Wall clock time and date at job start Tue Mar 31 2020 06:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47191 * 2 1 4 4 N 1.46497 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99986 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00007 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00451 * 179.97438 * 5 4 3 8 8 N 1.46494 * 109.47597 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00009 * 179.97438 * 8 7 5 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28589 * 356.68203 * 11 9 8 13 13 C 1.38221 * 120.09856 * 180.27824 * 12 11 9 14 14 C 1.38826 * 120.67147 * 359.70359 * 13 12 11 15 15 C 1.37601 * 120.57272 * 359.97438 * 14 13 12 16 16 C 1.40712 * 119.87956 * 0.02809 * 15 14 13 17 17 C 1.40891 * 120.32826 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99945 * 145.79815 * 17 16 15 19 19 C 1.40280 * 119.99726 * 325.79419 * 17 16 15 20 20 N 1.30629 * 119.99933 * 340.74440 * 19 17 16 21 21 Si 1.86801 * 119.99539 * 160.74541 * 19 17 16 22 22 H 1.48504 * 109.46785 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47134 * 299.99889 * 21 19 17 24 24 H 1.48491 * 109.47228 * 59.99956 * 21 19 17 25 25 H 1.09004 * 109.47250 * 300.00302 * 1 2 3 26 26 H 1.09005 * 109.47069 * 60.00126 * 1 2 3 27 27 H 1.08998 * 109.47635 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47281 * 239.99387 * 2 1 3 29 29 H 1.09005 * 109.47069 * 119.99874 * 2 1 3 30 30 H 1.08999 * 109.46806 * 59.99690 * 3 2 1 31 31 H 1.08999 * 109.47133 * 299.99486 * 3 2 1 32 32 H 0.97001 * 120.00626 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.46984 * 59.99743 * 7 5 4 34 34 H 1.09005 * 109.47130 * 300.00043 * 7 5 4 35 35 H 0.96994 * 119.99831 * 359.97438 * 8 7 5 36 36 H 1.08007 * 119.95363 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.66821 * 179.72086 * 13 12 11 38 38 H 1.08002 * 119.71786 * 180.02562 * 14 13 12 39 39 H 1.07990 * 120.06274 * 180.02562 * 15 14 13 40 40 H 0.96992 * 120.00306 * 354.83710 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1789 2.6096 -0.0002 6 8 3.5725 3.6599 0.0002 7 6 5.6859 2.6096 -0.0003 8 7 6.1742 3.9908 -0.0004 9 6 7.4993 4.2370 0.0001 10 8 8.2895 3.3126 0.0001 11 6 7.9908 5.6270 0.0005 12 6 7.0933 6.6891 -0.0691 13 6 7.5586 7.9906 -0.0742 14 6 8.9194 8.2565 -0.0042 15 6 9.8304 7.2281 0.0722 16 6 9.3827 5.8941 0.0790 17 6 10.3073 4.8338 0.1563 18 1 10.0501 3.9310 0.6902 19 6 11.5618 4.9508 -0.4603 20 7 11.7476 5.8394 -1.3996 21 14 12.9667 3.8359 0.0620 22 1 14.1771 4.1582 -0.7358 23 1 13.2546 4.0447 1.5037 24 1 12.5854 2.4191 -0.1665 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6024 -0.0006 33 1 6.0492 2.0961 -0.8905 34 1 6.0493 2.0954 0.8896 35 1 5.5439 4.7280 -0.0008 36 1 6.0321 6.4957 -0.1233 37 1 6.8565 8.8091 -0.1330 38 1 9.2660 9.2793 -0.0089 39 1 10.8870 7.4443 0.1267 40 1 11.0005 6.3666 -1.7231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600964615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:17 Heat of formation + Delta-G solvation = -70.537379 kcal Electronic energy + Delta-G solvation = -22172.863877 eV Core-core repulsion = 18758.534753 eV Total energy + Delta-G solvation = -3414.329123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02723 -38.78541 -36.94888 -36.07499 -34.15527 -33.51249 -32.92056 -30.24849 -29.40148 -28.04724 -25.85817 -24.93728 -22.33825 -21.97961 -20.98329 -20.49927 -19.56533 -18.19855 -17.26445 -16.48392 -16.21427 -15.86240 -15.24047 -15.05171 -14.69661 -14.18464 -14.06833 -13.89771 -13.64499 -13.40383 -13.05140 -12.89862 -12.58331 -12.45195 -12.22423 -12.09978 -11.69745 -11.55230 -11.29076 -11.12251 -10.89222 -10.72613 -10.36109 -10.16319 -10.01262 -9.60533 -9.34357 -9.06240 -8.56447 -8.47170 -7.76375 -7.58164 -7.13210 -4.44586 2.25516 2.48093 2.76917 2.85234 3.20837 3.32105 3.41456 3.99139 4.04127 4.06602 4.42333 4.56404 4.62949 4.65456 4.84075 5.20986 5.23430 5.38325 5.43502 5.47915 5.55837 5.60124 5.71525 5.79715 5.94887 6.05142 6.16564 6.21975 6.52058 6.75259 6.93627 7.02928 7.27280 7.30768 7.53065 7.62422 7.75891 7.90578 8.00689 8.11281 8.23039 8.37236 8.75063 8.87374 9.31431 10.05829 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.003405 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.798711 B = 8220.178492 C = 9436.700726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.118 3.882 4 N -0.732 5.732 5 C 0.510 3.490 6 O -0.536 6.536 7 C 0.107 3.893 8 N -0.739 5.739 9 C 0.566 3.434 10 O -0.539 6.539 11 C -0.265 4.265 12 C -0.042 4.042 13 C -0.258 4.258 14 C -0.075 4.075 15 C -0.201 4.201 16 C 0.122 3.878 17 C -0.467 4.467 18 H 0.105 0.895 19 C 0.031 3.969 20 N -0.794 5.794 21 Si 1.071 2.929 22 H -0.275 1.275 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.403 0.597 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.404 0.596 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.539 -9.894 1.986 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.385 5.385 5 C 0.296 3.704 6 O -0.412 6.412 7 C -0.021 4.021 8 N -0.397 5.397 9 C 0.361 3.639 10 O -0.418 6.418 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.278 4.278 14 C -0.094 4.094 15 C -0.221 4.221 16 C 0.117 3.883 17 C -0.494 4.494 18 H 0.123 0.877 19 C -0.191 4.191 20 N -0.417 5.417 21 Si 0.894 3.106 22 H -0.200 1.200 23 H -0.200 1.200 24 H -0.198 1.198 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.238 0.762 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.241 0.759 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.796 -10.083 1.677 16.377 hybrid contribution -1.961 0.379 0.165 2.004 sum -14.758 -9.704 1.842 17.758 Atomic orbital electron populations 1.21679 0.94529 1.02168 1.02390 1.21743 0.97017 0.95799 1.02871 1.21413 0.79415 0.97195 1.02573 1.45929 1.07420 1.08747 1.76413 1.20833 0.90418 0.83732 0.75375 1.90692 1.70172 1.31276 1.49070 1.20849 0.89174 0.87863 1.04199 1.45806 1.08290 1.06167 1.79467 1.18381 0.80077 0.90067 0.75373 1.90673 1.54387 1.46306 1.50422 1.19318 0.94574 0.90015 1.23077 1.20791 0.96647 0.93019 0.95593 1.20263 0.94905 0.95220 1.17387 1.20758 0.93485 0.97283 0.97839 1.21243 0.98391 0.92547 1.09876 1.17501 0.90603 0.92536 0.87656 1.21160 0.97957 1.02997 1.27268 0.87713 1.27272 1.00971 0.97520 0.93332 1.70380 1.37736 1.15106 1.18486 0.83550 0.74312 0.75695 0.77010 1.19975 1.19980 1.19818 0.92317 0.92320 0.92156 0.91188 0.91193 0.91413 0.91419 0.76220 0.89021 0.89016 0.75862 0.88820 0.88808 0.88838 0.87497 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.14 -0.78 6.05 -26.73 -0.16 -0.94 16 3 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 4 N -0.73 -6.93 5.56 -60.30 -0.33 -7.26 16 5 C 0.51 6.91 7.90 -10.99 -0.09 6.82 16 6 O -0.54 -9.13 15.67 5.56 0.09 -9.04 16 7 C 0.11 1.59 6.15 -5.20 -0.03 1.56 16 8 N -0.74 -14.05 5.48 -62.56 -0.34 -14.39 16 9 C 0.57 13.38 7.73 -12.52 -0.10 13.28 16 10 O -0.54 -14.05 13.56 5.27 0.07 -13.98 16 11 C -0.26 -6.62 5.92 -104.37 -0.62 -7.24 16 12 C -0.04 -0.93 9.53 -39.22 -0.37 -1.30 16 13 C -0.26 -5.63 10.03 -39.37 -0.39 -6.02 16 14 C -0.07 -1.69 10.01 -39.60 -0.40 -2.09 16 15 C -0.20 -5.09 7.87 -38.88 -0.31 -5.39 16 16 C 0.12 3.28 5.17 -106.54 -0.55 2.73 16 17 C -0.47 -12.86 7.65 -37.81 -0.29 -13.15 16 18 H 0.11 2.99 5.93 -52.49 -0.31 2.68 16 19 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 20 N -0.79 -21.36 12.57 55.56 0.70 -20.66 16 21 Si 1.07 22.46 29.98 -169.99 -5.10 17.36 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 2.67 8.47 -40.82 -0.35 2.33 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.40 7.49 5.48 -40.82 -0.22 7.27 16 36 H 0.09 1.83 6.41 -52.48 -0.34 1.49 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.11 2.74 6.94 -52.49 -0.36 2.37 16 40 H 0.30 8.23 6.55 -40.82 -0.27 7.97 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -32.16 337.95 -8.17 -40.32 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.30 Total: 13.03 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.05 Total: -10.47 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.02 Total: -42.31 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.16 Total: -23.02 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.10 Total: 17.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.16 -8.17 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600964615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.215 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds