Wall clock time and date at job start Tue Mar 31 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46860 * 2 1 4 4 H 1.09008 * 109.46928 * 304.99786 * 3 2 1 5 5 N 1.46494 * 109.47427 * 64.99699 * 3 2 1 6 6 C 1.34781 * 120.00437 * 274.72754 * 5 3 2 7 7 C 1.50694 * 119.99913 * 180.27273 * 6 5 3 8 8 O 1.21274 * 119.99679 * 0.27038 * 6 5 3 9 9 C 1.50697 * 109.46907 * 185.00254 * 3 2 1 10 10 O 1.21286 * 119.99624 * 239.99619 * 9 3 2 11 11 N 1.34771 * 120.00238 * 60.00076 * 9 3 2 12 12 C 1.39942 * 120.00138 * 174.89844 * 11 9 3 13 13 C 1.39291 * 119.94447 * 325.51999 * 12 11 9 14 14 C 1.38488 * 120.42530 * 179.76126 * 13 12 11 15 15 C 1.37687 * 120.32148 * 0.51389 * 14 13 12 16 16 C 1.40742 * 119.88550 * 359.74584 * 15 14 13 17 17 C 1.41404 * 120.20819 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99580 * 205.16933 * 17 16 15 19 19 C 1.39929 * 120.00460 * 25.16779 * 17 16 15 20 20 N 1.30831 * 120.00012 * 16.79638 * 19 17 16 21 21 Si 1.86798 * 120.00313 * 196.80286 * 19 17 16 22 22 H 1.48498 * 109.47204 * 59.99378 * 21 19 17 23 23 H 1.48496 * 109.47543 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.46675 * 299.99683 * 21 19 17 25 25 C 1.38237 * 119.94594 * 145.79567 * 12 11 9 26 26 H 1.09002 * 109.47267 * 59.99971 * 1 2 3 27 27 H 1.08995 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47166 * 299.99992 * 1 2 3 29 29 H 1.08997 * 109.47166 * 240.00008 * 2 1 3 30 30 H 1.08997 * 109.47050 * 119.99317 * 2 1 3 31 31 H 0.97007 * 119.99639 * 94.99952 * 5 3 2 32 32 H 1.09000 * 109.47241 * 60.00005 * 7 6 5 33 33 H 1.09002 * 109.46958 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47258 * 299.99787 * 7 6 5 35 35 H 0.96998 * 120.00457 * 354.89032 * 11 9 3 36 36 H 1.07995 * 119.78829 * 0.02562 * 13 12 11 37 37 H 1.08001 * 119.83932 * 180.25530 * 14 13 12 38 38 H 1.08000 * 120.05506 * 179.76176 * 15 14 13 39 39 H 0.96998 * 120.00372 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.16439 * 359.95568 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4371 2.6693 1.3650 7 6 0.0408 3.3484 2.6505 8 8 -0.3374 2.6372 0.4323 9 6 3.5419 1.4444 -0.1239 10 8 4.2216 1.9437 0.7477 11 7 4.1297 0.8912 -1.2032 12 6 5.5157 0.9866 -1.3709 13 6 6.1904 2.1293 -0.9473 14 6 7.5625 2.2322 -1.1039 15 6 8.2738 1.2095 -1.6903 16 6 7.6049 0.0511 -2.1281 17 6 8.3288 -1.0036 -2.7308 18 1 7.8326 -1.6784 -3.4127 19 6 9.6878 -1.1730 -2.4437 20 7 10.2129 -0.5901 -1.3967 21 14 10.7524 -2.2314 -3.5553 22 1 10.7434 -1.6702 -4.9301 23 1 12.1440 -2.2492 -3.0375 24 1 10.2160 -3.6160 -3.5823 25 6 6.2123 -0.0508 -1.9620 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.2719 2.1233 1.9977 32 1 0.7352 4.1619 2.8607 33 1 -0.9685 3.7485 2.5539 34 1 0.0693 2.6265 3.4666 35 1 3.5921 0.4269 -1.8637 36 1 5.6404 2.9384 -0.4899 37 1 8.0765 3.1207 -0.7683 38 1 9.3432 1.2959 -1.8138 39 1 11.1550 -0.7072 -1.1979 40 1 5.6896 -0.9356 -2.2942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601628316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:07 Heat of formation + Delta-G solvation = -62.056705 kcal Electronic energy + Delta-G solvation = -22550.274361 eV Core-core repulsion = 19136.312987 eV Total energy + Delta-G solvation = -3413.961374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57420 -39.28185 -37.32916 -35.39001 -34.59567 -33.23897 -32.56175 -29.91760 -29.86637 -28.71814 -26.59023 -25.26929 -22.43785 -21.55819 -20.99913 -20.50471 -19.75780 -17.90281 -17.54365 -16.69701 -15.95725 -15.85648 -15.50384 -15.02688 -14.81560 -14.39517 -14.19753 -13.97459 -13.53743 -13.18005 -12.94241 -12.75773 -12.60555 -12.28868 -12.24053 -12.00968 -11.75019 -11.61561 -11.23864 -11.18305 -11.02361 -10.94028 -10.53755 -10.26111 -10.01773 -9.68209 -9.55370 -9.29390 -9.16541 -8.95996 -7.51539 -7.00149 -6.76278 -4.40305 2.40502 2.51424 2.79046 2.88187 3.05125 3.07302 3.13432 3.28838 3.58995 3.91334 4.57862 4.62931 4.72190 4.80992 4.93731 5.06572 5.17138 5.23872 5.41448 5.62399 5.64097 5.67733 5.83130 5.95533 6.20714 6.24675 6.29355 6.47297 6.65251 6.87652 6.94536 6.99876 7.20961 7.38316 7.52983 7.58982 7.89134 7.98489 8.05731 8.09680 8.24740 8.46113 8.61803 8.85219 8.92119 10.17340 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.003163 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.922836 B = 8849.593585 C = 9381.565345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.127 3.873 4 H 0.114 0.886 5 N -0.711 5.711 6 C 0.513 3.487 7 C -0.174 4.174 8 O -0.545 6.545 9 C 0.503 3.497 10 O -0.520 6.520 11 N -0.659 5.659 12 C 0.151 3.849 13 C -0.226 4.226 14 C -0.095 4.095 15 C -0.166 4.166 16 C 0.123 3.877 17 C -0.465 4.465 18 H 0.077 0.923 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.242 4.242 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.281 0.719 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.954 2.350 4.333 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.131 0.869 5 N -0.365 5.365 6 C 0.300 3.700 7 C -0.233 4.233 8 O -0.423 6.423 9 C 0.289 3.711 10 O -0.395 6.395 11 N -0.303 5.303 12 C 0.059 3.941 13 C -0.247 4.247 14 C -0.114 4.114 15 C -0.186 4.186 16 C 0.119 3.881 17 C -0.494 4.494 18 H 0.095 0.905 19 C -0.141 4.141 20 N -0.419 5.419 21 Si 0.733 3.267 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.264 4.264 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.248 0.752 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.236 0.764 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.825 2.724 4.447 14.776 hybrid contribution 0.688 -0.763 -0.325 1.078 sum -13.137 1.961 4.123 13.908 Atomic orbital electron populations 1.21791 0.94058 1.00922 1.03144 1.21932 0.97630 0.94085 1.03340 1.20876 0.91872 0.95588 0.89826 0.86868 1.45809 1.17202 1.57295 1.16173 1.20749 0.81083 0.77863 0.90291 1.21906 1.04248 1.01865 0.95288 1.90722 1.51196 1.59320 1.41041 1.20502 0.89525 0.78902 0.82197 1.90717 1.64744 1.44586 1.39470 1.43402 1.07777 1.55394 1.23719 1.17420 0.80102 0.95157 1.01400 1.20271 0.94528 0.97742 1.12197 1.20583 0.93294 0.97986 0.99550 1.21388 1.00047 0.93138 1.04015 1.17365 0.90000 0.91903 0.88783 1.19488 0.93770 1.11936 1.24255 0.90470 1.25893 0.98559 0.95470 0.94228 1.69819 1.14429 1.36286 1.21358 0.86359 0.78564 0.80592 0.81136 1.18822 1.20349 1.19046 1.20702 0.95164 0.97422 1.13086 0.91916 0.93117 0.92461 0.90415 0.91023 0.75206 0.89234 0.88946 0.89377 0.76360 0.88271 0.89018 0.86272 0.90782 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.52 37.16 0.32 -1.20 16 2 C -0.13 -1.42 5.55 -26.73 -0.15 -1.57 16 3 C 0.13 1.60 2.67 -69.09 -0.18 1.42 16 4 H 0.11 1.44 7.57 -51.92 -0.39 1.05 16 5 N -0.71 -8.18 4.90 -54.94 -0.27 -8.45 16 6 C 0.51 5.73 6.52 -10.99 -0.07 5.66 16 7 C -0.17 -1.24 10.32 36.00 0.37 -0.86 16 8 O -0.55 -7.78 14.24 5.56 0.08 -7.70 16 9 C 0.50 8.24 6.95 -10.99 -0.08 8.17 16 10 O -0.52 -10.29 13.58 5.55 0.08 -10.21 16 11 N -0.66 -11.22 5.24 -9.91 -0.05 -11.27 16 12 C 0.15 3.31 6.25 -83.76 -0.52 2.79 16 13 C -0.23 -5.29 8.66 -39.10 -0.34 -5.63 16 14 C -0.10 -2.28 10.02 -39.69 -0.40 -2.68 16 15 C -0.17 -4.31 8.69 -38.84 -0.34 -4.65 16 16 C 0.12 3.21 5.57 -106.85 -0.59 2.61 16 17 C -0.46 -12.06 9.05 -37.74 -0.34 -12.40 16 18 H 0.08 1.90 7.90 -52.48 -0.41 1.49 16 19 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 20 N -0.79 -20.39 10.94 55.55 0.61 -19.78 16 21 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 25 C -0.24 -5.72 9.70 -38.68 -0.38 -6.09 16 26 H 0.06 0.71 7.85 -51.93 -0.41 0.31 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.66 5.66 -51.93 -0.29 0.36 16 29 H 0.08 0.76 7.32 -51.93 -0.38 0.38 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.41 4.52 7.79 -40.82 -0.32 4.20 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.40 5.43 8.03 -40.82 -0.33 5.10 16 36 H 0.10 2.28 6.48 -52.49 -0.34 1.94 16 37 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 38 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -30.96 333.30 -7.65 -38.61 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.29 Total: 13.08 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.79 Total: -12.63 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.29 Total: -39.50 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.15 Total: -17.91 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.96 -7.65 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601628316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.443 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds