Wall clock time and date at job start Tue Mar 31 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 H 1.08999 * 109.47282 * 304.41402 * 3 2 1 5 5 N 1.46496 * 109.47353 * 64.41930 * 3 2 1 6 6 C 1.34780 * 119.99715 * 275.00099 * 5 3 2 7 7 C 1.50702 * 119.99684 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00200 * 359.97438 * 6 5 3 9 9 C 1.50702 * 109.46913 * 184.41733 * 3 2 1 10 10 O 1.21278 * 120.00054 * 261.84221 * 9 3 2 11 11 N 1.34776 * 120.00200 * 81.84660 * 9 3 2 12 12 C 1.37143 * 119.99841 * 5.41832 * 11 9 3 13 13 H 1.08001 * 120.00242 * 24.68433 * 12 11 9 14 14 C 1.38891 * 120.00134 * 204.95765 * 12 11 9 15 15 N 1.31420 * 119.99745 * 10.63834 * 14 12 11 16 16 Si 1.86797 * 119.99991 * 190.63850 * 14 12 11 17 17 H 1.48497 * 109.47447 * 90.00066 * 16 14 12 18 18 H 1.48500 * 109.46990 * 210.00330 * 16 14 12 19 19 H 1.48499 * 109.47262 * 329.99998 * 16 14 12 20 20 C 1.39790 * 120.00360 * 185.41889 * 11 9 3 21 21 C 1.38964 * 120.07560 * 247.56185 * 20 11 9 22 22 C 1.38082 * 119.91629 * 179.80916 * 21 20 11 23 23 C 1.38301 * 120.07994 * 0.44528 * 22 21 20 24 24 C 1.38308 * 120.15693 * 359.78600 * 23 22 21 25 25 C 1.38079 * 120.07561 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47005 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46971 * 300.00640 * 1 2 3 28 28 H 1.09001 * 109.46713 * 60.00193 * 1 2 3 29 29 H 1.08994 * 109.47447 * 239.99660 * 2 1 3 30 30 H 1.09008 * 109.47361 * 119.99712 * 2 1 3 31 31 H 0.96999 * 120.00226 * 94.99997 * 5 3 2 32 32 H 1.08994 * 109.47719 * 59.99546 * 7 6 5 33 33 H 1.09003 * 109.46964 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46962 * 299.99463 * 7 6 5 35 35 H 0.96998 * 119.99961 * 184.97323 * 15 14 12 36 36 H 1.07997 * 120.04142 * 0.02597 * 21 20 11 37 37 H 1.08009 * 119.95750 * 180.21040 * 22 21 20 38 38 H 1.08011 * 119.92286 * 179.76586 * 23 22 21 39 39 H 1.08004 * 119.95886 * 179.97438 * 24 23 22 40 40 H 1.08004 * 120.03944 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6135 1.9787 -0.8478 5 7 1.6405 2.1018 1.2458 6 6 0.4221 2.6690 1.3473 7 6 0.0114 3.3477 2.6287 8 8 -0.3433 2.6342 0.4072 9 6 3.5430 1.4439 -0.1094 10 8 4.2235 1.5667 0.8869 11 7 4.1311 1.3087 -1.3146 12 6 3.3654 1.2816 -2.4520 13 1 2.3913 1.7480 -2.4585 14 6 3.8402 0.6493 -3.5939 15 7 4.9191 -0.0984 -3.5305 16 14 2.9452 0.8618 -5.2197 17 1 3.4997 2.0358 -5.9403 18 1 3.1261 -0.3578 -6.0474 19 1 1.4982 1.0762 -4.9639 20 6 5.5215 1.1961 -1.4052 21 6 6.2659 2.2133 -1.9900 22 6 7.6396 2.1005 -2.0743 23 6 8.2736 0.9726 -1.5858 24 6 7.5354 -0.0439 -1.0074 25 6 6.1618 0.0639 -0.9163 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.2528 2.1300 1.9975 32 1 0.7008 4.1639 2.8447 33 1 -0.9988 3.7432 2.5227 34 1 0.0349 2.6264 3.4455 35 1 5.2921 -0.4812 -4.3399 36 1 5.7711 3.0927 -2.3750 37 1 8.2191 2.8923 -2.5257 38 1 9.3479 0.8853 -1.6564 39 1 8.0338 -0.9235 -0.6273 40 1 5.5859 -0.7304 -0.4649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602252578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:10 Heat of formation + Delta-G solvation = -40.741731 kcal Electronic energy + Delta-G solvation = -23928.199619 eV Core-core repulsion = 20515.162532 eV Total energy + Delta-G solvation = -3413.037087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02796 -39.00379 -37.38578 -34.99290 -34.61575 -32.21112 -31.72678 -29.93952 -29.51126 -29.05037 -26.30551 -25.01201 -22.10672 -21.60857 -21.15884 -19.99316 -19.35474 -18.01210 -17.04413 -15.86713 -15.57029 -15.44218 -15.35502 -14.79936 -14.44865 -14.26381 -13.66917 -13.50856 -13.34228 -12.96520 -12.83698 -12.48185 -12.40681 -12.10358 -11.87840 -11.65048 -11.50164 -11.33416 -11.17035 -11.02623 -10.94589 -10.61463 -10.41166 -10.30408 -10.28135 -9.53319 -9.44394 -8.85786 -8.50305 -8.30707 -7.91650 -7.52633 -6.32606 -4.19318 2.39280 2.44701 2.93967 3.06371 3.17867 3.19754 3.45835 3.63806 4.01586 4.54107 4.76339 5.03531 5.07874 5.36559 5.43827 5.57576 5.62524 5.67615 5.75212 5.84870 5.88443 5.96544 6.06017 6.17293 6.33940 6.37677 6.47935 6.51055 6.57592 6.73673 6.85635 6.92344 6.98306 7.26025 7.30305 7.40531 7.54487 7.68121 7.91803 7.94055 8.30316 8.57536 8.88793 9.20511 9.61446 10.53666 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.006511 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.733354 B = 4299.304728 C = 5461.244502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.145 3.855 4 H 0.108 0.892 5 N -0.711 5.711 6 C 0.507 3.493 7 C -0.173 4.173 8 O -0.547 6.547 9 C 0.464 3.536 10 O -0.593 6.593 11 N -0.400 5.400 12 C -0.356 4.356 13 H 0.103 0.897 14 C 0.050 3.950 15 N -0.845 5.845 16 Si 0.918 3.082 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.266 1.266 20 C 0.236 3.764 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.150 4.150 24 C -0.118 4.118 25 C -0.080 4.080 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.406 0.594 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.273 0.727 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 1.863 5.992 6.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.037 3.963 4 H 0.126 0.874 5 N -0.364 5.364 6 C 0.294 3.706 7 C -0.232 4.232 8 O -0.426 6.426 9 C 0.254 3.746 10 O -0.478 6.478 11 N -0.114 5.114 12 C -0.482 4.482 13 H 0.120 0.880 14 C -0.158 4.158 15 N -0.479 5.479 16 Si 0.743 3.257 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.190 1.190 20 C 0.145 3.855 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.168 4.168 24 C -0.137 4.137 25 C -0.100 4.100 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.242 0.758 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.216 1.709 5.658 6.313 hybrid contribution 0.010 -0.017 -0.823 0.823 sum -2.206 1.692 4.836 5.578 Atomic orbital electron populations 1.21768 0.95076 1.00051 1.02569 1.21704 0.96268 0.94823 1.03072 1.20676 0.92770 0.94996 0.87852 0.87405 1.45949 1.16663 1.56832 1.16954 1.20653 0.81513 0.78400 0.90080 1.21898 1.03826 1.01704 0.95801 1.90714 1.51945 1.59519 1.40388 1.20208 0.89370 0.82065 0.82984 1.90554 1.65194 1.55853 1.36228 1.41213 1.02993 1.61725 1.05480 1.19623 1.02794 1.36691 0.89109 0.87988 1.25304 0.96791 0.93672 1.00065 1.69900 1.20869 1.27798 1.29320 0.86056 0.80076 0.77996 0.81538 1.20147 1.20708 1.19012 1.17219 0.82939 0.92101 0.93272 1.20925 0.93449 0.98536 1.01263 1.20681 0.94093 0.97849 1.01254 1.20739 0.98452 0.95229 1.02381 1.20690 0.93756 0.98322 1.00927 1.20753 0.93891 0.95847 0.99492 0.93879 0.93130 0.92057 0.89422 0.92372 0.75819 0.89618 0.89286 0.89709 0.91600 0.87299 0.87559 0.87728 0.87532 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.50 37.16 0.32 -1.99 16 2 C -0.12 -2.20 5.56 -26.73 -0.15 -2.35 16 3 C 0.14 2.85 1.98 -69.08 -0.14 2.71 16 4 H 0.11 2.30 5.75 -51.93 -0.30 2.00 16 5 N -0.71 -11.90 4.99 -54.93 -0.27 -12.17 16 6 C 0.51 7.93 6.48 -10.98 -0.07 7.86 16 7 C -0.17 -1.81 10.32 36.01 0.37 -1.43 16 8 O -0.55 -10.44 14.22 5.56 0.08 -10.36 16 9 C 0.46 10.62 6.72 -10.98 -0.07 10.54 16 10 O -0.59 -14.40 15.72 5.56 0.09 -14.32 16 11 N -0.40 -9.66 2.68 -58.98 -0.16 -9.82 16 12 C -0.36 -8.63 8.42 -14.93 -0.13 -8.76 16 13 H 0.10 2.41 6.10 -52.49 -0.32 2.09 16 14 C 0.05 1.22 5.22 -17.49 -0.09 1.13 16 15 N -0.84 -21.29 10.80 55.49 0.60 -20.69 16 16 Si 0.92 19.22 29.57 -169.99 -5.03 14.19 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 C 0.24 5.68 2.54 -83.70 -0.21 5.47 16 21 C -0.12 -2.76 9.62 -39.37 -0.38 -3.14 16 22 C -0.12 -2.37 10.04 -39.62 -0.40 -2.77 16 23 C -0.15 -2.82 10.04 -39.53 -0.40 -3.22 16 24 C -0.12 -2.37 10.04 -39.61 -0.40 -2.77 16 25 C -0.08 -1.85 8.80 -39.38 -0.35 -2.20 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.84 5.66 -51.93 -0.29 0.55 16 28 H 0.06 1.10 7.81 -51.93 -0.41 0.70 16 29 H 0.09 1.75 7.73 -51.93 -0.40 1.35 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.41 6.37 7.75 -40.82 -0.32 6.05 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 36 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 37 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 40 H 0.10 2.45 8.06 -52.48 -0.42 2.03 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -28.94 333.69 -7.15 -36.10 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.40 Total: 12.95 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.09 Total: -0.91 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.17 Total: -42.69 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.17 Total: -24.68 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.94 -7.15 -36.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602252578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.646 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds