Wall clock time and date at job start Tue Mar 31 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46841 * 2 1 4 4 H 1.09000 * 109.47340 * 304.99660 * 3 2 1 5 5 N 1.46505 * 109.47263 * 65.00187 * 3 2 1 6 6 C 1.34776 * 119.99449 * 275.00086 * 5 3 2 7 7 C 1.50705 * 119.99649 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00337 * 359.97438 * 6 5 3 9 9 C 1.50698 * 109.47095 * 184.99967 * 3 2 1 10 10 O 1.21285 * 120.00151 * 239.99960 * 9 3 2 11 11 N 1.34773 * 120.00446 * 60.00039 * 9 3 2 12 12 C 1.39235 * 120.00697 * 175.71261 * 11 9 3 13 13 C 1.39478 * 119.83206 * 215.00886 * 12 11 9 14 14 C 1.36380 * 120.16678 * 179.71337 * 13 12 11 15 15 C 1.40866 * 119.82653 * 0.57621 * 14 13 12 16 16 C 1.41155 * 120.16325 * 179.67458 * 15 14 13 17 17 H 1.08006 * 119.99846 * 214.80885 * 16 15 14 18 18 C 1.39901 * 120.00145 * 34.81090 * 16 15 14 19 19 N 1.30870 * 119.99913 * 355.54141 * 18 16 15 20 20 Si 1.86800 * 120.00047 * 175.54436 * 18 16 15 21 21 H 1.48504 * 109.47207 * 59.99961 * 20 18 16 22 22 H 1.48500 * 109.46939 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46970 * 299.99667 * 20 18 16 24 24 C 1.40877 * 119.67561 * 359.69935 * 15 14 13 25 25 C 1.36373 * 119.82301 * 359.97438 * 24 15 14 26 26 H 1.08991 * 109.47072 * 60.00211 * 1 2 3 27 27 H 1.09006 * 109.46620 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47162 * 299.99732 * 1 2 3 29 29 H 1.08996 * 109.47672 * 240.00009 * 2 1 3 30 30 H 1.09003 * 109.47199 * 119.99344 * 2 1 3 31 31 H 0.97001 * 120.00124 * 95.00206 * 5 3 2 32 32 H 1.09000 * 109.47066 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47264 * 300.00306 * 7 6 5 34 34 H 1.09009 * 109.47111 * 59.99835 * 7 6 5 35 35 H 0.97006 * 119.99257 * 355.71007 * 11 9 3 36 36 H 1.08003 * 119.92114 * 359.97438 * 13 12 11 37 37 H 1.07999 * 120.08991 * 180.25496 * 14 13 12 38 38 H 0.97000 * 120.00110 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.09020 * 179.97438 * 24 15 14 40 40 H 1.07994 * 119.91451 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4350 2.6644 1.3669 7 6 0.0361 3.3376 2.6549 8 8 -0.3394 2.6326 0.4341 9 6 3.5418 1.4444 -0.1238 10 8 4.2215 1.9437 0.7478 11 7 4.1298 0.8913 -1.2031 12 6 5.5107 0.9715 -1.3614 13 6 6.0561 1.1058 -2.6381 14 6 7.4075 1.1908 -2.8006 15 6 8.2536 1.1306 -1.6759 16 6 9.6537 1.2111 -1.8365 17 1 10.3052 0.6471 -1.1853 18 6 10.1974 2.0212 -2.8391 19 7 9.4085 2.6358 -3.6833 20 14 12.0493 2.2257 -2.9728 21 1 12.6785 0.9002 -3.2021 22 1 12.3670 3.1272 -4.1094 23 1 12.5748 2.8119 -1.7137 24 6 7.6956 0.9891 -0.3901 25 6 6.3420 0.9121 -0.2429 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.2719 2.1233 1.9978 32 1 -0.9747 3.7344 2.5595 33 1 0.0672 2.6130 3.4685 34 1 0.7275 4.1530 2.8679 35 1 3.5907 0.4372 -1.8696 36 1 5.4064 1.1467 -3.4999 37 1 7.8283 1.2989 -3.7893 38 1 9.7855 3.1978 -4.3783 39 1 8.3380 0.9418 0.4767 40 1 5.9127 0.8041 0.7421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600956508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:02 Heat of formation + Delta-G solvation = -79.234262 kcal Electronic energy + Delta-G solvation = -22523.625461 eV Core-core repulsion = 19108.919213 eV Total energy + Delta-G solvation = -3414.706248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76176 -40.48663 -39.07944 -36.47088 -36.20871 -34.77996 -33.52434 -31.49513 -30.95602 -30.52098 -28.30574 -26.40787 -23.60599 -23.09261 -22.60336 -21.51723 -21.11281 -19.30288 -18.94539 -18.22987 -17.39545 -17.02158 -16.97765 -16.66747 -16.06154 -15.65208 -15.30458 -15.00963 -14.88358 -14.48349 -14.32273 -14.01005 -13.65630 -13.55215 -13.33969 -13.23260 -13.08416 -12.93905 -12.82194 -12.75978 -12.47388 -12.47030 -11.88798 -11.78693 -11.40108 -11.22833 -10.93154 -10.85533 -10.64461 -10.11808 -9.47389 -8.75466 -8.51196 -6.34164 0.75351 1.13421 1.39679 1.42908 1.51157 1.58591 1.71769 1.91919 2.23752 2.48899 2.79708 3.52108 3.67640 3.82919 3.96240 4.02434 4.35642 4.38726 4.49299 4.53292 4.58171 4.66794 4.82682 4.92346 4.99782 5.06225 5.10678 5.13360 5.13928 5.30389 5.36342 5.40795 5.43883 5.68945 5.88557 5.99570 6.12000 6.37856 6.51913 6.60184 6.67943 6.96064 6.98023 7.21500 7.25245 8.41169 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035584 B = 0.003033 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.671667 B = 9230.086370 C = 9460.800850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.138 3.862 4 H 0.111 0.889 5 N -0.711 5.711 6 C 0.509 3.491 7 C -0.167 4.167 8 O -0.580 6.580 9 C 0.500 3.500 10 O -0.562 6.562 11 N -0.636 5.636 12 C 0.018 3.982 13 C -0.118 4.118 14 C -0.160 4.160 15 C 0.069 3.931 16 C -0.498 4.498 17 H 0.074 0.926 18 C 0.028 3.972 19 N -0.841 5.841 20 Si 0.987 3.013 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.265 1.265 24 C -0.221 4.221 25 C -0.093 4.093 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.414 0.586 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.418 0.582 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.285 0.715 39 H 0.097 0.903 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.065 -2.822 6.855 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C 0.029 3.971 4 H 0.128 0.872 5 N -0.365 5.365 6 C 0.298 3.702 7 C -0.226 4.226 8 O -0.460 6.460 9 C 0.287 3.713 10 O -0.441 6.441 11 N -0.281 5.281 12 C -0.076 4.076 13 C -0.138 4.138 14 C -0.180 4.180 15 C 0.066 3.934 16 C -0.529 4.529 17 H 0.092 0.908 18 C -0.184 4.184 19 N -0.469 5.469 20 Si 0.809 3.191 21 H -0.182 1.182 22 H -0.193 1.193 23 H -0.190 1.190 24 C -0.241 4.241 25 C -0.113 4.113 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.252 0.748 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.256 0.744 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.170 -2.321 6.610 16.709 hybrid contribution 1.100 0.163 -0.188 1.128 sum -14.070 -2.158 6.422 15.616 Atomic orbital electron populations 1.21717 0.93828 1.01568 1.02174 1.21926 0.97617 0.92628 1.04162 1.20782 0.88866 0.97029 0.90426 0.87161 1.45883 1.17331 1.57448 1.15817 1.21467 0.80388 0.77132 0.91215 1.21934 1.04601 1.02468 0.93580 1.90709 1.52171 1.60470 1.42618 1.21103 0.90826 0.77331 0.82013 1.90669 1.65822 1.46659 1.40914 1.42815 1.05588 1.54939 1.24743 1.17298 0.82335 1.14219 0.93728 1.20571 0.95448 1.02587 0.95211 1.21175 0.92418 1.05050 0.99407 1.18039 0.94376 0.89635 0.91301 1.19723 0.92464 1.25711 1.14982 0.90828 1.26733 1.05197 0.93414 0.93072 1.69818 1.38694 1.24310 1.14049 0.85165 0.76054 0.79272 0.78653 1.18220 1.19345 1.18953 1.20941 0.94487 1.12233 0.96405 1.20514 0.92928 1.00369 0.97471 0.92950 0.91544 0.93455 0.88897 0.90784 0.74805 0.88575 0.87094 0.87984 0.74418 0.85860 0.86433 0.90478 0.88464 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.51 71.98 0.61 -1.93 16 2 C -0.12 -2.30 5.55 30.59 0.17 -2.13 16 3 C 0.14 3.21 2.67 44.24 0.12 3.33 16 4 H 0.11 2.68 7.58 -2.39 -0.02 2.66 16 5 N -0.71 -15.26 4.90 -446.08 -2.19 -17.45 16 6 C 0.51 10.69 6.51 87.66 0.57 11.26 16 7 C -0.17 -2.03 10.32 71.24 0.74 -1.29 16 8 O -0.58 -16.08 14.23 -3.03 -0.04 -16.12 16 9 C 0.50 15.40 7.05 87.66 0.62 16.01 16 10 O -0.56 -21.50 13.26 -3.04 -0.04 -21.54 16 11 N -0.64 -19.85 5.20 -303.12 -1.58 -21.43 16 12 C 0.02 0.74 6.31 38.56 0.24 0.98 16 13 C -0.12 -5.18 9.90 22.13 0.22 -4.96 16 14 C -0.16 -8.27 8.62 22.48 0.19 -8.08 16 15 C 0.07 3.74 5.55 -21.27 -0.12 3.63 16 16 C -0.50 -27.11 9.02 23.39 0.21 -26.90 16 17 H 0.07 3.86 7.85 -2.91 -0.02 3.83 16 18 C 0.03 1.42 5.42 85.24 0.46 1.88 16 19 N -0.84 -44.22 10.60 21.82 0.23 -43.99 16 20 Si 0.99 38.86 29.56 68.60 2.03 40.89 16 21 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 C -0.22 -11.21 9.74 22.48 0.22 -10.99 16 25 C -0.09 -4.30 8.61 22.13 0.19 -4.11 16 26 H 0.05 1.10 7.85 -2.39 -0.02 1.08 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.05 0.99 5.65 -2.38 -0.01 0.97 16 29 H 0.09 1.43 7.34 -2.39 -0.02 1.41 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.41 8.42 7.79 -92.71 -0.72 7.70 16 32 H 0.10 1.13 8.12 -2.39 -0.02 1.11 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.42 9.71 8.05 -92.70 -0.75 8.96 16 36 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.12 6.35 6.13 -2.91 -0.02 6.33 16 38 H 0.28 13.66 8.30 -92.71 -0.77 12.89 16 39 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.11 5.04 6.22 -2.91 -0.02 5.03 16 Total: -1.00 -67.95 332.40 2.47 -65.49 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.39 Total: 37.45 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.45 Total: -23.30 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.53 Total: -82.87 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.08 Total: -37.66 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -67.95 2.47 -65.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600956508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.749 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds