Wall clock time and date at job start Tue Mar 31 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46729 * 2 1 4 4 C 1.50700 * 109.46782 * 119.99724 * 2 1 3 5 5 C 1.38376 * 119.93185 * 299.97632 * 4 2 1 6 6 C 1.38339 * 120.29642 * 180.02562 * 5 4 2 7 7 C 1.37973 * 120.14281 * 359.97438 * 6 5 4 8 8 C 1.39559 * 119.85322 * 0.04350 * 7 6 5 9 9 C 1.47847 * 120.14245 * 180.02562 * 8 7 6 10 10 O 1.21559 * 119.99906 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00120 * 359.94975 * 9 8 7 12 12 C 1.46497 * 119.99671 * 180.02562 * 11 9 8 13 13 C 1.50708 * 109.47014 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99697 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00120 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99947 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00001 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00034 * 180.02562 * 16 15 13 19 19 N 1.31406 * 119.99663 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99906 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47325 * 60.00140 * 20 18 16 22 22 H 1.48497 * 109.46986 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47147 * 300.00003 * 20 18 16 24 24 C 1.37935 * 119.92555 * 120.00434 * 4 2 1 25 25 H 1.08999 * 109.47445 * 299.99896 * 1 2 3 26 26 H 1.09004 * 109.47100 * 60.00418 * 1 2 3 27 27 H 1.09004 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46990 * 239.99824 * 2 1 3 29 29 H 1.09004 * 109.46659 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46988 * 299.99650 * 3 2 1 31 31 H 1.08999 * 109.47073 * 59.99875 * 3 2 1 32 32 H 1.08005 * 119.84839 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.92638 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.07335 * 179.97438 * 7 6 5 35 35 H 0.97000 * 120.00121 * 0.02562 * 11 9 8 36 36 H 1.09004 * 109.47650 * 299.99974 * 12 11 9 37 37 H 1.09002 * 109.47529 * 60.00474 * 12 11 9 38 38 H 0.97002 * 119.99859 * 0.02562 * 15 13 12 39 39 H 0.97006 * 120.00012 * 180.02562 * 19 18 16 40 40 H 1.08007 * 120.07478 * 359.69691 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6975 -0.2360 2.4866 6 6 2.1548 -0.8819 3.6212 7 6 2.9482 -2.0049 3.5069 8 6 3.2899 -2.4883 2.2431 9 6 4.1393 -3.6915 2.1132 10 8 4.4350 -4.1106 1.0111 11 7 4.5862 -4.3233 3.2166 12 6 5.4283 -5.5151 3.0877 13 6 5.7900 -6.0253 4.4589 14 8 5.3840 -5.4501 5.4465 15 7 6.5639 -7.1211 4.5877 16 6 6.8934 -7.5849 5.8351 17 1 6.5325 -7.0722 6.7146 18 6 7.6917 -8.7144 5.9680 19 7 8.1312 -9.3378 4.8979 20 14 8.1401 -9.3466 7.6675 21 1 6.9013 -9.6936 8.4094 22 1 8.9942 -10.5543 7.5370 23 1 8.8817 -8.2941 8.4074 24 6 2.8253 -1.8317 1.1023 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.0763 0.6424 2.5815 33 1 1.8895 -0.5068 4.5986 34 1 3.3050 -2.5080 4.3934 35 1 4.3503 -3.9889 4.0960 36 1 4.8841 -6.2876 2.5442 37 1 6.3378 -5.2604 2.5437 38 1 6.8884 -7.5813 3.7979 39 1 8.6882 -10.1265 4.9906 40 1 3.0822 -2.2036 0.1214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597650774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:28 Heat of formation + Delta-G solvation = -86.971663 kcal Electronic energy + Delta-G solvation = -21763.925183 eV Core-core repulsion = 18348.883415 eV Total energy + Delta-G solvation = -3415.041767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45507 -40.34525 -39.53350 -36.36344 -36.23105 -35.36803 -33.40920 -32.19816 -31.04281 -29.15875 -27.93740 -26.59760 -24.93759 -23.62776 -22.29460 -21.43612 -20.70283 -20.06915 -18.78072 -17.68943 -17.25841 -16.99270 -16.81006 -16.37945 -16.15061 -15.93689 -15.55723 -15.44186 -14.87431 -14.64824 -14.49838 -14.43166 -14.00690 -13.71110 -13.55599 -13.24945 -13.02443 -12.91766 -12.85205 -12.58121 -12.48715 -12.14327 -12.01000 -11.77830 -11.58181 -11.55262 -11.14356 -10.59994 -10.36044 -10.12139 -9.91929 -9.72243 -8.52583 -6.03218 -0.17433 0.37614 1.36929 1.42061 1.53142 1.76258 1.88558 1.93346 2.29995 2.83882 3.06915 3.14370 3.58943 3.66791 3.89524 4.09160 4.16060 4.19181 4.32239 4.34332 4.37319 4.38011 4.49768 4.53525 4.84085 4.85968 4.98521 5.03405 5.03614 5.15912 5.20867 5.31349 5.34944 5.36634 5.43358 5.45875 5.63314 5.89120 5.93490 6.39369 6.46632 7.00551 7.03403 7.40964 7.90896 8.64057 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043602 B = 0.002550 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.024866 B =10977.095463 C =11428.061923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.142 4.142 4 C -0.086 4.086 5 C -0.083 4.083 6 C -0.121 4.121 7 C -0.096 4.096 8 C -0.149 4.149 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.702 5.702 12 C 0.120 3.880 13 C 0.432 3.568 14 O -0.623 6.623 15 N -0.558 5.558 16 C -0.339 4.339 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.073 4.073 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.130 0.870 35 H 0.413 0.587 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 19.193 -7.486 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.086 4.086 5 C -0.101 4.101 6 C -0.138 4.138 7 C -0.115 4.115 8 C -0.152 4.152 9 C 0.344 3.656 10 O -0.461 6.461 11 N -0.356 5.356 12 C -0.008 4.008 13 C 0.219 3.781 14 O -0.512 6.512 15 N -0.193 5.193 16 C -0.468 4.468 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.196 1.196 23 H -0.194 1.194 24 C -0.092 4.092 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.148 0.852 35 H 0.253 0.747 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.476 19.053 -7.616 24.548 hybrid contribution 0.741 -1.047 0.643 1.435 sum -12.734 18.006 -6.973 23.131 Atomic orbital electron populations 1.21856 0.93054 1.01903 1.03094 1.20195 0.96890 0.96513 0.94056 1.21855 1.00787 0.94169 1.03095 1.20083 0.97166 0.94857 0.96540 1.21542 0.97834 0.99671 0.91022 1.21436 0.97116 0.94721 1.00553 1.21547 0.97227 0.96992 0.95746 1.19803 1.02719 0.96800 0.95832 1.18739 0.79657 0.83766 0.83450 1.90720 1.60233 1.68138 1.26968 1.45635 1.51268 1.28502 1.10212 1.20828 0.96635 0.88842 0.94502 1.20340 0.83548 0.83285 0.90889 1.90463 1.59384 1.60617 1.40698 1.41837 1.43877 1.24396 1.09178 1.19717 1.30688 1.10776 0.85598 0.89464 1.26160 0.95812 0.95946 1.03251 1.69676 1.34822 1.20475 1.30583 0.84907 0.78454 0.77757 0.76750 1.19415 1.19616 1.19427 1.21206 0.95715 0.94631 0.97652 0.91394 0.91021 0.93416 0.90769 0.93415 0.91026 0.91386 0.82619 0.82516 0.85190 0.74699 0.88606 0.88618 0.76672 0.91009 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.01 71.98 0.65 -0.91 16 2 C -0.06 -0.80 3.09 -11.54 -0.04 -0.84 16 3 C -0.14 -1.56 9.01 71.98 0.65 -0.91 16 4 C -0.09 -1.60 4.78 -19.90 -0.10 -1.69 16 5 C -0.08 -1.27 8.71 22.33 0.19 -1.07 16 6 C -0.12 -2.06 10.03 22.23 0.22 -1.84 16 7 C -0.10 -2.24 9.54 22.53 0.21 -2.02 16 8 C -0.15 -4.17 5.87 -20.09 -0.12 -4.29 16 9 C 0.55 19.22 7.77 86.79 0.67 19.90 16 10 O -0.58 -23.25 16.35 -3.90 -0.06 -23.31 16 11 N -0.70 -24.73 5.48 -469.68 -2.57 -27.30 16 12 C 0.12 4.54 6.15 85.64 0.53 5.07 16 13 C 0.43 20.27 7.85 87.66 0.69 20.95 16 14 O -0.62 -32.41 15.24 -3.06 -0.05 -32.46 16 15 N -0.56 -28.27 5.29 -306.98 -1.62 -29.90 16 16 C -0.34 -18.71 9.68 84.04 0.81 -17.90 16 17 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 18 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 19 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 20 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 C -0.07 -1.83 9.21 22.53 0.21 -1.62 16 25 H 0.07 0.60 7.38 -2.39 -0.02 0.58 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 28 H 0.07 1.11 7.87 -2.39 -0.02 1.09 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.60 7.38 -2.39 -0.02 0.58 16 32 H 0.16 1.40 7.08 -2.91 -0.02 1.38 16 33 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.13 2.95 6.40 -2.91 -0.02 2.94 16 35 H 0.41 14.13 5.47 -92.71 -0.51 13.62 16 36 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 37 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 39 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 40 H 0.12 3.26 7.53 -2.91 -0.02 3.24 16 Total: -1.00 -67.24 341.88 2.90 -64.34 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -0.17 Total: 40.70 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 5.06 Total: 12.73 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -3.91 Total: -105.75 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -0.11 Total: -55.77 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -67.24 2.90 -64.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.632 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds