Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46860 * 2 1 4 4 H 1.09008 * 109.46928 * 304.99786 * 3 2 1 5 5 N 1.46494 * 109.47427 * 64.99699 * 3 2 1 6 6 C 1.34781 * 120.00437 * 274.72754 * 5 3 2 7 7 C 1.50694 * 119.99913 * 180.27273 * 6 5 3 8 8 O 1.21274 * 119.99679 * 0.27038 * 6 5 3 9 9 C 1.50697 * 109.46907 * 185.00254 * 3 2 1 10 10 O 1.21286 * 119.99624 * 239.99619 * 9 3 2 11 11 N 1.34771 * 120.00238 * 60.00076 * 9 3 2 12 12 C 1.39942 * 120.00138 * 174.89844 * 11 9 3 13 13 C 1.39291 * 119.94447 * 325.51999 * 12 11 9 14 14 C 1.38488 * 120.42530 * 179.76126 * 13 12 11 15 15 C 1.37687 * 120.32148 * 0.51389 * 14 13 12 16 16 C 1.40742 * 119.88550 * 359.74584 * 15 14 13 17 17 C 1.41404 * 120.20819 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99580 * 205.16933 * 17 16 15 19 19 C 1.39929 * 120.00460 * 25.16779 * 17 16 15 20 20 N 1.30831 * 120.00012 * 16.79638 * 19 17 16 21 21 Si 1.86798 * 120.00313 * 196.80286 * 19 17 16 22 22 H 1.48498 * 109.47204 * 59.99378 * 21 19 17 23 23 H 1.48496 * 109.47543 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.46675 * 299.99683 * 21 19 17 25 25 C 1.38237 * 119.94594 * 145.79567 * 12 11 9 26 26 H 1.09002 * 109.47267 * 59.99971 * 1 2 3 27 27 H 1.08995 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47166 * 299.99992 * 1 2 3 29 29 H 1.08997 * 109.47166 * 240.00008 * 2 1 3 30 30 H 1.08997 * 109.47050 * 119.99317 * 2 1 3 31 31 H 0.97007 * 119.99639 * 94.99952 * 5 3 2 32 32 H 1.09000 * 109.47241 * 60.00005 * 7 6 5 33 33 H 1.09002 * 109.46958 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47258 * 299.99787 * 7 6 5 35 35 H 0.96998 * 120.00457 * 354.89032 * 11 9 3 36 36 H 1.07995 * 119.78829 * 0.02562 * 13 12 11 37 37 H 1.08001 * 119.83932 * 180.25530 * 14 13 12 38 38 H 1.08000 * 120.05506 * 179.76176 * 15 14 13 39 39 H 0.96998 * 120.00372 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.16439 * 359.95568 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4371 2.6693 1.3650 7 6 0.0408 3.3484 2.6505 8 8 -0.3374 2.6372 0.4323 9 6 3.5419 1.4444 -0.1239 10 8 4.2216 1.9437 0.7477 11 7 4.1297 0.8912 -1.2032 12 6 5.5157 0.9866 -1.3709 13 6 6.1904 2.1293 -0.9473 14 6 7.5625 2.2322 -1.1039 15 6 8.2738 1.2095 -1.6903 16 6 7.6049 0.0511 -2.1281 17 6 8.3288 -1.0036 -2.7308 18 1 7.8326 -1.6784 -3.4127 19 6 9.6878 -1.1730 -2.4437 20 7 10.2129 -0.5901 -1.3967 21 14 10.7524 -2.2314 -3.5553 22 1 10.7434 -1.6702 -4.9301 23 1 12.1440 -2.2492 -3.0375 24 1 10.2160 -3.6160 -3.5823 25 6 6.2123 -0.0508 -1.9620 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.2719 2.1233 1.9977 32 1 0.7352 4.1619 2.8607 33 1 -0.9685 3.7485 2.5539 34 1 0.0693 2.6265 3.4666 35 1 3.5921 0.4269 -1.8637 36 1 5.6404 2.9384 -0.4899 37 1 8.0765 3.1207 -0.7683 38 1 9.3432 1.2959 -1.8138 39 1 11.1550 -0.7072 -1.1979 40 1 5.6896 -0.9356 -2.2942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601628316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = -82.177607 kcal Electronic energy + Delta-G solvation = -22551.146869 eV Core-core repulsion = 19136.312987 eV Total energy + Delta-G solvation = -3414.833882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79791 -40.48355 -39.03328 -36.48364 -36.21934 -34.93081 -33.54825 -31.78284 -30.71984 -30.22430 -27.77615 -27.15426 -23.68214 -22.86850 -22.78354 -21.52502 -21.22676 -19.51142 -18.81666 -17.83855 -17.34532 -17.10516 -16.90233 -16.49488 -16.44445 -15.86416 -15.35850 -14.99087 -14.92901 -14.60206 -14.37629 -14.11379 -13.62813 -13.52814 -13.32399 -13.14292 -13.02010 -12.90837 -12.86192 -12.70964 -12.48801 -12.24740 -11.97001 -11.89706 -11.47637 -11.15519 -11.01862 -10.93348 -10.70656 -10.13984 -9.42866 -8.80410 -8.60829 -6.36147 0.79668 0.97136 1.40438 1.49170 1.52569 1.60561 1.66232 1.86381 2.22042 2.43141 2.75185 3.45257 3.71692 3.80529 3.92228 4.00403 4.32636 4.41722 4.48599 4.57591 4.64117 4.66896 4.80587 4.98437 4.99192 5.01548 5.05697 5.09741 5.12433 5.18300 5.31327 5.34338 5.42040 5.71349 5.81412 6.07107 6.09731 6.25658 6.50197 6.54296 6.68297 6.92417 6.96002 7.15062 7.20760 8.34343 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.003163 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.922836 B = 8849.593585 C = 9381.565345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.139 3.861 4 H 0.116 0.884 5 N -0.711 5.711 6 C 0.509 3.491 7 C -0.167 4.167 8 O -0.578 6.578 9 C 0.507 3.493 10 O -0.553 6.553 11 N -0.652 5.652 12 C 0.162 3.838 13 C -0.238 4.238 14 C -0.098 4.098 15 C -0.194 4.194 16 C 0.095 3.905 17 C -0.496 4.496 18 H 0.082 0.918 19 C 0.034 3.966 20 N -0.826 5.826 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.258 1.258 25 C -0.251 4.251 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.420 0.580 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.288 0.712 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.092 1.619 4.427 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.030 3.970 4 H 0.133 0.867 5 N -0.365 5.365 6 C 0.299 3.701 7 C -0.226 4.226 8 O -0.458 6.458 9 C 0.294 3.706 10 O -0.430 6.430 11 N -0.297 5.297 12 C 0.069 3.931 13 C -0.259 4.259 14 C -0.117 4.117 15 C -0.214 4.214 16 C 0.092 3.908 17 C -0.526 4.526 18 H 0.100 0.900 19 C -0.181 4.181 20 N -0.452 5.452 21 Si 0.804 3.196 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.273 4.273 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.258 0.742 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.006 1.995 4.549 15.806 hybrid contribution 0.952 -0.474 -0.285 1.101 sum -14.053 1.520 4.264 14.765 Atomic orbital electron populations 1.21707 0.93592 1.01610 1.02270 1.21940 0.97833 0.92730 1.04071 1.20785 0.88513 0.97054 0.90679 0.86675 1.45893 1.17568 1.57327 1.15742 1.21470 0.80300 0.77139 0.91198 1.21933 1.04676 1.02401 0.93559 1.90709 1.52001 1.60585 1.42545 1.21154 0.90998 0.77358 0.81097 1.90703 1.65961 1.45767 1.40594 1.43314 1.05994 1.55762 1.24668 1.17422 0.82321 0.93964 0.99370 1.20418 0.94405 0.98471 1.12572 1.20801 0.93870 0.98139 0.98853 1.21325 0.99529 0.94247 1.06327 1.17746 0.91437 0.92244 0.89348 1.19802 0.95066 1.12530 1.25163 0.90007 1.26789 0.99400 0.96633 0.95230 1.69887 1.15114 1.37482 1.22743 0.85226 0.76724 0.78773 0.78833 1.18389 1.19499 1.18219 1.20879 0.94589 0.98469 1.13347 0.92759 0.91601 0.93362 0.89021 0.90996 0.74811 0.87865 0.88509 0.87196 0.74155 0.87928 0.87364 0.87854 0.90133 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.52 71.98 0.61 -1.99 16 2 C -0.13 -2.49 5.55 30.60 0.17 -2.32 16 3 C 0.14 3.27 2.67 44.25 0.12 3.38 16 4 H 0.12 2.75 7.57 -2.38 -0.02 2.73 16 5 N -0.71 -15.26 4.90 -446.11 -2.19 -17.45 16 6 C 0.51 10.56 6.52 87.65 0.57 11.13 16 7 C -0.17 -1.97 10.32 71.23 0.74 -1.24 16 8 O -0.58 -15.81 14.24 -3.01 -0.04 -15.85 16 9 C 0.51 15.93 6.95 87.66 0.61 16.54 16 10 O -0.55 -21.44 13.58 -3.05 -0.04 -21.48 16 11 N -0.65 -21.28 5.24 -303.66 -1.59 -22.87 16 12 C 0.16 7.06 6.25 38.10 0.24 7.29 16 13 C -0.24 -11.09 8.66 22.58 0.20 -10.90 16 14 C -0.10 -4.77 10.02 22.20 0.22 -4.55 16 15 C -0.19 -10.38 8.69 22.75 0.20 -10.19 16 16 C 0.10 5.08 5.57 -21.31 -0.12 4.96 16 17 C -0.50 -26.11 9.05 23.46 0.21 -25.90 16 18 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 19 C 0.03 1.71 5.16 85.25 0.44 2.15 16 20 N -0.83 -43.25 10.94 21.82 0.24 -43.01 16 21 Si 0.98 37.44 29.59 68.60 2.03 39.47 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 23 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 C -0.25 -11.85 9.70 22.85 0.22 -11.63 16 26 H 0.05 1.15 7.85 -2.39 -0.02 1.13 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.02 5.66 -2.39 -0.01 1.01 16 29 H 0.09 1.54 7.32 -2.39 -0.02 1.53 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.41 8.49 7.79 -92.70 -0.72 7.77 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.42 10.50 8.03 -92.71 -0.74 9.76 16 36 H 0.10 4.69 6.48 -2.91 -0.02 4.67 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.10 5.74 6.17 -2.91 -0.02 5.72 16 39 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -67.58 333.30 2.45 -65.13 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.39 Total: 39.31 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.43 Total: -23.25 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -3.54 Total: -83.32 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.08 Total: -37.34 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -67.58 2.45 -65.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601628316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.047 kcal (2) G-P(sol) polarization free energy of solvation -67.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds