Wall clock time and date at job start Tue Mar 31 2020 06:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47191 * 2 1 4 4 N 1.46497 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99986 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00007 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00451 * 179.97438 * 5 4 3 8 8 N 1.46494 * 109.47597 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00009 * 179.97438 * 8 7 5 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28589 * 356.68203 * 11 9 8 13 13 C 1.38221 * 120.09856 * 180.27824 * 12 11 9 14 14 C 1.38826 * 120.67147 * 359.70359 * 13 12 11 15 15 C 1.37601 * 120.57272 * 359.97438 * 14 13 12 16 16 C 1.40712 * 119.87956 * 0.02809 * 15 14 13 17 17 C 1.40891 * 120.32826 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99945 * 145.79815 * 17 16 15 19 19 C 1.40280 * 119.99726 * 325.79419 * 17 16 15 20 20 N 1.30629 * 119.99933 * 340.74440 * 19 17 16 21 21 Si 1.86801 * 119.99539 * 160.74541 * 19 17 16 22 22 H 1.48504 * 109.46785 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47134 * 299.99889 * 21 19 17 24 24 H 1.48491 * 109.47228 * 59.99956 * 21 19 17 25 25 H 1.09004 * 109.47250 * 300.00302 * 1 2 3 26 26 H 1.09005 * 109.47069 * 60.00126 * 1 2 3 27 27 H 1.08998 * 109.47635 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47281 * 239.99387 * 2 1 3 29 29 H 1.09005 * 109.47069 * 119.99874 * 2 1 3 30 30 H 1.08999 * 109.46806 * 59.99690 * 3 2 1 31 31 H 1.08999 * 109.47133 * 299.99486 * 3 2 1 32 32 H 0.97001 * 120.00626 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.46984 * 59.99743 * 7 5 4 34 34 H 1.09005 * 109.47130 * 300.00043 * 7 5 4 35 35 H 0.96994 * 119.99831 * 359.97438 * 8 7 5 36 36 H 1.08007 * 119.95363 * 0.02562 * 12 11 9 37 37 H 1.07993 * 119.66821 * 179.72086 * 13 12 11 38 38 H 1.08002 * 119.71786 * 180.02562 * 14 13 12 39 39 H 1.07990 * 120.06274 * 180.02562 * 15 14 13 40 40 H 0.96992 * 120.00306 * 354.83710 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1789 2.6096 -0.0002 6 8 3.5725 3.6599 0.0002 7 6 5.6859 2.6096 -0.0003 8 7 6.1742 3.9908 -0.0004 9 6 7.4993 4.2370 0.0001 10 8 8.2895 3.3126 0.0001 11 6 7.9908 5.6270 0.0005 12 6 7.0933 6.6891 -0.0691 13 6 7.5586 7.9906 -0.0742 14 6 8.9194 8.2565 -0.0042 15 6 9.8304 7.2281 0.0722 16 6 9.3827 5.8941 0.0790 17 6 10.3073 4.8338 0.1563 18 1 10.0501 3.9310 0.6902 19 6 11.5618 4.9508 -0.4603 20 7 11.7476 5.8394 -1.3996 21 14 12.9667 3.8359 0.0620 22 1 14.1771 4.1582 -0.7358 23 1 13.2546 4.0447 1.5037 24 1 12.5854 2.4191 -0.1665 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6024 -0.0006 33 1 6.0492 2.0961 -0.8905 34 1 6.0493 2.0954 0.8896 35 1 5.5439 4.7280 -0.0008 36 1 6.0321 6.4957 -0.1233 37 1 6.8565 8.8091 -0.1330 38 1 9.2660 9.2793 -0.0089 39 1 10.8870 7.4443 0.1267 40 1 11.0005 6.3666 -1.7231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600964615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:17 Heat of formation + Delta-G solvation = -92.603775 kcal Electronic energy + Delta-G solvation = -22173.820747 eV Core-core repulsion = 18758.534753 eV Total energy + Delta-G solvation = -3415.285994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29594 -40.43183 -38.75310 -36.92962 -35.97654 -35.18260 -33.67950 -32.02738 -31.26963 -29.30192 -27.20721 -26.37758 -24.04476 -22.81012 -22.59498 -21.63265 -21.27516 -20.01711 -18.73947 -17.62446 -17.28277 -17.14349 -16.60748 -16.42179 -16.22943 -15.82801 -15.65439 -15.46743 -15.23484 -14.54357 -14.40748 -13.99539 -13.90564 -13.81132 -13.60768 -13.26238 -12.96697 -12.90848 -12.69513 -12.50315 -12.05866 -12.01376 -11.94751 -11.76839 -11.48293 -11.16051 -10.95279 -10.43468 -10.27448 -10.08188 -9.63152 -9.50765 -9.10643 -6.46227 0.37623 0.89893 1.38879 1.49283 1.64416 1.79591 1.81176 2.20857 2.33134 2.54429 2.74495 3.54878 3.60233 3.90361 4.05770 4.16451 4.24102 4.30809 4.33744 4.36195 4.47558 4.65282 4.72715 4.76937 4.84675 4.87131 5.12760 5.14569 5.23392 5.25793 5.41009 5.41576 5.43887 5.64552 5.69952 5.87737 5.95412 6.18601 6.31758 6.36510 6.62323 6.82356 6.90061 7.03568 7.51294 8.04677 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.003405 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.798711 B = 8220.178492 C = 9436.700726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.115 3.885 4 N -0.711 5.711 5 C 0.516 3.484 6 O -0.573 6.573 7 C 0.103 3.897 8 N -0.726 5.726 9 C 0.563 3.437 10 O -0.571 6.571 11 C -0.285 4.285 12 C -0.044 4.044 13 C -0.246 4.246 14 C -0.070 4.070 15 C -0.224 4.224 16 C 0.096 3.904 17 C -0.506 4.506 18 H 0.085 0.915 19 C -0.003 4.003 20 N -0.816 5.816 21 Si 1.118 2.882 22 H -0.266 1.266 23 H -0.259 1.259 24 H -0.268 1.268 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.420 0.580 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.407 0.593 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 -10.359 2.273 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.008 4.008 4 N -0.364 5.364 5 C 0.302 3.698 6 O -0.453 6.453 7 C -0.024 4.024 8 N -0.383 5.383 9 C 0.357 3.643 10 O -0.452 6.452 11 C -0.290 4.290 12 C -0.063 4.063 13 C -0.265 4.265 14 C -0.089 4.089 15 C -0.243 4.243 16 C 0.092 3.908 17 C -0.534 4.534 18 H 0.103 0.897 19 C -0.219 4.219 20 N -0.440 5.440 21 Si 0.935 3.065 22 H -0.190 1.190 23 H -0.184 1.184 24 H -0.193 1.193 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.257 0.743 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.246 0.754 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.651 -10.583 1.969 18.181 hybrid contribution -1.699 0.587 0.088 1.799 sum -16.350 -9.996 2.056 19.274 Atomic orbital electron populations 1.21695 0.94081 1.02853 1.02230 1.21701 0.97272 0.93720 1.03838 1.21542 0.78316 0.99145 1.01776 1.45805 1.08054 1.08260 1.74258 1.20533 0.89641 0.84278 0.75356 1.90679 1.70517 1.32763 1.51346 1.21071 0.90440 0.85570 1.05331 1.45590 1.06706 1.08291 1.77687 1.18314 0.81327 0.89388 0.75312 1.90651 1.55617 1.46944 1.51978 1.19734 0.94609 0.91871 1.22751 1.21132 0.97847 0.92689 0.94602 1.20784 0.95190 0.96137 1.14411 1.21156 0.93653 0.98218 0.95873 1.21224 0.98395 0.92887 1.11798 1.17898 0.91764 0.93304 0.87815 1.21118 0.99649 1.02937 1.29688 0.89704 1.28541 1.02935 0.98033 0.92370 1.70494 1.36843 1.16740 1.19877 0.83000 0.71848 0.74127 0.77551 1.19043 1.18396 1.19267 0.92501 0.92548 0.91036 0.90236 0.90179 0.92221 0.92296 0.74303 0.88017 0.87780 0.75427 0.85818 0.84870 0.85571 0.88918 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.13 -1.13 6.05 30.59 0.19 -0.95 16 3 C 0.12 1.76 5.67 86.38 0.49 2.25 16 4 N -0.71 -11.99 5.56 -463.07 -2.57 -14.56 16 5 C 0.52 13.19 7.90 87.66 0.69 13.88 16 6 O -0.57 -18.87 15.67 -3.04 -0.05 -18.92 16 7 C 0.10 2.93 6.15 85.63 0.53 3.45 16 8 N -0.73 -27.06 5.48 -470.10 -2.57 -29.63 16 9 C 0.56 26.83 7.73 86.67 0.67 27.50 16 10 O -0.57 -30.52 13.56 -4.06 -0.06 -30.57 16 11 C -0.28 -14.33 5.92 -19.70 -0.12 -14.44 16 12 C -0.04 -1.88 9.53 22.50 0.21 -1.67 16 13 C -0.25 -9.98 10.03 22.41 0.22 -9.75 16 14 C -0.07 -3.07 10.01 22.26 0.22 -2.84 16 15 C -0.22 -11.50 7.87 22.72 0.18 -11.32 16 16 C 0.10 5.34 5.17 -21.11 -0.11 5.23 16 17 C -0.51 -29.14 7.65 23.42 0.18 -28.96 16 18 H 0.09 5.10 5.93 -2.91 -0.02 5.09 16 19 C 0.00 -0.18 5.04 85.37 0.43 0.25 16 20 N -0.82 -45.57 12.57 21.88 0.28 -45.30 16 21 Si 1.12 46.40 29.98 68.60 2.06 48.45 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.42 4.45 8.47 -92.71 -0.79 3.66 16 33 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 34 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 35 H 0.41 14.58 5.48 -92.71 -0.51 14.07 16 36 H 0.12 4.48 6.41 -2.91 -0.02 4.47 16 37 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 39 H 0.09 4.93 6.94 -2.92 -0.02 4.91 16 40 H 0.28 16.34 6.55 -92.71 -0.61 15.73 16 Total: -1.00 -72.25 337.95 1.53 -70.72 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.06 Total: 37.71 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 4.50 Total: -17.90 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -4.87 Total: -89.49 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.10 Total: -49.49 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.06 Total: 48.45 kcal Total: -72.25 1.53 -70.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600964615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.883 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds