Wall clock time and date at job start Tue Mar 31 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.53003 * 109.46832 * 119.99868 * 2 1 3 5 5 N 1.46498 * 109.47366 * 65.00064 * 4 2 1 6 6 C 1.34776 * 120.00223 * 179.97438 * 5 4 2 7 7 O 1.21582 * 119.99938 * 0.02562 * 6 5 4 8 8 C 1.47599 * 119.99962 * 179.97438 * 6 5 4 9 9 C 1.39773 * 120.05997 * 180.02562 * 8 6 5 10 10 C 1.37631 * 119.93501 * 180.27455 * 9 8 6 11 11 C 1.39256 * 120.06374 * 359.49731 * 10 9 8 12 12 N 1.39094 * 119.94001 * 180.25170 * 11 10 9 13 13 C 1.34774 * 120.00445 * 213.89194 * 12 11 10 14 14 O 1.21729 * 119.99579 * 5.27219 * 13 12 11 15 15 C 1.46191 * 120.00277 * 185.28351 * 13 12 11 16 16 H 1.08002 * 120.00029 * 359.97438 * 15 13 12 17 17 C 1.40124 * 120.00235 * 179.97438 * 15 13 12 18 18 N 1.30644 * 120.00018 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00415 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47120 * 59.99494 * 19 17 15 21 21 H 1.48504 * 109.47638 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47174 * 299.99900 * 19 17 15 23 23 C 1.39258 * 120.11940 * 0.50735 * 11 10 9 24 24 C 1.37622 * 120.06825 * 359.74282 * 23 11 10 25 25 H 1.09001 * 109.47346 * 300.00194 * 1 2 3 26 26 H 1.09001 * 109.47231 * 60.00237 * 1 2 3 27 27 H 1.08999 * 109.46933 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46963 * 239.99824 * 2 1 3 29 29 H 1.08994 * 109.47397 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46827 * 300.00010 * 3 2 1 31 31 H 1.09001 * 109.47121 * 59.99668 * 3 2 1 32 32 H 1.08994 * 109.47157 * 305.00047 * 4 2 1 33 33 H 1.09004 * 109.46715 * 184.99774 * 4 2 1 34 34 H 0.97009 * 119.99826 * 0.02562 * 5 4 2 35 35 H 1.08002 * 120.03105 * 0.02562 * 9 8 6 36 36 H 1.07999 * 119.96686 * 179.72752 * 10 9 8 37 37 H 0.97001 * 119.99822 * 33.88567 * 12 11 10 38 38 H 0.97001 * 120.00119 * 180.02562 * 18 17 15 39 39 H 1.08007 * 119.96263 * 179.72810 * 23 11 10 40 40 H 1.07994 * 120.03514 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 1.9964 -2.9682 2.1908 7 8 2.6279 -2.5502 3.1420 8 6 1.6054 -4.3903 2.1320 9 6 1.9609 -5.2576 3.1688 10 6 1.5999 -6.5844 3.1086 11 6 0.8720 -7.0606 2.0211 12 7 0.5040 -8.4008 1.9654 13 6 0.4438 -9.0344 0.7774 14 8 0.8031 -8.4633 -0.2357 15 6 -0.0533 -10.4073 0.7055 16 1 -0.3719 -10.9141 1.6045 17 6 -0.1165 -11.0659 -0.5297 18 7 0.2685 -10.4528 -1.6172 19 14 -0.7509 -12.8203 -0.6216 20 1 -2.1469 -12.8689 -0.1173 21 1 -0.7179 -13.2856 -2.0314 22 1 0.1070 -13.7012 0.2111 23 6 0.5165 -6.1987 0.9867 24 6 0.8792 -4.8722 1.0391 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 1.1488 -2.4664 0.4316 35 1 2.5219 -4.8879 4.0144 36 1 1.8782 -7.2559 3.9073 37 1 0.2908 -8.8795 2.7817 38 1 0.2244 -10.9085 -2.4724 39 1 -0.0443 -6.5717 0.1424 40 1 0.6036 -4.2043 0.2365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603496190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:22 Heat of formation + Delta-G solvation = -67.245634 kcal Electronic energy + Delta-G solvation = -21987.165870 eV Core-core repulsion = 18572.979488 eV Total energy + Delta-G solvation = -3414.186383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00822 -38.87827 -37.04667 -36.49066 -33.71672 -33.22048 -32.55169 -30.46794 -29.47480 -27.47987 -26.79940 -25.91181 -22.96449 -22.29994 -20.71538 -20.49795 -19.64595 -17.73692 -17.62897 -16.29731 -16.19521 -15.66464 -15.48100 -14.80086 -14.49556 -14.39451 -13.97778 -13.87134 -13.53711 -13.20534 -13.06696 -12.75859 -12.63715 -12.55431 -12.34055 -12.06930 -11.83248 -11.41518 -11.36872 -11.20756 -11.13961 -11.01077 -10.79841 -10.65896 -10.44312 -9.72890 -9.45479 -9.05903 -8.96663 -8.59138 -7.88848 -7.24247 -6.44658 -4.92587 1.33160 1.89296 3.02635 3.08904 3.10523 3.20385 3.27707 3.91229 4.19443 4.44104 4.47352 4.50003 4.59670 4.74347 5.06882 5.18132 5.26311 5.32424 5.40030 5.41278 5.52516 5.53403 5.60161 5.68795 5.74984 5.80193 5.95341 5.98546 6.02320 6.08485 6.45683 6.47609 6.69443 6.79829 6.91624 7.17507 7.22583 7.59951 7.60509 7.90799 8.03856 8.39020 8.74932 9.06352 10.25582 10.45580 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.002918 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.653073 B = 9594.519448 C =10388.546379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.125 3.875 5 N -0.733 5.733 6 C 0.568 3.432 7 O -0.553 6.553 8 C -0.197 4.197 9 C -0.033 4.033 10 C -0.190 4.190 11 C 0.226 3.774 12 N -0.696 5.696 13 C 0.540 3.460 14 O -0.557 6.557 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.086 3.914 18 N -0.757 5.757 19 Si 0.915 3.085 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.141 4.141 24 C -0.062 4.062 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.144 0.856 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 15.041 3.445 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.202 4.202 4 C 0.001 3.999 5 N -0.386 5.386 6 C 0.359 3.641 7 O -0.433 6.433 8 C -0.201 4.201 9 C -0.052 4.052 10 C -0.211 4.211 11 C 0.125 3.875 12 N -0.338 5.338 13 C 0.347 3.653 14 O -0.438 6.438 15 C -0.572 4.572 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.385 5.385 19 Si 0.739 3.261 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.162 4.162 24 C -0.082 4.082 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.236 0.764 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.161 0.839 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.131 15.636 3.116 15.944 hybrid contribution -0.600 -1.324 -0.074 1.455 sum -0.470 14.313 3.042 14.640 Atomic orbital electron populations 1.21880 0.94614 1.02178 1.02066 1.21377 0.96583 0.96912 0.98062 1.21754 1.01241 0.95016 1.02171 1.21382 0.99981 0.80616 0.97889 1.45942 1.58802 1.09558 1.24272 1.18327 0.78304 0.85885 0.81628 1.90716 1.40843 1.78111 1.33584 1.19538 1.08824 0.92921 0.98831 1.20834 0.95700 0.91963 0.96734 1.20875 1.03181 0.96199 1.00881 1.18210 0.90206 0.85462 0.93649 1.44250 1.69774 1.07706 1.12038 1.18430 0.79002 0.87463 0.80422 1.90646 1.51671 1.68034 1.33485 1.20839 1.44670 0.97003 0.94690 0.90890 1.25757 0.93291 0.99528 0.95008 1.69966 1.32893 1.36704 0.98950 0.86308 0.79994 0.81833 0.78003 1.19060 1.20337 1.19064 1.21255 1.02703 0.91702 1.00536 1.21012 0.95915 0.95469 0.95788 0.92402 0.92366 0.92411 0.90412 0.92351 0.92189 0.92362 0.91579 0.91617 0.76399 0.85389 0.85776 0.77003 0.91536 0.83852 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.07 37.16 0.34 -0.78 16 2 C -0.11 -0.86 2.96 -90.62 -0.27 -1.13 16 3 C -0.14 -0.95 9.19 37.16 0.34 -0.61 16 4 C 0.13 1.31 5.06 -4.04 -0.02 1.29 16 5 N -0.73 -9.00 5.23 -61.33 -0.32 -9.32 16 6 C 0.57 9.07 7.76 -12.44 -0.10 8.97 16 7 O -0.55 -10.34 16.34 5.29 0.09 -10.26 16 8 C -0.20 -3.26 5.88 -104.93 -0.62 -3.87 16 9 C -0.03 -0.54 9.58 -39.23 -0.38 -0.92 16 10 C -0.19 -3.23 9.94 -39.42 -0.39 -3.62 16 11 C 0.23 4.50 6.27 -83.81 -0.53 3.98 16 12 N -0.70 -14.83 5.30 -11.19 -0.06 -14.89 16 13 C 0.54 14.28 7.46 -13.07 -0.10 14.19 16 14 O -0.56 -16.59 12.69 5.16 0.07 -16.53 16 15 C -0.54 -14.05 9.54 -35.68 -0.34 -14.39 16 16 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 17 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 18 N -0.76 -21.23 11.83 55.55 0.66 -20.58 16 19 Si 0.91 18.85 29.56 -169.99 -5.02 13.82 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 C -0.14 -2.81 8.62 -39.43 -0.34 -3.15 16 24 C -0.06 -1.02 9.53 -39.23 -0.37 -1.40 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.45 7.18 -51.93 -0.37 0.08 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.40 4.20 5.67 -40.82 -0.23 3.96 16 35 H 0.13 1.98 7.64 -52.49 -0.40 1.58 16 36 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.40 7.13 8.79 -40.82 -0.36 6.78 16 38 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 39 H 0.14 3.23 6.41 -52.48 -0.34 2.90 16 40 H 0.12 1.53 6.39 -52.49 -0.34 1.20 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -32.90 340.06 -7.72 -40.62 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.39 Total: 11.31 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.86 Total: 0.69 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.28 Total: -44.79 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: 0.15 Total: -26.78 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.90 -7.72 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603496190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.624 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds