754 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.228 -5.249 -14.367 16.516 hybrid contribution 1.002 0.237 0.999 1.435 sum -5.227 -5.012 -13.368 15.203 Atomic orbital electron populations 1.21764 0.93568 1.02986 1.02081 1.20595 0.96946 0.90060 1.04517 1.20230 1.01782 0.98096 0.91152 1.21222 0.95117 0.92448 0.98733 1.21057 1.01380 0.95342 0.96009 1.20917 1.09924 0.81327 0.97916 1.43990 0.97609 1.04018 0.99763 1.94575 1.61687 1.64297 1.22227 1.94409 1.49210 1.72095 1.21064 1.20275 1.05780 0.95800 0.97315 1.17663 0.93178 0.90102 0.87938 1.44920 1.65304 1.20797 1.02669 1.20890 1.02001 0.92238 0.81361 1.19140 0.88290 0.97126 0.94263 1.20752 0.92037 0.97038 1.43937 0.92413 1.25520 1.00701 0.96264 0.94356 1.70103 1.19309 1.15216 1.48467 0.85840 0.79875 0.80691 0.77296 1.18608 1.21034 1.21316 1.22857 0.98279 0.98315 1.01855 1.22954 1.08064 0.96786 0.95963 0.94152 0.91320 0.90433 0.87252 0.91648 0.79340 0.81466 0.86094 0.75375 0.95741 0.90431 0.93003 0.89143 0.89673 0.90830 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.79 71.98 0.70 -1.65 16 2 C -0.08 -1.50 5.42 29.85 0.16 -1.34 16 3 C -0.11 -2.51 5.15 -19.73 -0.10 -2.62 16 4 C -0.06 -1.05 9.67 22.25 0.22 -0.84 16 5 C -0.12 -2.75 9.55 22.29 0.21 -2.54 16 6 C -0.02 -0.57 6.85 36.36 0.25 -0.32 16 7 N 0.03 1.18 4.45 -46.52 -0.21 0.98 16 8 O -0.23 -9.42 18.44 18.87 0.35 -9.08 16 9 O -0.14 -4.86 18.44 18.89 0.35 -4.51 16 10 C -0.17 -6.03 8.81 22.40 0.20 -5.84 16 11 C 0.22 7.09 6.63 38.22 0.25 7.34 16 12 N -0.71 -25.03 5.53 -339.43 -1.88 -26.90 16 13 C 0.16 6.88 4.65 86.38 0.40 7.29 16 14 C 0.01 0.56 1.75 -52.90 -0.09 0.47 16 15 C -0.50 -25.08 8.97 25.60 0.23 -24.85 16 16 H 0.06 2.88 7.88 -2.91 -0.02 2.86 16 17 C 0.03 1.68 5.06 84.66 0.43 2.11 16 18 N -0.89 -48.82 11.21 21.45 0.24 -48.58 16 19 Si 0.94 41.27 29.58 68.60 2.03 43.30 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 C -0.18 -6.52 9.65 30.59 0.30 -6.22 16 24 C -0.20 -8.41 9.89 30.62 0.30 -8.11 16 25 H 0.04 0.80 7.57 -2.39 -0.02 0.78 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.29 8.02 -2.39 -0.02 1.28 16 29 H 0.06 1.39 7.12 -2.39 -0.02 1.38 16 30 H 0.19 1.74 8.05 -2.91 -0.02 1.72 16 31 H 0.17 3.13 7.60 -2.91 -0.02 3.11 16 32 H 0.12 5.06 6.31 -2.91 -0.02 5.05 16 33 H 0.41 13.12 5.92 -92.71 -0.55 12.57 16 34 H 0.02 1.06 7.74 -2.39 -0.02 1.04 16 35 H 0.08 3.95 5.31 -2.39 -0.01 3.94 16 36 H 0.26 13.86 8.32 -92.70 -0.77 13.08 16 37 H 0.09 2.95 8.14 -2.38 -0.02 2.94 16 38 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.07 2.96 8.06 -2.39 -0.02 2.94 16 40 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -60.25 339.42 4.85 -55.39 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.51 Total: 26.49 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 3.46 Total: -37.09 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.84 Total: -74.51 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.70 Total: -13.58 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -60.25 4.85 -55.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.213 kcal (2) G-P(sol) polarization free energy of solvation -60.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds