Wall clock time and date at job start Tue Mar 31 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46540 * 2 1 4 4 H 1.08997 * 109.47477 * 54.99952 * 3 2 1 5 5 N 1.46499 * 109.47167 * 294.99713 * 3 2 1 6 6 C 1.34779 * 119.99672 * 85.00126 * 5 3 2 7 7 C 1.50704 * 119.99979 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00539 * 0.02562 * 6 5 3 9 9 C 1.50703 * 109.46653 * 175.00234 * 3 2 1 10 10 O 1.21282 * 119.99646 * 120.00080 * 9 3 2 11 11 N 1.34771 * 120.00004 * 299.99561 * 9 3 2 12 12 C 1.39934 * 120.00069 * 174.89271 * 11 9 3 13 13 C 1.39295 * 119.94822 * 325.55134 * 12 11 9 14 14 C 1.38490 * 120.43022 * 179.76146 * 13 12 11 15 15 C 1.37689 * 120.31823 * 0.51487 * 14 13 12 16 16 C 1.40738 * 119.88774 * 359.74561 * 15 14 13 17 17 C 1.41404 * 120.21303 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99279 * 25.12847 * 17 16 15 19 19 C 1.39930 * 120.00483 * 205.12589 * 17 16 15 20 20 N 1.30831 * 119.99814 * 16.79510 * 19 17 16 21 21 Si 1.86794 * 120.00381 * 196.78557 * 19 17 16 22 22 H 1.48502 * 109.46848 * 60.00335 * 21 19 17 23 23 H 1.48495 * 109.47422 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47416 * 300.00722 * 21 19 17 25 25 C 1.38243 * 119.94695 * 145.82877 * 12 11 9 26 26 H 1.09002 * 109.46779 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47118 * 60.00366 * 1 2 3 28 28 H 1.08997 * 109.46774 * 299.99819 * 1 2 3 29 29 H 1.08997 * 109.47118 * 119.99634 * 2 1 3 30 30 H 1.08997 * 109.46774 * 240.00181 * 2 1 3 31 31 H 0.96997 * 120.00722 * 265.00599 * 5 3 2 32 32 H 1.08996 * 109.47365 * 89.99762 * 7 6 5 33 33 H 1.09002 * 109.46933 * 210.00531 * 7 6 5 34 34 H 1.09006 * 109.46941 * 330.00212 * 7 6 5 35 35 H 0.97004 * 120.00122 * 354.88908 * 11 9 3 36 36 H 1.07997 * 119.78215 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.84113 * 180.23127 * 14 13 12 38 38 H 1.07998 * 120.05257 * 179.76162 * 15 14 13 39 39 H 0.97000 * 120.00065 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.16354 * 359.95475 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4350 2.6643 -1.3670 7 6 0.0360 3.3376 -2.6549 8 8 -0.3395 2.6326 -0.4342 9 6 3.5419 1.4444 0.1238 10 8 4.2215 1.9437 -0.7478 11 7 4.1297 0.8913 1.2031 12 6 5.5243 0.7969 1.2688 13 6 6.2614 0.5698 0.1088 14 6 7.6423 0.4796 0.1616 15 6 8.3015 0.6029 1.3641 16 6 7.5697 0.8272 2.5452 17 6 8.2396 0.9555 3.7838 18 1 9.2678 1.2852 3.8099 19 6 7.5706 0.6554 4.9756 20 7 6.4651 -0.0438 4.9470 21 14 8.2558 1.2527 6.6074 22 1 8.3285 2.7360 6.6005 23 1 7.3683 0.8053 7.7106 24 1 9.6160 0.6915 6.8084 25 6 6.1680 0.9234 2.4856 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.2718 2.1232 -1.9978 32 1 -0.4413 2.6108 -3.3121 33 1 -0.6617 4.1471 -2.4407 34 1 0.9227 3.7418 -3.1434 35 1 3.5861 0.5587 1.9344 36 1 5.7528 0.4677 -0.8385 37 1 8.2046 0.3070 -0.7442 38 1 9.3782 0.5280 1.4009 39 1 6.0015 -0.2521 5.7732 40 1 5.5973 1.0958 3.3861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601628317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:08 Heat of formation + Delta-G solvation = -62.390606 kcal Electronic energy + Delta-G solvation = -22746.892523 eV Core-core repulsion = 19332.916670 eV Total energy + Delta-G solvation = -3413.975853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53199 -39.24460 -37.32265 -35.34147 -34.44385 -33.39355 -32.58807 -29.89307 -29.59975 -28.82934 -26.60850 -25.28264 -22.35352 -21.49906 -21.16454 -20.45074 -19.64060 -17.74772 -17.51874 -16.76806 -15.89928 -15.84231 -15.56194 -14.92782 -14.81231 -14.45189 -14.12621 -13.96131 -13.55006 -13.12598 -12.89590 -12.72034 -12.54093 -12.40843 -12.19326 -11.98889 -11.68196 -11.58011 -11.30713 -11.14630 -10.97657 -10.76601 -10.68726 -10.11872 -9.98378 -9.79101 -9.58005 -9.31204 -9.14125 -8.96241 -7.43376 -7.08351 -6.74432 -4.41447 2.42397 2.51238 2.82124 2.94686 3.04367 3.07396 3.13849 3.27954 3.64812 3.90542 4.59264 4.64796 4.76198 4.86599 4.98437 5.06744 5.19297 5.29964 5.46086 5.62724 5.64093 5.72458 5.88376 5.99338 6.20304 6.27235 6.32862 6.56066 6.61464 6.81746 6.98986 7.01288 7.20389 7.41491 7.53983 7.60404 7.86324 7.97632 8.04360 8.12523 8.26051 8.45758 8.64382 8.84459 8.90194 10.14966 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.003676 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.587596 B = 7614.748845 C = 8253.889539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.126 3.874 4 H 0.113 0.887 5 N -0.709 5.709 6 C 0.512 3.488 7 C -0.172 4.172 8 O -0.545 6.545 9 C 0.504 3.496 10 O -0.524 6.524 11 N -0.656 5.656 12 C 0.143 3.857 13 C -0.227 4.227 14 C -0.085 4.085 15 C -0.227 4.227 16 C 0.121 3.879 17 C -0.463 4.463 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.798 5.798 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.180 4.180 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.410 0.590 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.404 0.596 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.280 0.720 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 1.133 -8.428 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.017 3.983 4 H 0.131 0.869 5 N -0.364 5.364 6 C 0.300 3.700 7 C -0.231 4.231 8 O -0.423 6.423 9 C 0.289 3.711 10 O -0.400 6.400 11 N -0.300 5.300 12 C 0.052 3.948 13 C -0.248 4.248 14 C -0.104 4.104 15 C -0.247 4.247 16 C 0.118 3.882 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.424 5.424 21 Si 0.733 3.267 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.202 4.202 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.247 0.753 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.239 0.761 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.330 1.353 -8.243 14.077 hybrid contribution 0.373 0.007 0.835 0.915 sum -10.957 1.360 -7.407 13.296 Atomic orbital electron populations 1.21794 0.94108 1.00886 1.03113 1.21918 0.97537 0.94019 1.03399 1.20871 0.91990 0.95601 0.89792 0.86940 1.45837 1.17000 1.57407 1.16111 1.20749 0.81138 0.77866 0.90294 1.21871 1.03712 1.02190 0.95363 1.90727 1.51255 1.59342 1.40978 1.20493 0.89508 0.78295 0.82771 1.90695 1.64840 1.44256 1.40226 1.43405 1.07020 1.59159 1.20381 1.17596 0.79986 1.01944 0.95314 1.20253 0.93673 1.14723 0.96160 1.20414 0.93580 1.00039 0.96403 1.21050 0.98130 1.12399 0.93160 1.17356 0.91023 0.87503 0.92325 1.19517 0.99370 1.40301 0.90128 0.90354 1.25876 0.94340 0.92462 1.01342 1.69795 1.15498 1.27042 1.30072 0.86366 0.79723 0.80359 0.80269 1.18859 1.20362 1.19014 1.21085 0.95312 1.08912 0.94845 0.93142 0.92525 0.91895 0.90247 0.91140 0.75273 0.88911 0.88847 0.90003 0.76067 0.88199 0.89015 0.88821 0.90906 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.52 37.16 0.32 -1.28 16 2 C -0.13 -1.50 5.56 -26.73 -0.15 -1.65 16 3 C 0.13 1.67 2.66 -69.08 -0.18 1.49 16 4 H 0.11 1.53 7.58 -51.93 -0.39 1.14 16 5 N -0.71 -8.42 4.90 -54.93 -0.27 -8.69 16 6 C 0.51 5.93 6.51 -10.98 -0.07 5.86 16 7 C -0.17 -1.27 10.30 36.01 0.37 -0.89 16 8 O -0.55 -8.07 14.24 5.56 0.08 -7.99 16 9 C 0.50 8.52 6.95 -10.99 -0.08 8.44 16 10 O -0.52 -10.40 13.58 5.56 0.08 -10.32 16 11 N -0.66 -11.90 5.14 -9.91 -0.05 -11.95 16 12 C 0.14 3.26 6.25 -83.76 -0.52 2.73 16 13 C -0.23 -5.23 8.66 -39.10 -0.34 -5.57 16 14 C -0.09 -1.96 10.02 -39.69 -0.40 -2.35 16 15 C -0.23 -5.56 9.79 -38.84 -0.38 -5.94 16 16 C 0.12 3.17 5.57 -106.85 -0.59 2.57 16 17 C -0.46 -12.05 9.05 -37.74 -0.34 -12.39 16 18 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 19 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 20 N -0.80 -19.75 10.94 55.55 0.61 -19.14 16 21 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.18 -4.50 8.60 -38.68 -0.33 -4.83 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.67 5.65 -51.93 -0.29 0.38 16 28 H 0.06 0.76 7.85 -51.93 -0.41 0.36 16 29 H 0.08 0.87 7.54 -51.93 -0.39 0.48 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.41 4.57 7.79 -40.82 -0.32 4.25 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 6.27 8.35 -40.82 -0.34 5.93 16 36 H 0.10 2.24 6.47 -52.49 -0.34 1.90 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 40 H 0.12 3.11 6.17 -52.49 -0.32 2.79 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -30.28 333.72 -7.67 -37.95 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -5.32 Total: 13.88 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.79 Total: -12.04 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.29 Total: -39.79 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.15 Total: -18.31 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.28 -7.67 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601628317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.440 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds