Wall clock time and date at job start Tue Mar 31 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46989 * 2 1 4 4 H 1.08998 * 109.46828 * 304.99848 * 3 2 1 5 5 N 1.46502 * 109.47103 * 64.99535 * 3 2 1 6 6 C 1.34773 * 120.00280 * 275.00437 * 5 3 2 7 7 O 1.21613 * 119.99846 * 359.97438 * 6 5 3 8 8 C 1.47433 * 120.00467 * 180.02562 * 6 5 3 9 9 C 1.39223 * 120.27766 * 355.07535 * 8 6 5 10 10 C 1.38223 * 120.09316 * 180.02562 * 9 8 6 11 11 C 1.38824 * 120.67130 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.57485 * 359.97438 * 11 10 9 13 13 C 1.40708 * 119.87873 * 359.68098 * 12 11 10 14 14 C 1.40895 * 120.33013 * 180.29696 * 13 12 11 15 15 H 1.07992 * 119.99891 * 141.58515 * 14 13 12 16 16 C 1.40266 * 119.99756 * 321.59041 * 14 13 12 17 17 N 1.30629 * 120.00010 * 174.30020 * 16 14 13 18 18 Si 1.86805 * 120.00122 * 354.29743 * 16 14 13 19 19 H 1.48494 * 109.47148 * 89.41197 * 18 16 14 20 20 H 1.48503 * 109.46987 * 209.41090 * 18 16 14 21 21 H 1.48501 * 109.47208 * 329.41013 * 18 16 14 22 22 C 1.50695 * 109.47000 * 184.99729 * 3 2 1 23 23 O 1.21285 * 119.99817 * 239.99942 * 22 3 2 24 24 N 1.34775 * 120.00206 * 60.00226 * 22 3 2 25 25 C 1.46497 * 120.00327 * 180.02562 * 24 22 3 26 26 H 1.08997 * 109.47268 * 299.99766 * 1 2 3 27 27 H 1.09004 * 109.46837 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46652 * 60.00632 * 1 2 3 29 29 H 1.08998 * 109.46982 * 119.99682 * 2 1 3 30 30 H 1.08998 * 109.47747 * 240.00006 * 2 1 3 31 31 H 0.97001 * 119.99896 * 94.99951 * 5 3 2 32 32 H 1.08009 * 119.95516 * 0.02562 * 9 8 6 33 33 H 1.07997 * 119.66242 * 179.97438 * 10 9 8 34 34 H 1.08006 * 119.71375 * 179.97438 * 11 10 9 35 35 H 1.08003 * 120.06222 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00227 * 179.97438 * 17 16 14 37 37 H 0.97000 * 119.99846 * 359.97438 * 24 22 3 38 38 H 1.09004 * 109.46771 * 300.00002 * 25 24 22 39 39 H 1.08998 * 109.47367 * 59.99490 * 25 24 22 40 40 H 1.08994 * 109.47711 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6523 2.0976 1.2518 6 6 0.4350 2.6644 1.3669 7 8 -0.3415 2.6325 0.4315 8 6 0.0450 3.3240 2.6264 9 6 0.8875 3.2766 3.7338 10 6 0.5179 3.8960 4.9129 11 6 -0.6919 4.5699 5.0098 12 6 -1.5456 4.6341 3.9325 13 6 -1.1897 4.0181 2.7185 14 6 -2.0538 4.0832 1.6075 15 1 -1.6480 4.2073 0.6144 16 6 -3.4410 3.9871 1.7915 17 7 -4.2476 4.1585 0.7784 18 14 -4.1350 3.6137 3.4852 19 1 -4.3637 4.8850 4.2176 20 1 -5.4216 2.8858 3.3435 21 1 -3.1715 2.7735 4.2408 22 6 3.5419 1.4444 -0.1238 23 8 4.2215 1.9436 0.7479 24 7 4.1298 0.8912 -1.2030 25 6 5.5898 0.8925 -1.3231 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.8935 -0.5138 -0.8899 31 1 2.2718 2.1232 1.9978 32 1 1.8313 2.7551 3.6715 33 1 1.1766 3.8545 5.7677 34 1 -0.9655 5.0481 5.9388 35 1 -2.4849 5.1602 4.0172 36 1 -5.2069 4.0916 0.9055 37 1 3.5862 0.4916 -1.9000 38 1 5.9535 1.9200 -1.3228 39 1 6.0241 0.3532 -0.4813 40 1 5.8783 0.4057 -2.2547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601620389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:14 Heat of formation + Delta-G solvation = -52.096999 kcal Electronic energy + Delta-G solvation = -23409.263716 eV Core-core repulsion = 19995.734228 eV Total energy + Delta-G solvation = -3413.529488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22263 -38.82633 -37.11813 -34.83481 -34.77437 -33.60240 -32.00331 -30.44642 -29.83679 -28.25925 -25.84765 -25.04070 -22.52705 -21.83726 -21.12032 -20.13244 -19.57383 -17.95756 -17.35972 -16.45784 -16.14478 -15.57280 -15.26898 -14.98105 -14.56269 -14.15080 -14.05598 -13.88919 -13.38555 -13.12862 -12.98471 -12.66447 -12.50463 -12.38907 -12.09829 -11.93685 -11.75394 -11.49114 -11.18976 -10.92659 -10.70181 -10.61608 -10.42392 -10.06851 -9.84645 -9.75965 -9.31223 -9.24497 -8.55481 -8.36496 -7.79704 -7.56568 -6.85596 -4.44524 2.11374 2.53904 2.62395 2.97162 3.11044 3.19327 3.30679 3.91715 3.98507 4.01283 4.58925 4.62399 4.99578 5.10894 5.21443 5.29649 5.41354 5.45527 5.57628 5.73261 5.85679 5.95903 5.98296 6.08230 6.17994 6.20783 6.37756 6.45418 6.52847 6.81135 6.85987 6.99330 7.12854 7.24224 7.32365 7.41595 7.60831 7.76039 8.02867 8.07127 8.33956 8.50045 8.64553 8.85375 9.32733 10.12551 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020733 B = 0.004993 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.193264 B = 5606.595371 C = 6475.783296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.133 3.867 4 H 0.112 0.888 5 N -0.730 5.730 6 C 0.565 3.435 7 O -0.519 6.519 8 C -0.245 4.245 9 C -0.041 4.041 10 C -0.250 4.250 11 C -0.065 4.065 12 C -0.227 4.227 13 C 0.120 3.880 14 C -0.397 4.397 15 H 0.115 0.885 16 C 0.080 3.920 17 N -0.799 5.799 18 Si 0.907 3.093 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.243 1.243 22 C 0.511 3.489 23 O -0.534 6.534 24 N -0.735 5.735 25 C 0.088 3.912 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.401 0.599 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.286 0.714 37 H 0.404 0.596 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.374 -7.950 -2.593 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.023 3.977 4 H 0.130 0.870 5 N -0.387 5.387 6 C 0.358 3.642 7 O -0.396 6.396 8 C -0.250 4.250 9 C -0.060 4.060 10 C -0.270 4.270 11 C -0.084 4.084 12 C -0.246 4.246 13 C 0.115 3.885 14 C -0.424 4.424 15 H 0.133 0.867 16 C -0.139 4.139 17 N -0.423 5.423 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.218 1.218 21 H -0.166 1.166 22 C 0.297 3.703 23 O -0.409 6.409 24 N -0.388 5.388 25 C -0.056 4.056 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.238 0.762 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.057 -7.580 -2.821 13.700 hybrid contribution -0.237 -0.317 0.698 0.803 sum 10.820 -7.897 -2.122 13.563 Atomic orbital electron populations 1.21821 0.93324 1.00516 1.04630 1.21911 0.98510 0.94139 1.01794 1.20681 0.89627 0.95631 0.91738 0.87030 1.45816 1.17981 1.60228 1.14720 1.18290 0.80006 0.77315 0.88580 1.90773 1.50063 1.58642 1.40131 1.19417 1.01225 1.10835 0.93545 1.20856 0.96310 0.95862 0.93008 1.20317 0.99202 1.09641 0.97818 1.20751 0.94206 0.96692 0.96737 1.21185 1.01072 1.06942 0.95368 1.17553 0.91282 0.87734 0.91938 1.19916 0.89625 1.36300 0.96584 0.86717 1.26271 0.97011 0.91942 0.98722 1.69543 1.05311 1.34512 1.32936 0.86417 0.78051 0.79853 0.82359 1.19514 1.21792 1.16615 1.20948 0.90789 0.77042 0.81485 1.90692 1.65494 1.44643 1.40117 1.45761 1.08171 1.61214 1.23616 1.21526 0.79880 1.02355 1.01845 0.91041 0.93762 0.91750 0.91690 0.91650 0.76244 0.88468 0.88459 0.88541 0.87695 0.90384 0.76218 0.92219 0.92247 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.51 37.16 0.32 -1.99 16 2 C -0.12 -1.60 5.55 -26.73 -0.15 -1.75 16 3 C 0.13 1.97 2.67 -69.08 -0.18 1.79 16 4 H 0.11 1.74 7.58 -51.93 -0.39 1.35 16 5 N -0.73 -13.21 4.85 -56.01 -0.27 -13.48 16 6 C 0.56 12.56 6.29 -12.52 -0.08 12.48 16 7 O -0.52 -12.85 10.81 5.27 0.06 -12.80 16 8 C -0.25 -5.78 5.92 -104.37 -0.62 -6.40 16 9 C -0.04 -0.86 9.52 -39.22 -0.37 -1.23 16 10 C -0.25 -5.05 10.03 -39.37 -0.39 -5.45 16 11 C -0.07 -1.37 10.01 -39.60 -0.40 -1.77 16 12 C -0.23 -5.38 6.94 -38.88 -0.27 -5.65 16 13 C 0.12 3.07 5.04 -106.54 -0.54 2.53 16 14 C -0.40 -10.99 8.08 -37.81 -0.31 -11.29 16 15 H 0.12 3.49 6.37 -52.49 -0.33 3.15 16 16 C 0.08 2.12 5.50 -17.30 -0.10 2.03 16 17 N -0.80 -21.65 13.92 55.56 0.77 -20.87 16 18 Si 0.91 20.81 24.48 -169.99 -4.16 16.65 16 19 H -0.27 -5.90 6.70 56.52 0.38 -5.52 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.24 -5.71 6.67 56.52 0.38 -5.34 16 22 C 0.51 7.06 7.22 -10.99 -0.08 6.98 16 23 O -0.53 -9.18 15.84 5.55 0.09 -9.09 16 24 N -0.73 -7.06 5.57 -67.08 -0.37 -7.43 16 25 C 0.09 0.70 10.70 59.85 0.64 1.34 16 26 H 0.07 1.40 5.65 -51.93 -0.29 1.10 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.08 7.84 -51.93 -0.41 0.68 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.62 7.43 -51.93 -0.39 0.24 16 31 H 0.40 6.99 5.84 -40.82 -0.24 6.76 16 32 H 0.10 1.74 6.43 -52.48 -0.34 1.40 16 33 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 35 H 0.11 2.45 4.88 -52.48 -0.26 2.19 16 36 H 0.29 6.99 8.29 -40.82 -0.34 6.65 16 37 H 0.40 2.75 8.19 -40.82 -0.33 2.41 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -31.55 323.26 -6.66 -38.21 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.12 Total: 12.33 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.52 Total: -8.38 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.13 Total: -41.79 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.14 Total: -21.89 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.16 Total: 16.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.55 -6.66 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.886 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds