Wall clock time and date at job start Tue Mar 31 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46729 * 2 1 4 4 C 1.50700 * 109.46782 * 119.99724 * 2 1 3 5 5 C 1.38376 * 119.93185 * 299.97632 * 4 2 1 6 6 C 1.38339 * 120.29642 * 180.02562 * 5 4 2 7 7 C 1.37973 * 120.14281 * 359.97438 * 6 5 4 8 8 C 1.39559 * 119.85322 * 0.04350 * 7 6 5 9 9 C 1.47847 * 120.14245 * 180.02562 * 8 7 6 10 10 O 1.21559 * 119.99906 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00120 * 359.94975 * 9 8 7 12 12 C 1.46497 * 119.99671 * 180.02562 * 11 9 8 13 13 C 1.50708 * 109.47014 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99697 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00120 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99947 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00001 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00034 * 180.02562 * 16 15 13 19 19 N 1.31406 * 119.99663 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99906 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47325 * 60.00140 * 20 18 16 22 22 H 1.48497 * 109.46986 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47147 * 300.00003 * 20 18 16 24 24 C 1.37935 * 119.92555 * 120.00434 * 4 2 1 25 25 H 1.08999 * 109.47445 * 299.99896 * 1 2 3 26 26 H 1.09004 * 109.47100 * 60.00418 * 1 2 3 27 27 H 1.09004 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46990 * 239.99824 * 2 1 3 29 29 H 1.09004 * 109.46659 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46988 * 299.99650 * 3 2 1 31 31 H 1.08999 * 109.47073 * 59.99875 * 3 2 1 32 32 H 1.08005 * 119.84839 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.92638 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.07335 * 179.97438 * 7 6 5 35 35 H 0.97000 * 120.00121 * 0.02562 * 11 9 8 36 36 H 1.09004 * 109.47650 * 299.99974 * 12 11 9 37 37 H 1.09002 * 109.47529 * 60.00474 * 12 11 9 38 38 H 0.97002 * 119.99859 * 0.02562 * 15 13 12 39 39 H 0.97006 * 120.00012 * 180.02562 * 19 18 16 40 40 H 1.08007 * 120.07478 * 359.69691 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6975 -0.2360 2.4866 6 6 2.1548 -0.8819 3.6212 7 6 2.9482 -2.0049 3.5069 8 6 3.2899 -2.4883 2.2431 9 6 4.1393 -3.6915 2.1132 10 8 4.4350 -4.1106 1.0111 11 7 4.5862 -4.3233 3.2166 12 6 5.4283 -5.5151 3.0877 13 6 5.7900 -6.0253 4.4589 14 8 5.3840 -5.4501 5.4465 15 7 6.5639 -7.1211 4.5877 16 6 6.8934 -7.5849 5.8351 17 1 6.5325 -7.0722 6.7146 18 6 7.6917 -8.7144 5.9680 19 7 8.1312 -9.3378 4.8979 20 14 8.1401 -9.3466 7.6675 21 1 6.9013 -9.6936 8.4094 22 1 8.9942 -10.5543 7.5370 23 1 8.8817 -8.2941 8.4074 24 6 2.8253 -1.8317 1.1023 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.0763 0.6424 2.5815 33 1 1.8895 -0.5068 4.5986 34 1 3.3050 -2.5080 4.3934 35 1 4.3503 -3.9889 4.0960 36 1 4.8841 -6.2876 2.5442 37 1 6.3378 -5.2604 2.5437 38 1 6.8884 -7.5813 3.7979 39 1 8.6882 -10.1265 4.9906 40 1 3.0822 -2.2036 0.1214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597650774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:29 Heat of formation + Delta-G solvation = -67.031171 kcal Electronic energy + Delta-G solvation = -21763.060498 eV Core-core repulsion = 18348.883415 eV Total energy + Delta-G solvation = -3414.177083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29035 -38.94645 -38.00441 -35.54870 -34.49941 -33.71195 -31.44579 -31.22156 -30.15328 -27.62543 -27.43256 -24.81022 -23.90906 -22.70167 -21.32594 -19.76730 -19.42745 -18.17870 -17.58811 -16.40739 -16.03796 -15.52459 -15.29063 -15.19806 -14.83357 -14.46337 -14.03734 -14.02062 -13.93180 -13.74350 -13.65634 -13.34162 -12.67503 -12.37972 -12.31052 -12.16413 -11.90358 -11.73156 -11.64388 -11.42518 -11.11510 -11.08672 -10.89721 -10.51773 -10.32849 -9.82326 -9.64292 -9.11174 -8.93288 -8.75589 -8.65793 -8.11921 -6.52757 -3.94951 0.79208 1.22555 2.92155 3.12864 3.20507 3.22747 3.33357 3.71150 3.82357 4.10027 4.37227 4.52144 4.74240 4.82693 4.87102 4.90561 5.00374 5.11504 5.15655 5.20076 5.31287 5.32042 5.52364 5.55520 5.66653 5.72959 5.86812 5.89851 5.92770 5.94013 5.94468 6.04883 6.23187 6.28098 6.40201 6.62085 6.76328 7.44495 7.76970 7.90039 8.38242 8.44194 9.02818 9.37339 9.85117 10.64004 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043602 B = 0.002550 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.024866 B =10977.095463 C =11428.061923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.093 4.093 6 C -0.125 4.125 7 C -0.088 4.088 8 C -0.125 4.125 9 C 0.554 3.446 10 O -0.547 6.547 11 N -0.701 5.701 12 C 0.108 3.892 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.548 5.548 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.059 4.059 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 17.514 -7.960 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.089 4.089 5 C -0.112 4.112 6 C -0.143 4.143 7 C -0.107 4.107 8 C -0.128 4.128 9 C 0.341 3.659 10 O -0.426 6.426 11 N -0.355 5.355 12 C -0.019 4.019 13 C 0.213 3.787 14 O -0.485 6.485 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.078 4.078 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.250 0.750 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.281 17.364 -8.076 22.750 hybrid contribution 0.442 -0.623 0.839 1.135 sum -11.839 16.740 -7.237 21.743 Atomic orbital electron populations 1.21866 0.94240 1.02178 1.01869 1.20137 0.96000 0.96060 0.95362 1.21865 1.01429 0.94987 1.01870 1.19810 0.98292 0.95859 0.94959 1.21146 0.98791 0.99342 0.91889 1.21089 0.98426 0.95893 0.98850 1.21457 0.96539 0.96007 0.96684 1.19954 1.01381 0.97123 0.94331 1.18244 0.80049 0.83303 0.84307 1.90751 1.58854 1.67005 1.25973 1.45637 1.51281 1.28866 1.09761 1.20987 0.95690 0.87938 0.97309 1.19721 0.85028 0.84320 0.89617 1.90488 1.58795 1.60074 1.39153 1.41787 1.43149 1.23686 1.09616 1.19684 1.29028 1.09610 0.85219 0.87705 1.25333 0.96544 0.96361 0.99470 1.69606 1.34722 1.20205 1.28894 0.85861 0.78640 0.78115 0.81287 1.19756 1.20841 1.19762 1.21163 0.94627 0.93481 0.98527 0.92476 0.92337 0.92388 0.90166 0.92387 0.92342 0.92470 0.85856 0.85371 0.85121 0.75026 0.89642 0.89650 0.76993 0.91502 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.01 37.16 0.33 -0.64 16 2 C -0.06 -0.45 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -0.98 9.01 37.16 0.33 -0.64 16 4 C -0.09 -0.90 4.78 -104.68 -0.50 -1.40 16 5 C -0.09 -0.86 8.71 -39.49 -0.34 -1.20 16 6 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 7 C -0.09 -1.06 9.54 -39.19 -0.37 -1.43 16 8 C -0.12 -1.74 5.87 -104.97 -0.62 -2.36 16 9 C 0.55 9.37 7.77 -12.33 -0.10 9.28 16 10 O -0.55 -10.66 16.35 5.31 0.09 -10.57 16 11 N -0.70 -12.15 5.48 -62.42 -0.34 -12.49 16 12 C 0.11 2.03 6.15 -5.19 -0.03 2.00 16 13 C 0.43 9.84 7.85 -10.98 -0.09 9.76 16 14 O -0.60 -15.28 15.24 5.55 0.08 -15.19 16 15 N -0.55 -13.61 5.29 -10.96 -0.06 -13.67 16 16 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 17 H 0.11 2.95 7.16 -52.48 -0.38 2.58 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 20 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.06 -0.74 9.21 -39.19 -0.36 -1.10 16 25 H 0.06 0.36 7.38 -51.93 -0.38 -0.03 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 7.38 -51.93 -0.38 -0.03 16 32 H 0.12 0.85 7.08 -52.48 -0.37 0.48 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 1.50 6.40 -52.49 -0.34 1.17 16 35 H 0.41 6.90 5.47 -40.82 -0.22 6.67 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.40 9.46 7.90 -40.82 -0.32 9.13 16 39 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 40 H 0.13 1.69 7.53 -52.48 -0.40 1.29 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -31.10 341.88 -7.33 -38.43 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.29 Total: 13.96 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.66 Total: 2.04 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.32 Total: -49.30 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.17 Total: -25.76 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.10 -7.33 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.601 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds