Wall clock time and date at job start Tue Mar 31 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46540 * 2 1 4 4 H 1.08997 * 109.47477 * 54.99952 * 3 2 1 5 5 N 1.46499 * 109.47167 * 294.99713 * 3 2 1 6 6 C 1.34779 * 119.99672 * 85.00126 * 5 3 2 7 7 C 1.50704 * 119.99979 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00539 * 0.02562 * 6 5 3 9 9 C 1.50703 * 109.46653 * 175.00234 * 3 2 1 10 10 O 1.21282 * 119.99646 * 120.00080 * 9 3 2 11 11 N 1.34771 * 120.00004 * 299.99561 * 9 3 2 12 12 C 1.39934 * 120.00069 * 174.89271 * 11 9 3 13 13 C 1.39295 * 119.94822 * 325.55134 * 12 11 9 14 14 C 1.38490 * 120.43022 * 179.76146 * 13 12 11 15 15 C 1.37689 * 120.31823 * 0.51487 * 14 13 12 16 16 C 1.40738 * 119.88774 * 359.74561 * 15 14 13 17 17 C 1.41404 * 120.21303 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99279 * 25.12847 * 17 16 15 19 19 C 1.39930 * 120.00483 * 205.12589 * 17 16 15 20 20 N 1.30831 * 119.99814 * 16.79510 * 19 17 16 21 21 Si 1.86794 * 120.00381 * 196.78557 * 19 17 16 22 22 H 1.48502 * 109.46848 * 60.00335 * 21 19 17 23 23 H 1.48495 * 109.47422 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47416 * 300.00722 * 21 19 17 25 25 C 1.38243 * 119.94695 * 145.82877 * 12 11 9 26 26 H 1.09002 * 109.46779 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47118 * 60.00366 * 1 2 3 28 28 H 1.08997 * 109.46774 * 299.99819 * 1 2 3 29 29 H 1.08997 * 109.47118 * 119.99634 * 2 1 3 30 30 H 1.08997 * 109.46774 * 240.00181 * 2 1 3 31 31 H 0.96997 * 120.00722 * 265.00599 * 5 3 2 32 32 H 1.08996 * 109.47365 * 89.99762 * 7 6 5 33 33 H 1.09002 * 109.46933 * 210.00531 * 7 6 5 34 34 H 1.09006 * 109.46941 * 330.00212 * 7 6 5 35 35 H 0.97004 * 120.00122 * 354.88908 * 11 9 3 36 36 H 1.07997 * 119.78215 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.84113 * 180.23127 * 14 13 12 38 38 H 1.07998 * 120.05257 * 179.76162 * 15 14 13 39 39 H 0.97000 * 120.00065 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.16354 * 359.95475 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4350 2.6643 -1.3670 7 6 0.0360 3.3376 -2.6549 8 8 -0.3395 2.6326 -0.4342 9 6 3.5419 1.4444 0.1238 10 8 4.2215 1.9437 -0.7478 11 7 4.1297 0.8913 1.2031 12 6 5.5243 0.7969 1.2688 13 6 6.2614 0.5698 0.1088 14 6 7.6423 0.4796 0.1616 15 6 8.3015 0.6029 1.3641 16 6 7.5697 0.8272 2.5452 17 6 8.2396 0.9555 3.7838 18 1 9.2678 1.2852 3.8099 19 6 7.5706 0.6554 4.9756 20 7 6.4651 -0.0438 4.9470 21 14 8.2558 1.2527 6.6074 22 1 8.3285 2.7360 6.6005 23 1 7.3683 0.8053 7.7106 24 1 9.6160 0.6915 6.8084 25 6 6.1680 0.9234 2.4856 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.2718 2.1232 -1.9978 32 1 -0.4413 2.6108 -3.3121 33 1 -0.6617 4.1471 -2.4407 34 1 0.9227 3.7418 -3.1434 35 1 3.5861 0.5587 1.9344 36 1 5.7528 0.4677 -0.8385 37 1 8.2046 0.3070 -0.7442 38 1 9.3782 0.5280 1.4009 39 1 6.0015 -0.2521 5.7732 40 1 5.5973 1.0958 3.3861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601628317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:08 Heat of formation + Delta-G solvation = -81.722447 kcal Electronic energy + Delta-G solvation = -22747.730815 eV Core-core repulsion = 19332.916670 eV Total energy + Delta-G solvation = -3414.814144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79331 -40.48393 -39.02029 -36.46522 -36.08371 -35.13677 -33.58327 -31.48966 -30.75344 -30.32933 -27.80590 -27.15019 -23.57761 -23.11216 -22.67247 -21.50399 -21.18214 -19.27562 -18.97716 -17.98655 -17.25572 -17.10242 -16.82616 -16.52102 -16.44347 -15.95396 -15.29040 -15.03399 -14.93341 -14.54784 -14.36975 -14.16328 -13.67506 -13.43946 -13.32597 -13.19626 -13.02624 -12.89154 -12.82699 -12.59990 -12.48849 -12.31977 -11.92062 -11.86159 -11.58348 -11.20361 -10.99394 -10.94133 -10.71913 -10.14768 -9.33443 -8.88165 -8.56029 -6.35818 0.76212 1.04118 1.40293 1.47758 1.51428 1.58030 1.68440 1.85370 2.22019 2.44055 2.75169 3.44512 3.70983 3.79987 3.92897 3.99372 4.33164 4.43995 4.48208 4.55654 4.67520 4.71611 4.79453 4.84077 4.97984 5.03827 5.07485 5.11401 5.14452 5.19247 5.30819 5.35675 5.40671 5.75407 5.82813 6.02085 6.08357 6.31118 6.49702 6.51836 6.70021 6.93530 6.95740 7.13244 7.20867 8.33645 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.003676 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.587596 B = 7614.748845 C = 8253.889539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.138 3.862 4 H 0.110 0.890 5 N -0.709 5.709 6 C 0.508 3.492 7 C -0.164 4.164 8 O -0.581 6.581 9 C 0.508 3.492 10 O -0.551 6.551 11 N -0.653 5.653 12 C 0.150 3.850 13 C -0.236 4.236 14 C -0.084 4.084 15 C -0.248 4.248 16 C 0.093 3.907 17 C -0.500 4.500 18 H 0.076 0.924 19 C 0.039 3.961 20 N -0.820 5.820 21 Si 0.979 3.021 22 H -0.264 1.264 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.202 4.202 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.415 0.585 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.416 0.584 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.289 0.711 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 1.146 -8.928 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.028 3.972 4 H 0.128 0.872 5 N -0.363 5.363 6 C 0.298 3.702 7 C -0.223 4.223 8 O -0.461 6.461 9 C 0.295 3.705 10 O -0.429 6.429 11 N -0.298 5.298 12 C 0.057 3.943 13 C -0.257 4.257 14 C -0.102 4.102 15 C -0.268 4.268 16 C 0.090 3.910 17 C -0.529 4.529 18 H 0.094 0.906 19 C -0.176 4.176 20 N -0.446 5.446 21 Si 0.800 3.200 22 H -0.189 1.189 23 H -0.191 1.191 24 H -0.185 1.185 25 C -0.224 4.224 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.253 0.747 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.254 0.746 36 H 0.126 0.874 37 H 0.139 0.861 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.246 1.358 -8.768 15.122 hybrid contribution 0.607 -0.006 0.901 1.086 sum -11.639 1.352 -7.868 14.114 Atomic orbital electron populations 1.21710 0.93564 1.01610 1.02253 1.21907 0.97795 0.92689 1.03971 1.20749 0.88744 0.97000 0.90671 0.87194 1.45907 1.17417 1.57399 1.15567 1.21523 0.80320 0.77102 0.91262 1.21905 1.04678 1.02450 0.93313 1.90715 1.52118 1.60650 1.42582 1.21095 0.90941 0.76881 0.81548 1.90675 1.65950 1.45219 1.41031 1.43370 1.05476 1.59493 1.21462 1.17649 0.82060 1.00121 0.94507 1.20471 0.94000 1.14751 0.96491 1.20743 0.93876 0.98630 0.96983 1.21229 0.98650 1.13459 0.93465 1.17749 0.91977 0.88090 0.93223 1.19775 0.99782 1.42065 0.91285 0.90617 1.26664 0.94575 0.91991 1.04378 1.69831 1.16248 1.27054 1.31475 0.85291 0.79242 0.79520 0.75903 1.18864 1.19052 1.18518 1.21033 0.95164 1.10847 0.95360 0.91571 0.93116 0.93012 0.89592 0.90683 0.74693 0.86787 0.88398 0.88314 0.74637 0.87396 0.86101 0.88134 0.90050 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.52 71.98 0.61 -2.20 16 2 C -0.12 -2.69 5.56 30.60 0.17 -2.52 16 3 C 0.14 3.49 2.66 44.25 0.12 3.60 16 4 H 0.11 2.91 7.58 -2.39 -0.02 2.90 16 5 N -0.71 -15.79 4.90 -446.08 -2.19 -17.98 16 6 C 0.51 10.97 6.51 87.66 0.57 11.54 16 7 C -0.16 -2.00 10.30 71.24 0.73 -1.27 16 8 O -0.58 -16.63 14.24 -3.03 -0.04 -16.67 16 9 C 0.51 16.77 6.95 87.66 0.61 17.38 16 10 O -0.55 -21.41 13.58 -3.04 -0.04 -21.45 16 11 N -0.65 -23.48 5.14 -303.66 -1.56 -25.04 16 12 C 0.15 6.83 6.25 38.10 0.24 7.07 16 13 C -0.24 -10.77 8.66 22.58 0.20 -10.58 16 14 C -0.08 -3.79 10.02 22.20 0.22 -3.57 16 15 C -0.25 -12.30 9.79 22.75 0.22 -12.08 16 16 C 0.09 4.97 5.57 -21.31 -0.12 4.85 16 17 C -0.50 -26.61 9.05 23.46 0.21 -26.40 16 18 H 0.08 3.90 7.90 -2.91 -0.02 3.88 16 19 C 0.04 1.93 5.16 85.25 0.44 2.37 16 20 N -0.82 -40.94 10.94 21.82 0.24 -40.70 16 21 Si 0.98 37.41 29.59 68.60 2.03 39.44 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 24 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 25 C -0.20 -10.34 8.60 22.85 0.20 -10.14 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.13 5.65 -2.39 -0.01 1.11 16 28 H 0.05 1.20 7.85 -2.39 -0.02 1.19 16 29 H 0.09 1.74 7.54 -2.39 -0.02 1.73 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.42 8.57 7.79 -92.71 -0.72 7.84 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.42 12.78 8.35 -92.71 -0.77 12.00 16 36 H 0.11 4.72 6.47 -2.91 -0.02 4.70 16 37 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 40 H 0.11 5.87 6.17 -2.91 -0.02 5.85 16 Total: -1.00 -65.58 333.72 2.44 -63.14 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.42 Total: 41.21 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 4.42 Total: -21.95 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.51 Total: -83.72 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.08 Total: -38.13 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -65.58 2.44 -63.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601628317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.579 kcal (2) G-P(sol) polarization free energy of solvation -65.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds