Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47810 * 2 1 4 4 C 1.38351 * 120.26714 * 90.00076 * 3 2 1 5 5 N 1.31881 * 121.18387 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.80289 * 0.02562 * 5 4 3 7 7 O 1.35428 * 119.80204 * 180.02562 * 6 5 4 8 8 C 1.40284 * 120.39658 * 0.02562 * 6 5 4 9 9 C 1.47523 * 120.59506 * 179.97438 * 8 6 5 10 10 O 1.21594 * 120.00036 * 5.21420 * 9 8 6 11 11 N 1.34782 * 120.00052 * 185.22108 * 9 8 6 12 12 C 1.46500 * 119.99934 * 185.06730 * 11 9 8 13 13 C 1.53003 * 109.46758 * 184.99416 * 12 11 9 14 14 C 1.50697 * 115.55175 * 54.22284 * 13 12 11 15 15 H 1.07999 * 120.00089 * 215.59277 * 14 13 12 16 16 C 1.37878 * 119.99787 * 35.32131 * 14 13 12 17 17 N 1.31510 * 120.00165 * 355.78497 * 16 14 13 18 18 Si 1.86804 * 119.99851 * 175.79071 * 16 14 13 19 19 H 1.48502 * 109.46862 * 59.99489 * 18 16 14 20 20 H 1.48497 * 109.47199 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46882 * 299.99781 * 18 16 14 22 22 C 1.53007 * 117.49448 * 199.89432 * 13 12 11 23 23 C 1.52998 * 117.49424 * 268.55362 * 13 12 11 24 24 C 1.38336 * 120.27099 * 270.30733 * 3 2 1 25 25 H 1.08998 * 109.47551 * 59.99286 * 1 2 3 26 26 H 1.09000 * 109.47588 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46828 * 300.00210 * 1 2 3 28 28 H 1.09001 * 109.46828 * 239.99790 * 2 1 3 29 29 H 1.09007 * 109.47356 * 120.00927 * 2 1 3 30 30 H 1.07997 * 119.41100 * 359.97438 * 4 3 2 31 31 H 0.96700 * 113.99802 * 270.01884 * 7 6 5 32 32 H 0.96997 * 119.99840 * 5.06633 * 11 9 8 33 33 H 1.09001 * 109.46892 * 64.99262 * 12 11 9 34 34 H 1.08998 * 109.47065 * 304.99066 * 12 11 9 35 35 H 0.97001 * 120.00280 * 185.00070 * 17 16 14 36 36 H 1.09000 * 117.49854 * 214.99989 * 22 13 12 37 37 H 1.09002 * 117.49778 * 0.02562 * 22 13 12 38 38 H 1.09002 * 117.50312 * 359.97438 * 23 13 12 39 39 H 1.09004 * 117.49836 * 144.97798 * 23 13 12 40 40 H 1.08000 * 120.82988 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2650 2.0782 1.1949 5 7 2.7052 3.3212 1.2160 6 6 2.9435 3.9950 0.1035 7 8 3.3955 5.2698 0.1724 8 6 2.7310 3.3974 -1.1477 9 6 2.9949 4.1453 -2.3916 10 8 3.4894 5.2549 -2.3406 11 7 2.6878 3.5986 -3.5847 12 6 3.0505 4.2919 -4.8233 13 6 2.4828 3.5273 -6.0207 14 6 1.0010 3.2568 -5.9760 15 1 0.6084 2.3328 -6.3742 16 6 0.1470 4.1864 -5.4215 17 7 0.6321 5.2709 -4.8576 18 14 -1.6991 3.9054 -5.4713 19 1 -2.0275 2.6456 -4.7570 20 1 -2.3908 5.0423 -4.8123 21 1 -2.1465 3.8047 -6.8836 22 6 3.1117 3.7917 -7.3903 23 6 3.3752 2.4672 -6.6694 24 6 2.2589 2.0803 -1.1947 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 2.0828 1.5643 2.1272 31 1 2.6941 5.9352 0.1932 32 1 2.2266 2.7461 -3.6233 33 1 4.1362 4.3431 -4.9063 34 1 2.6392 5.3012 -4.8085 35 1 0.0378 5.8890 -4.4040 36 1 2.4536 3.7700 -8.2589 37 1 3.9301 4.5101 -7.4380 38 1 4.3669 2.3148 -6.2434 39 1 2.8905 1.5740 -7.0636 40 1 2.0805 1.5898 -2.1402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = -21.614718 kcal Electronic energy + Delta-G solvation = -23384.483873 eV Core-core repulsion = 19972.276196 eV Total energy + Delta-G solvation = -3412.207678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62025 -38.41619 -37.17550 -36.56253 -34.23672 -33.21837 -32.30657 -31.80375 -29.06939 -26.28201 -25.49458 -24.12962 -23.96468 -21.72858 -21.28086 -19.61245 -19.30457 -18.62302 -17.17133 -16.97962 -16.07328 -15.73365 -14.89860 -14.73846 -14.55180 -14.27639 -13.99118 -13.86736 -13.70842 -13.27653 -12.98086 -12.71260 -12.38654 -12.20367 -11.79124 -11.72113 -11.49228 -11.35007 -11.11638 -11.11132 -10.80710 -10.57471 -10.30205 -9.78361 -9.72639 -9.63160 -9.11031 -8.92290 -8.87306 -8.66755 -8.33906 -7.86057 -6.04221 -4.25313 0.79148 1.16803 3.16814 3.25457 3.26282 3.30312 3.69988 4.03726 4.14090 4.24162 4.57766 4.73602 4.79580 4.90917 4.92179 5.22410 5.28471 5.31343 5.42711 5.60953 5.69732 5.72795 5.82847 5.96894 5.97693 6.10082 6.22454 6.26238 6.47997 6.50284 6.56660 6.66919 6.85403 7.04832 7.21174 7.51762 7.59615 7.71245 7.92568 7.94438 8.25093 8.50968 8.76470 9.12858 9.38324 10.84216 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.005818 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.760297 B = 4811.672968 C = 5465.178301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.156 4.156 4 C 0.137 3.863 5 N -0.509 5.509 6 C 0.355 3.645 7 O -0.459 6.459 8 C -0.181 4.181 9 C 0.549 3.451 10 O -0.536 6.536 11 N -0.674 5.674 12 C 0.165 3.835 13 C 0.035 3.965 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.075 3.925 17 N -0.865 5.865 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.198 4.198 23 C -0.213 4.213 24 C -0.030 4.030 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.402 0.598 32 H 0.395 0.605 33 H 0.019 0.981 34 H 0.119 0.881 35 H 0.263 0.737 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 -8.874 9.276 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.158 4.158 4 C -0.021 4.021 5 N -0.227 5.227 6 C 0.175 3.825 7 O -0.266 6.266 8 C -0.188 4.188 9 C 0.333 3.667 10 O -0.415 6.415 11 N -0.321 5.321 12 C 0.042 3.958 13 C 0.034 3.966 14 C -0.536 4.536 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.500 5.500 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.237 4.237 23 C -0.250 4.250 24 C -0.056 4.056 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.176 0.824 31 H 0.261 0.739 32 H 0.229 0.771 33 H 0.037 0.963 34 H 0.137 0.863 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.986 -7.614 10.071 12.664 hybrid contribution -1.810 -0.716 -0.937 2.160 sum -0.824 -8.330 9.134 12.389 Atomic orbital electron populations 1.21792 0.94493 1.01930 1.02569 1.20443 0.96311 0.91347 1.03329 1.20820 1.02894 0.98322 0.93743 1.22494 0.93000 0.89056 0.97571 1.67266 1.13981 1.09771 1.31695 1.19178 0.89784 0.87129 0.86387 1.84706 1.34976 1.11635 1.95317 1.21471 1.05121 0.96466 0.95716 1.17637 0.80301 0.85854 0.82924 1.90752 1.45097 1.18757 1.86907 1.45524 1.57294 1.24129 1.05199 1.21111 0.93850 1.00105 0.80739 1.19243 0.93166 0.94940 0.89213 1.20452 0.88764 1.03525 1.40898 0.92152 1.25003 0.98730 0.94615 0.94653 1.69846 1.34752 1.11368 1.34049 0.86650 0.85172 0.77680 0.78490 1.20240 1.21222 1.20098 1.22942 1.03175 0.98129 0.99407 1.22966 1.00402 0.93238 1.08407 1.21732 0.92374 0.92542 0.98969 0.92123 0.92184 0.92578 0.90465 0.90659 0.82410 0.73852 0.77091 0.96264 0.86321 0.92589 0.90194 0.91411 0.91330 0.90609 0.83822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 37.15 0.37 -0.95 16 2 C -0.08 -0.67 6.08 -27.89 -0.17 -0.84 16 3 C -0.16 -1.86 5.14 -104.54 -0.54 -2.40 16 4 C 0.14 1.69 10.84 -17.49 -0.19 1.50 16 5 N -0.51 -7.94 10.37 -12.98 -0.13 -8.07 16 6 C 0.35 6.17 7.77 -16.61 -0.13 6.04 16 7 O -0.46 -8.09 11.67 -39.68 -0.46 -8.55 16 8 C -0.18 -3.20 5.90 -104.69 -0.62 -3.82 16 9 C 0.55 11.62 7.76 -12.47 -0.10 11.52 16 10 O -0.54 -13.01 15.19 -16.42 -0.25 -13.26 16 11 N -0.67 -14.19 4.97 -61.35 -0.30 -14.50 16 12 C 0.16 3.83 4.62 -4.04 -0.02 3.81 16 13 C 0.04 0.80 2.04 -155.66 -0.32 0.49 16 14 C -0.50 -12.27 8.43 -34.44 -0.29 -12.56 16 15 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 16 C 0.07 1.86 5.31 -17.82 -0.09 1.77 16 17 N -0.86 -22.53 10.11 55.43 0.56 -21.97 16 18 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.20 -4.23 9.96 -26.69 -0.27 -4.49 16 23 C -0.21 -4.29 9.92 -26.69 -0.26 -4.55 16 24 C -0.03 -0.43 9.29 -38.89 -0.36 -0.79 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.40 5.54 9.06 45.56 0.41 5.95 16 32 H 0.39 7.72 6.28 -40.82 -0.26 7.47 16 33 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.12 3.16 5.89 -51.93 -0.31 2.86 16 35 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.14 1.89 6.58 -52.49 -0.35 1.55 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -29.91 339.41 -8.17 -38.08 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -4.68 Total: 13.78 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.99 Total: -5.27 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.12 Total: -44.54 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.71 Total: -21.81 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.91 -8.17 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.465 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds