Wall clock time and date at job start Tue Mar 31 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47810 * 2 1 4 4 C 1.38351 * 120.26714 * 90.00076 * 3 2 1 5 5 N 1.31881 * 121.18387 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.80289 * 0.02562 * 5 4 3 7 7 O 1.35428 * 119.80204 * 180.02562 * 6 5 4 8 8 C 1.40284 * 120.39658 * 0.02562 * 6 5 4 9 9 C 1.47523 * 120.59506 * 179.97438 * 8 6 5 10 10 O 1.21594 * 120.00036 * 5.21420 * 9 8 6 11 11 N 1.34782 * 120.00052 * 185.22108 * 9 8 6 12 12 C 1.46500 * 119.99934 * 185.06730 * 11 9 8 13 13 C 1.53003 * 109.46758 * 184.99416 * 12 11 9 14 14 C 1.50697 * 115.55175 * 54.22284 * 13 12 11 15 15 H 1.07999 * 120.00089 * 215.59277 * 14 13 12 16 16 C 1.37878 * 119.99787 * 35.32131 * 14 13 12 17 17 N 1.31510 * 120.00165 * 355.78497 * 16 14 13 18 18 Si 1.86804 * 119.99851 * 175.79071 * 16 14 13 19 19 H 1.48502 * 109.46862 * 59.99489 * 18 16 14 20 20 H 1.48497 * 109.47199 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46882 * 299.99781 * 18 16 14 22 22 C 1.53007 * 117.49448 * 199.89432 * 13 12 11 23 23 C 1.52998 * 117.49424 * 268.55362 * 13 12 11 24 24 C 1.38336 * 120.27099 * 270.30733 * 3 2 1 25 25 H 1.08998 * 109.47551 * 59.99286 * 1 2 3 26 26 H 1.09000 * 109.47588 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46828 * 300.00210 * 1 2 3 28 28 H 1.09001 * 109.46828 * 239.99790 * 2 1 3 29 29 H 1.09007 * 109.47356 * 120.00927 * 2 1 3 30 30 H 1.07997 * 119.41100 * 359.97438 * 4 3 2 31 31 H 0.96700 * 113.99802 * 270.01884 * 7 6 5 32 32 H 0.96997 * 119.99840 * 5.06633 * 11 9 8 33 33 H 1.09001 * 109.46892 * 64.99262 * 12 11 9 34 34 H 1.08998 * 109.47065 * 304.99066 * 12 11 9 35 35 H 0.97001 * 120.00280 * 185.00070 * 17 16 14 36 36 H 1.09000 * 117.49854 * 214.99989 * 22 13 12 37 37 H 1.09002 * 117.49778 * 0.02562 * 22 13 12 38 38 H 1.09002 * 117.50312 * 359.97438 * 23 13 12 39 39 H 1.09004 * 117.49836 * 144.97798 * 23 13 12 40 40 H 1.08000 * 120.82988 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2650 2.0782 1.1949 5 7 2.7052 3.3212 1.2160 6 6 2.9435 3.9950 0.1035 7 8 3.3955 5.2698 0.1724 8 6 2.7310 3.3974 -1.1477 9 6 2.9949 4.1453 -2.3916 10 8 3.4894 5.2549 -2.3406 11 7 2.6878 3.5986 -3.5847 12 6 3.0505 4.2919 -4.8233 13 6 2.4828 3.5273 -6.0207 14 6 1.0010 3.2568 -5.9760 15 1 0.6084 2.3328 -6.3742 16 6 0.1470 4.1864 -5.4215 17 7 0.6321 5.2709 -4.8576 18 14 -1.6991 3.9054 -5.4713 19 1 -2.0275 2.6456 -4.7570 20 1 -2.3908 5.0423 -4.8123 21 1 -2.1465 3.8047 -6.8836 22 6 3.1117 3.7917 -7.3903 23 6 3.3752 2.4672 -6.6694 24 6 2.2589 2.0803 -1.1947 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 2.0828 1.5643 2.1272 31 1 2.6941 5.9352 0.1932 32 1 2.2266 2.7461 -3.6233 33 1 4.1362 4.3431 -4.9063 34 1 2.6392 5.3012 -4.8085 35 1 0.0378 5.8890 -4.4040 36 1 2.4536 3.7700 -8.2589 37 1 3.9301 4.5101 -7.4380 38 1 4.3669 2.3148 -6.2434 39 1 2.8905 1.5740 -7.0636 40 1 2.0805 1.5898 -2.1402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597610957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:51 Heat of formation + Delta-G solvation = -42.011732 kcal Electronic energy + Delta-G solvation = -23385.368354 eV Core-core repulsion = 19972.276196 eV Total energy + Delta-G solvation = -3413.092158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.85348 -40.01495 -38.53257 -38.16857 -35.19110 -34.86570 -34.15650 -33.12073 -30.05054 -27.99872 -27.32462 -25.38613 -24.93944 -23.02813 -22.74266 -21.21945 -20.98889 -19.89641 -18.74362 -18.19271 -17.64888 -17.05657 -16.73838 -16.32892 -15.83944 -15.68492 -15.33013 -15.12144 -14.71293 -14.65643 -14.48182 -13.96486 -13.67428 -13.59368 -13.35039 -13.08015 -12.88501 -12.78107 -12.60722 -12.32435 -12.30287 -12.03652 -11.81057 -11.53644 -11.06489 -10.93291 -10.87940 -10.68755 -10.38712 -10.14000 -9.84806 -9.57490 -7.93468 -6.20127 -0.41020 0.04106 1.41430 1.45823 1.51158 1.97328 2.34863 2.40895 2.58026 2.82602 3.06706 3.56705 3.64593 3.73160 3.77742 3.90092 4.20267 4.27799 4.33996 4.53003 4.54662 4.56211 4.74063 4.76125 4.80724 4.87605 4.95234 4.96440 5.13596 5.17435 5.30411 5.37156 5.40950 5.52118 5.53174 5.60338 5.85448 5.99001 6.36752 6.52305 6.75918 6.80425 6.94325 7.45127 7.49081 8.91628 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.005818 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.760297 B = 4811.672968 C = 5465.178301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.073 4.073 3 C -0.141 4.141 4 C 0.146 3.854 5 N -0.522 5.522 6 C 0.338 3.662 7 O -0.479 6.479 8 C -0.208 4.208 9 C 0.546 3.454 10 O -0.578 6.578 11 N -0.670 5.670 12 C 0.175 3.825 13 C 0.006 3.994 14 C -0.503 4.503 15 H 0.061 0.939 16 C 0.035 3.965 17 N -0.888 5.888 18 Si 0.946 3.054 19 H -0.264 1.264 20 H -0.296 1.296 21 H -0.276 1.276 22 C -0.201 4.201 23 C -0.185 4.185 24 C -0.031 4.031 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.203 0.797 31 H 0.412 0.588 32 H 0.401 0.599 33 H 0.016 0.984 34 H 0.082 0.918 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 -12.027 10.318 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.142 4.142 4 C -0.012 4.012 5 N -0.241 5.241 6 C 0.159 3.841 7 O -0.287 6.287 8 C -0.214 4.214 9 C 0.332 3.668 10 O -0.460 6.460 11 N -0.317 5.317 12 C 0.052 3.948 13 C 0.006 3.994 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.166 4.166 17 N -0.525 5.525 18 Si 0.772 3.228 19 H -0.188 1.188 20 H -0.222 1.222 21 H -0.202 1.202 22 C -0.239 4.239 23 C -0.222 4.222 24 C -0.057 4.057 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.219 0.781 31 H 0.272 0.728 32 H 0.237 0.763 33 H 0.034 0.966 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.267 -10.804 11.101 15.493 hybrid contribution -1.590 0.182 -1.225 2.016 sum -1.324 -10.622 9.876 14.564 Atomic orbital electron populations 1.21799 0.94308 1.02909 1.01789 1.20561 0.96223 0.89022 1.05265 1.21194 1.00888 0.99717 0.92450 1.23308 0.90473 0.87891 0.99526 1.67353 1.14753 1.11236 1.30712 1.19295 0.90721 0.87141 0.86914 1.84649 1.36163 1.12506 1.95424 1.21201 1.08334 0.97904 0.93986 1.18180 0.79151 0.85540 0.83924 1.90711 1.46981 1.20690 1.87628 1.45406 1.57341 1.24172 1.04738 1.20777 0.93288 0.98693 0.82080 1.19283 0.93112 0.97317 0.89724 1.20657 0.89737 1.03293 1.40370 0.92074 1.25592 1.01959 0.94463 0.94625 1.70052 1.35311 1.12109 1.35046 0.85805 0.81171 0.77611 0.78211 1.18845 1.22181 1.20174 1.22967 1.03180 0.99432 0.98362 1.22962 1.00360 0.92711 1.06131 1.21914 0.91777 0.91332 1.00645 0.94119 0.90378 0.92200 0.89698 0.87668 0.78086 0.72776 0.76279 0.96580 0.90015 0.93506 0.90394 0.90740 0.89754 0.89456 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.89 71.98 0.71 -1.37 16 2 C -0.07 -0.96 6.08 29.85 0.18 -0.78 16 3 C -0.14 -2.92 5.14 -19.81 -0.10 -3.03 16 4 C 0.15 3.13 10.84 84.71 0.92 4.05 16 5 N -0.52 -15.56 10.37 -308.00 -3.19 -18.76 16 6 C 0.34 11.89 7.77 85.13 0.66 12.55 16 7 O -0.48 -17.62 11.67 -66.48 -0.78 -18.39 16 8 C -0.21 -7.42 5.90 -19.91 -0.12 -7.54 16 9 C 0.55 23.97 7.76 86.69 0.67 24.64 16 10 O -0.58 -29.59 15.19 16.74 0.25 -29.33 16 11 N -0.67 -28.81 4.97 -466.27 -2.32 -31.13 16 12 C 0.18 8.37 4.62 86.38 0.40 8.77 16 13 C 0.01 0.29 2.04 -52.93 -0.11 0.18 16 14 C -0.50 -24.54 8.43 25.60 0.22 -24.33 16 15 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 16 C 0.04 1.77 5.31 84.66 0.45 2.22 16 17 N -0.89 -47.67 10.11 21.45 0.22 -47.46 16 18 Si 0.95 40.28 29.54 68.60 2.03 42.30 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 22 C -0.20 -8.42 9.96 30.62 0.30 -8.12 16 23 C -0.18 -7.08 9.92 30.62 0.30 -6.78 16 24 C -0.03 -0.84 9.29 22.72 0.21 -0.63 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.10 0.85 8.09 -2.38 -0.02 0.83 16 30 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.41 12.22 9.06 -74.06 -0.67 11.55 16 32 H 0.40 15.79 6.28 -92.71 -0.58 15.20 16 33 H 0.02 0.76 8.09 -2.39 -0.02 0.74 16 34 H 0.08 4.57 5.89 -2.39 -0.01 4.56 16 35 H 0.26 13.66 8.32 -92.71 -0.77 12.88 16 36 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.15 3.81 6.58 -2.91 -0.02 3.79 16 Total: -1.00 -66.24 339.41 0.74 -65.50 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.18 Total: 37.43 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 4.70 Total: -0.16 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -5.29 Total: -97.35 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.52 Total: -47.72 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Total: -66.24 0.74 -65.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.488 kcal (2) G-P(sol) polarization free energy of solvation -66.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds