Wall clock time and date at job start Tue Mar 31 2020 06:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.47060 * 2 1 4 4 H 1.08999 * 109.46819 * 55.00519 * 3 2 1 5 5 C 1.50702 * 109.46855 * 175.00282 * 3 2 1 6 6 H 1.07993 * 119.99762 * 119.73254 * 5 3 2 7 7 C 1.37875 * 119.99865 * 299.99820 * 5 3 2 8 8 N 1.31516 * 120.00465 * 359.73023 * 7 5 3 9 9 Si 1.86803 * 119.99933 * 179.72674 * 7 5 3 10 10 H 1.48497 * 109.46975 * 90.00305 * 9 7 5 11 11 H 1.48493 * 109.47311 * 210.00123 * 9 7 5 12 12 H 1.48499 * 109.46858 * 330.00253 * 9 7 5 13 13 N 1.46500 * 109.47214 * 295.00224 * 3 2 1 14 14 C 1.34777 * 119.99683 * 84.99756 * 13 3 2 15 15 O 1.21594 * 120.00103 * 0.02562 * 14 13 3 16 16 N 1.34773 * 119.99832 * 179.97438 * 14 13 3 17 17 C 1.40170 * 120.00387 * 175.51225 * 16 14 13 18 18 C 1.38520 * 119.93385 * 34.72206 * 17 16 14 19 19 C 1.38206 * 120.26735 * 179.82023 * 18 17 16 20 20 C 1.38369 * 119.82601 * 0.39372 * 19 18 17 21 21 C 1.37852 * 120.10490 * 359.68373 * 20 19 18 22 22 C 1.38713 * 120.82983 * 0.29776 * 21 20 19 23 23 O 1.36212 * 111.27049 * 179.29611 * 22 21 20 24 24 C 1.43775 * 109.23616 * 18.84794 * 23 22 21 25 25 C 1.51655 * 132.11606 * 180.53729 * 21 20 19 26 26 H 1.08992 * 109.46968 * 59.99451 * 1 2 3 27 27 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46728 * 299.99603 * 1 2 3 29 29 H 1.09003 * 109.46728 * 240.00397 * 2 1 3 30 30 H 1.09001 * 109.47528 * 119.99955 * 2 1 3 31 31 H 0.96991 * 120.00238 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99944 * 265.00065 * 13 3 2 33 33 H 0.97009 * 120.00226 * 355.51557 * 16 14 13 34 34 H 1.07996 * 119.86582 * 0.07171 * 18 17 16 35 35 H 1.08000 * 120.08734 * 180.10320 * 19 18 17 36 36 H 1.07993 * 119.94655 * 179.69981 * 20 19 18 37 37 H 1.08995 * 110.75466 * 90.67369 * 24 23 22 38 38 H 1.08996 * 110.75047 * 213.85575 * 24 23 22 39 39 H 1.09000 * 110.93327 * 46.12405 * 25 21 20 40 40 H 1.08990 * 110.97325 * 282.45316 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1474 1.8850 -0.6544 7 6 4.1433 0.8784 1.2279 8 7 3.4061 0.3418 2.1756 9 14 6.0054 0.8738 1.3777 10 1 6.4487 2.1064 2.0771 11 1 6.4367 -0.3173 2.1525 12 1 6.6108 0.8286 0.0225 13 7 1.6525 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3412 2.6326 -0.4315 16 7 0.0787 3.2675 -2.5182 17 6 -1.2193 3.7740 -2.6716 18 6 -1.8804 4.3217 -1.5845 19 6 -3.1589 4.8265 -1.7288 20 6 -3.7833 4.7769 -2.9626 21 6 -3.1297 4.2313 -4.0468 22 6 -1.8463 3.7205 -3.9200 23 8 -1.3951 3.2186 -5.1031 24 6 -2.1816 3.7598 -6.1781 25 6 -3.5395 4.0498 -5.4956 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5138 0.8900 31 1 3.8292 -0.0567 2.9521 32 1 2.2719 2.1233 -1.9978 33 1 0.7204 3.3510 -3.2409 34 1 -1.3934 4.3580 -0.6213 35 1 -3.6711 5.2544 -0.8796 36 1 -4.7840 5.1664 -3.0764 37 1 -1.7361 4.6792 -6.5578 38 1 -2.2967 3.0289 -6.9784 39 1 -3.9872 4.9616 -5.8909 40 1 -4.2191 3.2049 -5.6059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599843600.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:28 Heat of formation + Delta-G solvation = -54.237576 kcal Electronic energy + Delta-G solvation = -23116.876239 eV Core-core repulsion = 19703.253928 eV Total energy + Delta-G solvation = -3413.622311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.21691 -41.08380 -38.49412 -37.09399 -35.71256 -34.34584 -33.14428 -32.42884 -30.42069 -29.78480 -28.64345 -25.17834 -24.41139 -23.32649 -23.20650 -21.77527 -21.30483 -19.81065 -18.74560 -18.23354 -17.79113 -17.19623 -16.98614 -16.69032 -16.40971 -16.05175 -15.64093 -15.16025 -14.57607 -14.47922 -14.27097 -13.98001 -13.87601 -13.58562 -13.45955 -13.19026 -12.86759 -12.72107 -12.69309 -12.64224 -12.29365 -12.12747 -12.06294 -11.75427 -11.61738 -11.28810 -11.06868 -10.85967 -10.53478 -9.72231 -9.30969 -8.80286 -8.15689 -6.32856 0.32672 0.36436 1.45429 1.45867 1.56419 1.79377 2.20663 2.34023 2.43094 2.79600 3.13731 3.44263 3.53619 3.75401 4.09900 4.23497 4.27904 4.44389 4.48391 4.49964 4.56418 4.65078 4.74273 4.84823 4.94737 4.97882 5.05778 5.15273 5.26881 5.32802 5.43944 5.50956 5.56390 5.59764 5.64609 5.71959 5.76991 5.86323 6.15951 6.26245 6.27216 6.74681 7.23256 7.35273 7.71110 8.89945 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.003635 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.909974 B = 7701.885441 C = 8022.419349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.297 3.703 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.262 1.262 13 N -0.716 5.716 14 C 0.694 3.306 15 O -0.611 6.611 16 N -0.680 5.680 17 C 0.134 3.866 18 C -0.114 4.114 19 C -0.129 4.129 20 C -0.087 4.087 21 C -0.161 4.161 22 C 0.056 3.944 23 O -0.325 6.325 24 C 0.042 3.958 25 C -0.100 4.100 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.414 0.586 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 8.730 -17.397 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.186 1.186 13 N -0.368 5.368 14 C 0.395 3.605 15 O -0.491 6.491 16 N -0.329 5.329 17 C 0.038 3.962 18 C -0.135 4.135 19 C -0.148 4.148 20 C -0.106 4.106 21 C -0.163 4.163 22 C 0.009 3.991 23 O -0.239 6.239 24 C -0.032 4.032 25 C -0.136 4.136 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.251 0.749 34 H 0.140 0.860 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.107 0.893 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.039 8.383 -16.403 22.569 hybrid contribution 1.589 -0.142 0.022 1.595 sum -11.450 8.241 -16.381 21.619 Atomic orbital electron populations 1.21629 0.97127 0.98834 1.00077 1.21806 0.93595 0.99343 1.01221 1.18292 0.93524 0.88768 0.80122 0.98009 1.21557 0.91265 1.39218 1.06689 0.91113 1.25751 1.03329 0.94297 0.94954 1.70045 1.37073 1.38342 1.09728 0.85358 0.79042 0.77449 0.78547 1.20403 1.20885 1.18574 1.45471 1.14069 1.58736 1.18559 1.16161 0.83030 0.78514 0.82841 1.90849 1.52688 1.66004 1.39554 1.42486 1.12692 1.60488 1.17205 1.17116 0.85541 1.01238 0.92275 1.21139 0.96935 0.97668 0.97744 1.21235 0.93982 1.00921 0.98662 1.20624 1.00903 0.98701 0.90362 1.21057 0.93265 1.03590 0.98383 1.19411 0.93284 0.99255 0.87170 1.86831 1.58963 1.64690 1.13455 1.24174 0.89123 1.00991 0.88901 1.21874 0.98192 1.05151 0.88424 0.94463 0.93825 0.95330 0.94300 0.90724 0.92533 0.76594 0.74909 0.85968 0.83281 0.82340 0.89306 0.85462 0.86278 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.13 5.45 30.60 0.17 -5.97 16 3 C 0.30 15.56 2.24 44.25 0.10 15.66 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.11 16 5 C -0.55 -29.40 8.73 25.60 0.22 -29.18 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -52.52 11.31 21.45 0.24 -52.28 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 N -0.72 -31.08 5.03 -461.39 -2.32 -33.40 16 14 C 0.69 29.74 6.97 179.06 1.25 30.99 16 15 O -0.61 -30.30 10.88 -4.01 -0.04 -30.34 16 16 N -0.68 -23.58 5.35 -316.53 -1.69 -25.27 16 17 C 0.13 4.47 6.33 38.25 0.24 4.71 16 18 C -0.11 -3.83 8.67 22.33 0.19 -3.63 16 19 C -0.13 -3.27 10.06 22.29 0.22 -3.04 16 20 C -0.09 -1.79 10.03 22.21 0.22 -1.56 16 21 C -0.16 -3.52 6.27 -19.54 -0.12 -3.65 16 22 C 0.06 1.58 6.95 22.76 0.16 1.74 16 23 O -0.32 -8.17 11.11 -95.97 -1.07 -9.24 16 24 C 0.04 0.60 8.01 72.57 0.58 1.18 16 25 C -0.10 -1.30 7.12 30.74 0.22 -1.08 16 26 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 4.19 5.96 -2.39 -0.01 4.18 16 31 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.40 14.86 8.56 -92.71 -0.79 14.07 16 33 H 0.41 11.97 8.84 -92.70 -0.82 11.16 16 34 H 0.12 4.82 6.17 -2.91 -0.02 4.80 16 35 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.25 326.78 1.13 -69.12 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.53 Total: 34.57 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 4.52 Total: 2.47 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -3.77 Total: -110.94 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.11 Total: -39.58 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.25 1.13 -69.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599843600.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.884 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds