Wall clock time and date at job start Tue Mar 31 2020 06:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.47060 * 2 1 4 4 H 1.08999 * 109.46819 * 55.00519 * 3 2 1 5 5 C 1.50702 * 109.46855 * 175.00282 * 3 2 1 6 6 H 1.07993 * 119.99762 * 119.73254 * 5 3 2 7 7 C 1.37875 * 119.99865 * 299.99820 * 5 3 2 8 8 N 1.31516 * 120.00465 * 359.73023 * 7 5 3 9 9 Si 1.86803 * 119.99933 * 179.72674 * 7 5 3 10 10 H 1.48497 * 109.46975 * 90.00305 * 9 7 5 11 11 H 1.48493 * 109.47311 * 210.00123 * 9 7 5 12 12 H 1.48499 * 109.46858 * 330.00253 * 9 7 5 13 13 N 1.46500 * 109.47214 * 295.00224 * 3 2 1 14 14 C 1.34777 * 119.99683 * 84.99756 * 13 3 2 15 15 O 1.21594 * 120.00103 * 0.02562 * 14 13 3 16 16 N 1.34773 * 119.99832 * 179.97438 * 14 13 3 17 17 C 1.40170 * 120.00387 * 175.51225 * 16 14 13 18 18 C 1.38520 * 119.93385 * 34.72206 * 17 16 14 19 19 C 1.38206 * 120.26735 * 179.82023 * 18 17 16 20 20 C 1.38369 * 119.82601 * 0.39372 * 19 18 17 21 21 C 1.37852 * 120.10490 * 359.68373 * 20 19 18 22 22 C 1.38713 * 120.82983 * 0.29776 * 21 20 19 23 23 O 1.36212 * 111.27049 * 179.29611 * 22 21 20 24 24 C 1.43775 * 109.23616 * 18.84794 * 23 22 21 25 25 C 1.51655 * 132.11606 * 180.53729 * 21 20 19 26 26 H 1.08992 * 109.46968 * 59.99451 * 1 2 3 27 27 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46728 * 299.99603 * 1 2 3 29 29 H 1.09003 * 109.46728 * 240.00397 * 2 1 3 30 30 H 1.09001 * 109.47528 * 119.99955 * 2 1 3 31 31 H 0.96991 * 120.00238 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99944 * 265.00065 * 13 3 2 33 33 H 0.97009 * 120.00226 * 355.51557 * 16 14 13 34 34 H 1.07996 * 119.86582 * 0.07171 * 18 17 16 35 35 H 1.08000 * 120.08734 * 180.10320 * 19 18 17 36 36 H 1.07993 * 119.94655 * 179.69981 * 20 19 18 37 37 H 1.08995 * 110.75466 * 90.67369 * 24 23 22 38 38 H 1.08996 * 110.75047 * 213.85575 * 24 23 22 39 39 H 1.09000 * 110.93327 * 46.12405 * 25 21 20 40 40 H 1.08990 * 110.97325 * 282.45316 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1474 1.8850 -0.6544 7 6 4.1433 0.8784 1.2279 8 7 3.4061 0.3418 2.1756 9 14 6.0054 0.8738 1.3777 10 1 6.4487 2.1064 2.0771 11 1 6.4367 -0.3173 2.1525 12 1 6.6108 0.8286 0.0225 13 7 1.6525 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3412 2.6326 -0.4315 16 7 0.0787 3.2675 -2.5182 17 6 -1.2193 3.7740 -2.6716 18 6 -1.8804 4.3217 -1.5845 19 6 -3.1589 4.8265 -1.7288 20 6 -3.7833 4.7769 -2.9626 21 6 -3.1297 4.2313 -4.0468 22 6 -1.8463 3.7205 -3.9200 23 8 -1.3951 3.2186 -5.1031 24 6 -2.1816 3.7598 -6.1781 25 6 -3.5395 4.0498 -5.4956 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5138 0.8900 31 1 3.8292 -0.0567 2.9521 32 1 2.2719 2.1233 -1.9978 33 1 0.7204 3.3510 -3.2409 34 1 -1.3934 4.3580 -0.6213 35 1 -3.6711 5.2544 -0.8796 36 1 -4.7840 5.1664 -3.0764 37 1 -1.7361 4.6792 -6.5578 38 1 -2.2967 3.0289 -6.9784 39 1 -3.9872 4.9616 -5.8909 40 1 -4.2191 3.2049 -5.6059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599843600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:28 Heat of formation + Delta-G solvation = -33.514136 kcal Electronic energy + Delta-G solvation = -23115.977603 eV Core-core repulsion = 19703.253928 eV Total energy + Delta-G solvation = -3412.723675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18484 -39.59599 -37.31787 -35.41796 -34.21712 -32.52278 -31.89673 -30.78103 -29.40111 -28.59693 -26.76476 -23.68029 -23.08040 -22.19168 -22.00629 -20.27263 -19.48113 -18.25640 -17.37597 -17.26187 -16.26207 -15.96970 -15.76225 -15.12042 -14.83781 -14.67824 -14.13005 -13.59247 -13.36133 -13.13911 -13.03386 -12.71687 -12.63320 -12.12057 -11.92691 -11.70410 -11.53103 -11.33155 -11.22646 -10.93974 -10.89506 -10.82664 -10.29592 -10.16145 -10.00303 -9.55681 -9.27941 -9.01836 -8.48804 -8.28793 -7.93187 -7.57141 -6.11308 -4.20451 1.39270 1.42734 3.17805 3.24870 3.26496 3.32619 3.35574 3.65730 4.03056 4.31445 4.33543 4.49458 4.79107 4.92357 5.01929 5.20252 5.23589 5.25517 5.39243 5.52159 5.61445 5.68551 5.92758 6.27142 6.31028 6.44844 6.52699 6.59180 6.69496 6.73320 6.83477 7.05807 7.15510 7.34123 7.39226 7.41765 7.49800 7.66314 7.89182 8.01649 8.20504 8.75981 8.87662 9.28752 9.48319 10.94124 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.003635 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.909974 B = 7701.885441 C = 8022.419349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.718 5.718 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.694 5.694 17 C 0.170 3.830 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.098 4.098 21 C -0.161 4.161 22 C 0.064 3.936 23 O -0.303 6.303 24 C 0.051 3.949 25 C -0.106 4.106 26 H 0.038 0.962 27 H 0.020 0.980 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.403 0.597 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 8.101 -14.637 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.369 5.369 14 C 0.395 3.605 15 O -0.456 6.456 16 N -0.342 5.342 17 C 0.073 3.927 18 C -0.110 4.110 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.162 4.162 22 C 0.017 3.983 23 O -0.217 6.217 24 C -0.024 4.024 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.238 0.762 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.104 7.723 -13.569 19.756 hybrid contribution 1.438 -0.016 -0.752 1.623 sum -10.666 7.707 -14.321 19.449 Atomic orbital electron populations 1.21813 0.98248 0.97890 1.01313 1.21955 0.92724 0.99874 1.02168 1.18722 0.93975 0.88905 0.79951 0.93153 1.21229 0.90677 1.39166 1.06195 0.92104 1.24873 0.98587 0.94792 0.95383 1.69897 1.35110 1.37673 1.09215 0.86450 0.84857 0.77627 0.78164 1.20582 1.21079 1.19883 1.45827 1.13308 1.58470 1.19303 1.16097 0.83653 0.78586 0.82199 1.90867 1.51820 1.64896 1.38031 1.42785 1.11792 1.61303 1.18301 1.16873 0.85633 0.99306 0.90911 1.21265 0.95319 0.95563 0.98851 1.20966 0.95177 1.01547 0.96935 1.20214 0.99670 1.00306 0.91478 1.20492 0.94275 1.05264 0.96210 1.19303 0.92395 0.99236 0.87380 1.86858 1.57698 1.64193 1.12979 1.23787 0.89429 0.99544 0.89659 1.21751 0.98081 1.03194 0.91316 0.94262 0.96039 0.93130 0.95115 0.88303 0.92553 0.78220 0.76233 0.82807 0.85301 0.86129 0.90830 0.87881 0.89311 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.17 5.45 -26.72 -0.15 -3.32 16 3 C 0.29 7.22 2.24 -69.08 -0.15 7.07 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.65 11.31 55.43 0.63 -24.02 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.72 -15.10 5.03 -59.81 -0.30 -15.40 16 14 C 0.69 14.24 6.97 -86.92 -0.61 13.63 16 15 O -0.58 -13.50 10.88 5.28 0.06 -13.45 16 16 N -0.69 -11.66 5.35 -14.02 -0.08 -11.73 16 17 C 0.17 2.78 6.33 -83.35 -0.53 2.25 16 18 C -0.09 -1.44 8.67 -39.49 -0.34 -1.78 16 19 C -0.13 -1.66 10.06 -39.54 -0.40 -2.06 16 20 C -0.10 -1.14 10.03 -39.67 -0.40 -1.54 16 21 C -0.16 -1.98 6.27 -104.12 -0.65 -2.63 16 22 C 0.06 0.94 6.95 -38.82 -0.27 0.67 16 23 O -0.30 -4.07 11.11 -20.42 -0.23 -4.30 16 24 C 0.05 0.45 8.01 38.06 0.30 0.75 16 25 C -0.11 -0.92 7.12 -26.51 -0.19 -1.11 16 26 H 0.04 0.91 5.64 -51.93 -0.29 0.61 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.68 5.96 -51.93 -0.31 2.37 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 7.09 8.56 -40.82 -0.35 6.74 16 33 H 0.40 5.72 8.84 -40.82 -0.36 5.36 16 34 H 0.15 2.78 6.17 -52.49 -0.32 2.46 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -30.99 326.78 -8.83 -39.82 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.36 Total: 12.16 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -3.46 Total: -3.56 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.25 Total: -51.16 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.17 Total: -17.75 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.99 -8.83 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599843600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.307 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds