Wall clock time and date at job start Tue Mar 31 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.53003 * 109.46832 * 119.99868 * 2 1 3 5 5 N 1.46498 * 109.47366 * 65.00064 * 4 2 1 6 6 C 1.34776 * 120.00223 * 179.97438 * 5 4 2 7 7 O 1.21582 * 119.99938 * 0.02562 * 6 5 4 8 8 C 1.47599 * 119.99962 * 179.97438 * 6 5 4 9 9 C 1.39773 * 120.05997 * 180.02562 * 8 6 5 10 10 C 1.37631 * 119.93501 * 180.27455 * 9 8 6 11 11 C 1.39256 * 120.06374 * 359.49731 * 10 9 8 12 12 N 1.39094 * 119.94001 * 180.25170 * 11 10 9 13 13 C 1.34774 * 120.00445 * 213.89194 * 12 11 10 14 14 O 1.21729 * 119.99579 * 5.27219 * 13 12 11 15 15 C 1.46191 * 120.00277 * 185.28351 * 13 12 11 16 16 H 1.08002 * 120.00029 * 359.97438 * 15 13 12 17 17 C 1.40124 * 120.00235 * 179.97438 * 15 13 12 18 18 N 1.30644 * 120.00018 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 120.00415 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47120 * 59.99494 * 19 17 15 21 21 H 1.48504 * 109.47638 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47174 * 299.99900 * 19 17 15 23 23 C 1.39258 * 120.11940 * 0.50735 * 11 10 9 24 24 C 1.37622 * 120.06825 * 359.74282 * 23 11 10 25 25 H 1.09001 * 109.47346 * 300.00194 * 1 2 3 26 26 H 1.09001 * 109.47231 * 60.00237 * 1 2 3 27 27 H 1.08999 * 109.46933 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46963 * 239.99824 * 2 1 3 29 29 H 1.08994 * 109.47397 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46827 * 300.00010 * 3 2 1 31 31 H 1.09001 * 109.47121 * 59.99668 * 3 2 1 32 32 H 1.08994 * 109.47157 * 305.00047 * 4 2 1 33 33 H 1.09004 * 109.46715 * 184.99774 * 4 2 1 34 34 H 0.97009 * 119.99826 * 0.02562 * 5 4 2 35 35 H 1.08002 * 120.03105 * 0.02562 * 9 8 6 36 36 H 1.07999 * 119.96686 * 179.72752 * 10 9 8 37 37 H 0.97001 * 119.99822 * 33.88567 * 12 11 10 38 38 H 0.97001 * 120.00119 * 180.02562 * 18 17 15 39 39 H 1.08007 * 119.96263 * 179.72810 * 23 11 10 40 40 H 1.07994 * 120.03514 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 1.9964 -2.9682 2.1908 7 8 2.6279 -2.5502 3.1420 8 6 1.6054 -4.3903 2.1320 9 6 1.9609 -5.2576 3.1688 10 6 1.5999 -6.5844 3.1086 11 6 0.8720 -7.0606 2.0211 12 7 0.5040 -8.4008 1.9654 13 6 0.4438 -9.0344 0.7774 14 8 0.8031 -8.4633 -0.2357 15 6 -0.0533 -10.4073 0.7055 16 1 -0.3719 -10.9141 1.6045 17 6 -0.1165 -11.0659 -0.5297 18 7 0.2685 -10.4528 -1.6172 19 14 -0.7509 -12.8203 -0.6216 20 1 -2.1469 -12.8689 -0.1173 21 1 -0.7179 -13.2856 -2.0314 22 1 0.1070 -13.7012 0.2111 23 6 0.5165 -6.1987 0.9867 24 6 0.8792 -4.8722 1.0391 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 1.1488 -2.4664 0.4316 35 1 2.5219 -4.8879 4.0144 36 1 1.8782 -7.2559 3.9073 37 1 0.2908 -8.8795 2.7817 38 1 0.2244 -10.9085 -2.4724 39 1 -0.0443 -6.5717 0.1424 40 1 0.6036 -4.2043 0.2365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603496190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:22 Heat of formation + Delta-G solvation = -89.413331 kcal Electronic energy + Delta-G solvation = -21988.127134 eV Core-core repulsion = 18572.979488 eV Total energy + Delta-G solvation = -3415.147646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36066 -40.40043 -38.55238 -37.56721 -35.39994 -34.60123 -34.24724 -31.87206 -30.99046 -28.52074 -28.04674 -27.08076 -24.41369 -23.74298 -22.10001 -21.50580 -21.04138 -19.51072 -18.89818 -17.86900 -17.62588 -17.21242 -16.56514 -16.11329 -15.94474 -15.63693 -15.38934 -15.05777 -14.80240 -14.57387 -14.33953 -14.22488 -13.88764 -13.56729 -13.49982 -13.24753 -13.11952 -12.91261 -12.76319 -12.72654 -12.16620 -12.08115 -12.03968 -11.85928 -11.64060 -11.12554 -11.04650 -10.87706 -10.14338 -10.09113 -9.81970 -8.86575 -8.38693 -6.96462 -0.08731 0.47807 1.41031 1.42318 1.55513 1.82672 2.18755 2.20722 2.39108 2.83233 2.96196 3.54832 3.72989 3.83986 3.90435 3.95187 4.02096 4.12498 4.38643 4.53888 4.58738 4.66451 4.68025 4.77446 4.84508 4.98260 5.03965 5.04807 5.22523 5.24489 5.27567 5.32871 5.37066 5.40331 5.42104 5.50405 5.72907 5.78816 6.13126 6.29073 6.48735 6.76461 7.17532 7.27044 8.30593 8.54125 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.002918 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.653073 B = 9594.519448 C =10388.546379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.143 4.143 4 C 0.123 3.877 5 N -0.718 5.718 6 C 0.568 3.432 7 O -0.582 6.582 8 C -0.192 4.192 9 C -0.035 4.035 10 C -0.175 4.175 11 C 0.196 3.804 12 N -0.690 5.690 13 C 0.528 3.472 14 O -0.602 6.602 15 C -0.563 4.563 16 H 0.094 0.906 17 C 0.031 3.969 18 N -0.810 5.810 19 Si 1.000 3.000 20 H -0.254 1.254 21 H -0.275 1.275 22 H -0.254 1.254 23 C -0.163 4.163 24 C -0.050 4.050 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.410 0.590 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.411 0.589 38 H 0.278 0.722 39 H 0.109 0.891 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 15.412 4.158 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C -0.200 4.200 4 C 0.000 4.000 5 N -0.370 5.370 6 C 0.357 3.643 7 O -0.463 6.463 8 C -0.197 4.197 9 C -0.055 4.055 10 C -0.196 4.196 11 C 0.096 3.904 12 N -0.333 5.333 13 C 0.336 3.664 14 O -0.487 6.487 15 C -0.599 4.599 16 H 0.112 0.888 17 C -0.186 4.186 18 N -0.439 5.439 19 Si 0.819 3.181 20 H -0.178 1.178 21 H -0.199 1.199 22 H -0.178 1.178 23 C -0.184 4.184 24 C -0.070 4.070 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.142 16.054 3.860 16.512 hybrid contribution -0.483 -1.238 -0.247 1.351 sum -0.624 14.816 3.613 15.263 Atomic orbital electron populations 1.21895 0.94215 1.02051 1.02646 1.21346 0.96824 0.97389 0.96654 1.21753 1.01323 0.94111 1.02853 1.21545 0.99750 0.79487 0.99268 1.45908 1.57560 1.10078 1.23436 1.18226 0.78250 0.85798 0.82005 1.90707 1.42329 1.78447 1.34866 1.19768 1.07766 0.93619 0.98511 1.21092 0.95417 0.91747 0.97204 1.21055 1.01550 0.96756 1.00219 1.18452 0.92055 0.84806 0.95086 1.43768 1.69895 1.08451 1.11173 1.18732 0.78577 0.87998 0.81137 1.90603 1.53529 1.69075 1.35476 1.21392 1.45043 0.97432 0.96002 0.88787 1.26976 0.92799 1.04633 0.94194 1.70123 1.34634 1.39237 0.99892 0.85028 0.79740 0.75115 0.78247 1.17760 1.19927 1.17824 1.21115 1.03908 0.93373 0.99998 1.21177 0.94795 0.94446 0.96545 0.92492 0.91188 0.92888 0.89981 0.92277 0.91038 0.92181 0.91951 0.92166 0.75248 0.83844 0.83125 0.75318 0.91147 0.87247 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.07 71.98 0.65 -1.29 16 2 C -0.10 -1.41 2.96 -10.79 -0.03 -1.44 16 3 C -0.14 -1.58 9.19 71.98 0.66 -0.92 16 4 C 0.12 2.38 5.06 86.38 0.44 2.82 16 5 N -0.72 -16.43 5.23 -466.21 -2.44 -18.87 16 6 C 0.57 17.26 7.76 86.71 0.67 17.94 16 7 O -0.58 -21.00 16.34 -3.97 -0.06 -21.06 16 8 C -0.19 -6.12 5.88 -20.06 -0.12 -6.24 16 9 C -0.04 -1.11 9.58 22.50 0.22 -0.89 16 10 C -0.17 -5.73 9.94 22.37 0.22 -5.51 16 11 C 0.20 7.86 6.27 38.48 0.24 8.10 16 12 N -0.69 -29.90 5.30 -307.52 -1.63 -31.53 16 13 C 0.53 28.88 7.46 86.31 0.64 29.52 16 14 O -0.60 -37.57 12.69 -4.44 -0.06 -37.62 16 15 C -0.56 -29.89 9.54 24.79 0.24 -29.65 16 16 H 0.09 4.40 7.85 -2.91 -0.02 4.37 16 17 C 0.03 1.62 5.50 85.33 0.47 2.09 16 18 N -0.81 -46.83 11.83 21.85 0.26 -46.57 16 19 Si 1.00 38.43 29.56 68.60 2.03 40.46 16 20 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 23 C -0.16 -6.67 8.62 22.37 0.19 -6.47 16 24 C -0.05 -1.63 9.53 22.50 0.21 -1.42 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.73 7.18 -2.39 -0.02 0.71 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.41 7.78 5.67 -92.70 -0.53 7.25 16 35 H 0.14 4.14 7.64 -2.91 -0.02 4.12 16 36 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.41 14.77 8.79 -92.71 -0.82 13.95 16 38 H 0.28 14.59 8.29 -92.71 -0.77 13.83 16 39 H 0.11 5.26 6.41 -2.91 -0.02 5.24 16 40 H 0.15 3.68 6.39 -2.91 -0.02 3.66 16 Total: -1.00 -73.51 340.06 2.54 -70.97 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.27 Total: 37.58 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.71 Total: 6.64 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -3.81 Total: -96.96 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -0.12 Total: -58.69 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -73.51 2.54 -70.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603496190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.445 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds