Wall clock time and date at job start Tue Mar 31 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 H 1.08999 * 109.47282 * 304.41402 * 3 2 1 5 5 N 1.46496 * 109.47353 * 64.41930 * 3 2 1 6 6 C 1.34780 * 119.99715 * 275.00099 * 5 3 2 7 7 C 1.50702 * 119.99684 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00200 * 359.97438 * 6 5 3 9 9 C 1.50702 * 109.46913 * 184.41733 * 3 2 1 10 10 O 1.21278 * 120.00054 * 261.84221 * 9 3 2 11 11 N 1.34776 * 120.00200 * 81.84660 * 9 3 2 12 12 C 1.37143 * 119.99841 * 5.41832 * 11 9 3 13 13 H 1.08001 * 120.00242 * 24.68433 * 12 11 9 14 14 C 1.38891 * 120.00134 * 204.95765 * 12 11 9 15 15 N 1.31420 * 119.99745 * 10.63834 * 14 12 11 16 16 Si 1.86797 * 119.99991 * 190.63850 * 14 12 11 17 17 H 1.48497 * 109.47447 * 90.00066 * 16 14 12 18 18 H 1.48500 * 109.46990 * 210.00330 * 16 14 12 19 19 H 1.48499 * 109.47262 * 329.99998 * 16 14 12 20 20 C 1.39790 * 120.00360 * 185.41889 * 11 9 3 21 21 C 1.38964 * 120.07560 * 247.56185 * 20 11 9 22 22 C 1.38082 * 119.91629 * 179.80916 * 21 20 11 23 23 C 1.38301 * 120.07994 * 0.44528 * 22 21 20 24 24 C 1.38308 * 120.15693 * 359.78600 * 23 22 21 25 25 C 1.38079 * 120.07561 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47005 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46971 * 300.00640 * 1 2 3 28 28 H 1.09001 * 109.46713 * 60.00193 * 1 2 3 29 29 H 1.08994 * 109.47447 * 239.99660 * 2 1 3 30 30 H 1.09008 * 109.47361 * 119.99712 * 2 1 3 31 31 H 0.96999 * 120.00226 * 94.99997 * 5 3 2 32 32 H 1.08994 * 109.47719 * 59.99546 * 7 6 5 33 33 H 1.09003 * 109.46964 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46962 * 299.99463 * 7 6 5 35 35 H 0.96998 * 119.99961 * 184.97323 * 15 14 12 36 36 H 1.07997 * 120.04142 * 0.02597 * 21 20 11 37 37 H 1.08009 * 119.95750 * 180.21040 * 22 21 20 38 38 H 1.08011 * 119.92286 * 179.76586 * 23 22 21 39 39 H 1.08004 * 119.95886 * 179.97438 * 24 23 22 40 40 H 1.08004 * 120.03944 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6135 1.9787 -0.8478 5 7 1.6405 2.1018 1.2458 6 6 0.4221 2.6690 1.3473 7 6 0.0114 3.3477 2.6287 8 8 -0.3433 2.6342 0.4072 9 6 3.5430 1.4439 -0.1094 10 8 4.2235 1.5667 0.8869 11 7 4.1311 1.3087 -1.3146 12 6 3.3654 1.2816 -2.4520 13 1 2.3913 1.7480 -2.4585 14 6 3.8402 0.6493 -3.5939 15 7 4.9191 -0.0984 -3.5305 16 14 2.9452 0.8618 -5.2197 17 1 3.4997 2.0358 -5.9403 18 1 3.1261 -0.3578 -6.0474 19 1 1.4982 1.0762 -4.9639 20 6 5.5215 1.1961 -1.4052 21 6 6.2659 2.2133 -1.9900 22 6 7.6396 2.1005 -2.0743 23 6 8.2736 0.9726 -1.5858 24 6 7.5354 -0.0439 -1.0074 25 6 6.1618 0.0639 -0.9163 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.2528 2.1300 1.9975 32 1 0.7008 4.1639 2.8447 33 1 -0.9988 3.7432 2.5227 34 1 0.0349 2.6264 3.4455 35 1 5.2921 -0.4812 -4.3399 36 1 5.7711 3.0927 -2.3750 37 1 8.2191 2.8923 -2.5257 38 1 9.3479 0.8853 -1.6564 39 1 8.0338 -0.9235 -0.6273 40 1 5.5859 -0.7304 -0.4649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602252578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:10 Heat of formation + Delta-G solvation = -57.895233 kcal Electronic energy + Delta-G solvation = -23928.943451 eV Core-core repulsion = 20515.162532 eV Total energy + Delta-G solvation = -3413.780919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64569 -40.49846 -39.02054 -36.72455 -36.19450 -33.72724 -33.43910 -31.57390 -30.89630 -30.39168 -27.80927 -26.84496 -23.71768 -23.24347 -22.64189 -21.39741 -21.11336 -19.68826 -18.55370 -17.39675 -17.13605 -17.12507 -16.76227 -16.43403 -16.14168 -15.94968 -15.14954 -14.95343 -14.88276 -14.58547 -14.24412 -14.09366 -13.68691 -13.35334 -13.29325 -13.27809 -12.97990 -12.92975 -12.76815 -12.67235 -12.42758 -12.26920 -12.05072 -11.95923 -11.82825 -11.24062 -10.85320 -10.58117 -10.12193 -9.98952 -9.56721 -9.26385 -8.15129 -6.09177 0.75100 0.79557 1.35797 1.44086 1.53204 1.68324 1.81820 2.11259 2.32709 2.89345 3.01759 3.28257 3.89382 4.01733 4.09421 4.11181 4.23561 4.29094 4.40449 4.49010 4.55836 4.64354 4.69531 4.75846 4.88193 4.91136 5.01997 5.05829 5.08501 5.16755 5.33224 5.37070 5.41751 5.48386 5.65114 5.78101 5.81925 5.99312 6.23035 6.51618 6.64192 7.01850 7.28983 7.40391 7.79356 8.67957 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.006511 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.733354 B = 4299.304728 C = 5461.244502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.154 3.846 4 H 0.087 0.913 5 N -0.709 5.709 6 C 0.502 3.498 7 C -0.161 4.161 8 O -0.585 6.585 9 C 0.457 3.543 10 O -0.613 6.613 11 N -0.409 5.409 12 C -0.366 4.366 13 H 0.100 0.900 14 C 0.016 3.984 15 N -0.865 5.865 16 Si 0.975 3.025 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.263 1.263 20 C 0.208 3.792 21 C -0.147 4.147 22 C -0.116 4.116 23 C -0.143 4.143 24 C -0.117 4.117 25 C -0.107 4.107 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.412 0.588 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 2.145 6.486 6.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.046 3.954 4 H 0.105 0.895 5 N -0.363 5.363 6 C 0.291 3.709 7 C -0.220 4.220 8 O -0.466 6.466 9 C 0.247 3.753 10 O -0.500 6.500 11 N -0.124 5.124 12 C -0.492 4.492 13 H 0.118 0.882 14 C -0.190 4.190 15 N -0.499 5.499 16 Si 0.799 3.201 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.187 1.187 20 C 0.117 3.883 21 C -0.167 4.167 22 C -0.135 4.135 23 C -0.161 4.161 24 C -0.136 4.136 25 C -0.126 4.126 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.249 0.751 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.642 2.001 6.176 6.696 hybrid contribution -0.092 -0.096 -0.933 0.942 sum -1.734 1.905 5.243 5.842 Atomic orbital electron populations 1.21652 0.93471 1.01219 1.01904 1.21619 0.97460 0.93779 1.02247 1.20411 0.90457 0.95779 0.88801 0.89467 1.45965 1.17451 1.56958 1.15907 1.21658 0.80335 0.77468 0.91417 1.21915 1.04548 1.02345 0.93219 1.90700 1.52779 1.60826 1.42245 1.20740 0.90636 0.81378 0.82535 1.90510 1.66037 1.56789 1.36652 1.41404 1.03541 1.61664 1.05769 1.19766 1.02952 1.36899 0.89621 0.88246 1.25971 0.97367 0.93285 1.02418 1.70029 1.21894 1.28358 1.29661 0.85181 0.79111 0.77743 0.78042 1.19978 1.20552 1.18740 1.17529 0.83038 0.93121 0.94600 1.21061 0.95019 0.98253 1.02386 1.21101 0.93070 0.99079 1.00232 1.21213 1.00526 0.93939 1.00408 1.21084 0.92641 0.99764 1.00099 1.20789 0.95396 0.95442 1.00993 0.91725 0.92743 0.93681 0.91600 0.91750 0.75083 0.87689 0.88399 0.87056 0.91854 0.88261 0.84207 0.83417 0.84590 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.50 71.98 0.61 -3.58 16 2 C -0.11 -4.21 5.56 30.59 0.17 -4.04 16 3 C 0.15 6.27 1.98 44.25 0.09 6.36 16 4 H 0.09 3.91 5.75 -2.39 -0.01 3.90 16 5 N -0.71 -23.72 4.99 -446.09 -2.23 -25.95 16 6 C 0.50 15.31 6.48 87.66 0.57 15.88 16 7 C -0.16 -2.95 10.32 71.24 0.74 -2.22 16 8 O -0.58 -22.31 14.22 -3.02 -0.04 -22.35 16 9 C 0.46 21.70 6.72 87.66 0.59 22.29 16 10 O -0.61 -30.66 15.72 -3.02 -0.05 -30.70 16 11 N -0.41 -20.60 2.68 -458.89 -1.23 -21.83 16 12 C -0.37 -18.42 8.42 84.02 0.71 -17.72 16 13 H 0.10 4.92 6.10 -2.91 -0.02 4.90 16 14 C 0.02 0.78 5.22 84.91 0.44 1.22 16 15 N -0.86 -44.38 10.80 21.65 0.23 -44.14 16 16 Si 0.98 39.95 29.57 68.60 2.03 41.98 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 C 0.21 10.28 2.54 38.22 0.10 10.38 16 21 C -0.15 -6.73 9.62 22.41 0.22 -6.51 16 22 C -0.12 -4.38 10.04 22.25 0.22 -4.16 16 23 C -0.14 -4.98 10.04 22.30 0.22 -4.76 16 24 C -0.12 -4.55 10.04 22.25 0.22 -4.32 16 25 C -0.11 -5.01 8.80 22.40 0.20 -4.81 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.77 5.66 -2.39 -0.01 1.75 16 28 H 0.04 1.64 7.81 -2.39 -0.02 1.62 16 29 H 0.07 2.75 7.73 -2.39 -0.02 2.73 16 30 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.41 12.78 7.75 -92.71 -0.72 12.07 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.67 8.12 -2.39 -0.02 1.65 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.27 13.39 8.32 -92.71 -0.77 12.62 16 36 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 38 H 0.15 3.88 8.06 -2.90 -0.02 3.86 16 39 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.08 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -64.53 333.69 4.14 -60.39 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: 0.33 Total: 38.61 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.09 Total: 4.01 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -3.22 Total: -91.92 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.09 Total: -53.06 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -64.53 4.14 -60.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602252578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.493 kcal (2) G-P(sol) polarization free energy of solvation -64.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds