Wall clock time and date at job start Tue Mar 31 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46841 * 2 1 4 4 H 1.09000 * 109.47340 * 304.99660 * 3 2 1 5 5 N 1.46505 * 109.47263 * 65.00187 * 3 2 1 6 6 C 1.34776 * 119.99449 * 275.00086 * 5 3 2 7 7 C 1.50705 * 119.99649 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00337 * 359.97438 * 6 5 3 9 9 C 1.50698 * 109.47095 * 184.99967 * 3 2 1 10 10 O 1.21285 * 120.00151 * 239.99960 * 9 3 2 11 11 N 1.34773 * 120.00446 * 60.00039 * 9 3 2 12 12 C 1.39235 * 120.00697 * 175.71261 * 11 9 3 13 13 C 1.39478 * 119.83206 * 215.00886 * 12 11 9 14 14 C 1.36380 * 120.16678 * 179.71337 * 13 12 11 15 15 C 1.40866 * 119.82653 * 0.57621 * 14 13 12 16 16 C 1.41155 * 120.16325 * 179.67458 * 15 14 13 17 17 H 1.08006 * 119.99846 * 214.80885 * 16 15 14 18 18 C 1.39901 * 120.00145 * 34.81090 * 16 15 14 19 19 N 1.30870 * 119.99913 * 355.54141 * 18 16 15 20 20 Si 1.86800 * 120.00047 * 175.54436 * 18 16 15 21 21 H 1.48504 * 109.47207 * 59.99961 * 20 18 16 22 22 H 1.48500 * 109.46939 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46970 * 299.99667 * 20 18 16 24 24 C 1.40877 * 119.67561 * 359.69935 * 15 14 13 25 25 C 1.36373 * 119.82301 * 359.97438 * 24 15 14 26 26 H 1.08991 * 109.47072 * 60.00211 * 1 2 3 27 27 H 1.09006 * 109.46620 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47162 * 299.99732 * 1 2 3 29 29 H 1.08996 * 109.47672 * 240.00009 * 2 1 3 30 30 H 1.09003 * 109.47199 * 119.99344 * 2 1 3 31 31 H 0.97001 * 120.00124 * 95.00206 * 5 3 2 32 32 H 1.09000 * 109.47066 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47264 * 300.00306 * 7 6 5 34 34 H 1.09009 * 109.47111 * 59.99835 * 7 6 5 35 35 H 0.97006 * 119.99257 * 355.71007 * 11 9 3 36 36 H 1.08003 * 119.92114 * 359.97438 * 13 12 11 37 37 H 1.07999 * 120.08991 * 180.25496 * 14 13 12 38 38 H 0.97000 * 120.00110 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.09020 * 179.97438 * 24 15 14 40 40 H 1.07994 * 119.91451 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4350 2.6644 1.3669 7 6 0.0361 3.3376 2.6549 8 8 -0.3394 2.6326 0.4341 9 6 3.5418 1.4444 -0.1238 10 8 4.2215 1.9437 0.7478 11 7 4.1298 0.8913 -1.2031 12 6 5.5107 0.9715 -1.3614 13 6 6.0561 1.1058 -2.6381 14 6 7.4075 1.1908 -2.8006 15 6 8.2536 1.1306 -1.6759 16 6 9.6537 1.2111 -1.8365 17 1 10.3052 0.6471 -1.1853 18 6 10.1974 2.0212 -2.8391 19 7 9.4085 2.6358 -3.6833 20 14 12.0493 2.2257 -2.9728 21 1 12.6785 0.9002 -3.2021 22 1 12.3670 3.1272 -4.1094 23 1 12.5748 2.8119 -1.7137 24 6 7.6956 0.9891 -0.3901 25 6 6.3420 0.9121 -0.2429 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.2719 2.1233 1.9978 32 1 -0.9747 3.7344 2.5595 33 1 0.0672 2.6130 3.4685 34 1 0.7275 4.1530 2.8679 35 1 3.5907 0.4372 -1.8696 36 1 5.4064 1.1467 -3.4999 37 1 7.8283 1.2989 -3.7893 38 1 9.7855 3.1978 -4.3783 39 1 8.3380 0.9418 0.4767 40 1 5.9127 0.8041 0.7421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600956508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:03 Heat of formation + Delta-G solvation = -59.174449 kcal Electronic energy + Delta-G solvation = -22522.755602 eV Core-core repulsion = 19108.919213 eV Total energy + Delta-G solvation = -3413.836390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53608 -39.26283 -37.38438 -35.36614 -34.59431 -33.13016 -32.50716 -29.89411 -29.64835 -29.08655 -27.09477 -24.72597 -22.32055 -21.66313 -20.94646 -20.47933 -19.69096 -17.77925 -17.32081 -17.02658 -16.09036 -15.88559 -15.68438 -15.17924 -14.65196 -14.19608 -14.05256 -13.92201 -13.55831 -13.08286 -12.79841 -12.70927 -12.58636 -12.27040 -12.11664 -12.00223 -11.74677 -11.63054 -11.41786 -11.17241 -11.05246 -11.01150 -10.76955 -10.08712 -9.99728 -9.56212 -9.52195 -9.32252 -9.05433 -8.93418 -7.59801 -6.92696 -6.65679 -4.38735 2.43055 2.50604 2.93865 2.96552 3.04813 3.07247 3.09639 3.28129 3.66822 3.95042 4.63820 4.65615 4.73489 4.83994 4.95670 5.08314 5.18629 5.25584 5.42736 5.60663 5.64277 5.67646 5.81720 5.95259 6.14660 6.23381 6.29332 6.38158 6.67439 6.84872 7.01807 7.14423 7.24297 7.40997 7.58694 7.66676 7.78567 8.00952 8.09353 8.18710 8.26521 8.54009 8.63314 8.88475 8.94584 10.25265 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035584 B = 0.003033 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.671667 B = 9230.086370 C = 9460.800850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.128 3.872 4 H 0.112 0.888 5 N -0.710 5.710 6 C 0.512 3.488 7 C -0.174 4.174 8 O -0.546 6.546 9 C 0.496 3.504 10 O -0.529 6.529 11 N -0.642 5.642 12 C -0.001 4.001 13 C -0.118 4.118 14 C -0.142 4.142 15 C 0.102 3.898 16 C -0.461 4.461 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.811 5.811 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.207 4.207 25 C -0.083 4.083 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.411 0.589 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.397 0.603 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.096 0.904 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 -2.615 6.435 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.019 3.981 4 H 0.130 0.870 5 N -0.364 5.364 6 C 0.300 3.700 7 C -0.233 4.233 8 O -0.423 6.423 9 C 0.281 3.719 10 O -0.406 6.406 11 N -0.285 5.285 12 C -0.093 4.093 13 C -0.139 4.139 14 C -0.162 4.162 15 C 0.099 3.901 16 C -0.491 4.491 17 H 0.094 0.906 18 C -0.146 4.146 19 N -0.438 5.438 20 Si 0.741 3.259 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.227 4.227 25 C -0.103 4.103 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.248 0.752 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.232 0.768 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.924 -2.095 6.183 15.379 hybrid contribution 0.914 0.109 -0.121 0.929 sum -13.010 -1.986 6.062 14.490 Atomic orbital electron populations 1.21799 0.94136 1.00837 1.03189 1.21926 0.97570 0.94226 1.03163 1.20867 0.92167 0.95369 0.89729 0.87037 1.45797 1.16989 1.57425 1.16191 1.20747 0.81126 0.77843 0.90310 1.21909 1.04240 1.01911 0.95252 1.90721 1.51341 1.59174 1.41101 1.20470 0.89357 0.78812 0.83220 1.90678 1.64604 1.45540 1.39807 1.42910 1.07353 1.54462 1.23788 1.17256 0.80172 1.17312 0.94608 1.20326 0.96078 1.03762 0.93685 1.21199 0.91071 1.03640 1.00261 1.17730 0.93689 0.88266 0.90402 1.19483 0.92056 1.24093 1.13513 0.90595 1.25889 1.00479 0.94312 0.93892 1.69748 1.36777 1.23744 1.13491 0.86236 0.82062 0.79001 0.78575 1.19025 1.20406 1.19072 1.20803 0.93490 1.11697 0.96689 1.20369 0.93277 1.00145 0.96527 0.91918 0.93199 0.92446 0.90502 0.91142 0.75248 0.88967 0.89416 0.89228 0.76846 0.88997 0.84987 0.91017 0.88574 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.51 37.16 0.32 -1.18 16 2 C -0.13 -1.37 5.55 -26.73 -0.15 -1.52 16 3 C 0.13 1.61 2.67 -69.08 -0.18 1.43 16 4 H 0.11 1.46 7.58 -51.93 -0.39 1.07 16 5 N -0.71 -8.26 4.90 -54.93 -0.27 -8.53 16 6 C 0.51 5.84 6.51 -10.98 -0.07 5.77 16 7 C -0.17 -1.27 10.32 36.01 0.37 -0.90 16 8 O -0.55 -7.92 14.23 5.56 0.08 -7.84 16 9 C 0.50 8.09 7.05 -10.99 -0.08 8.01 16 10 O -0.53 -10.44 13.26 5.55 0.07 -10.37 16 11 N -0.64 -10.72 5.20 -9.74 -0.05 -10.77 16 12 C 0.00 -0.03 6.31 -83.57 -0.53 -0.56 16 13 C -0.12 -2.64 9.90 -39.79 -0.39 -3.04 16 14 C -0.14 -3.59 8.62 -39.26 -0.34 -3.92 16 15 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 16 C -0.46 -12.14 9.02 -37.85 -0.34 -12.48 16 17 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 18 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 19 N -0.81 -20.89 10.60 55.55 0.59 -20.30 16 20 Si 0.92 18.80 29.56 -169.99 -5.03 13.78 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 24 C -0.21 -5.13 9.74 -39.26 -0.38 -5.51 16 25 C -0.08 -1.93 8.61 -39.79 -0.34 -2.27 16 26 H 0.06 0.71 7.85 -51.93 -0.41 0.31 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.65 5.65 -51.93 -0.29 0.36 16 29 H 0.08 0.72 7.34 -51.93 -0.38 0.33 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.41 4.53 7.79 -40.82 -0.32 4.21 16 32 H 0.09 0.65 8.12 -51.93 -0.42 0.22 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.40 5.21 8.05 -40.82 -0.33 4.88 16 36 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.13 3.46 6.13 -52.49 -0.32 3.13 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.11 2.41 6.22 -52.49 -0.33 2.08 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -30.81 332.40 -7.68 -38.49 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.27 Total: 12.95 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.81 Total: -12.43 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.27 Total: -39.59 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.15 Total: -18.20 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.81 -7.68 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600956508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.685 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds