Wall clock time and date at job start Tue Mar 31 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47384 * 2 1 4 4 C 1.53001 * 109.46931 * 119.99858 * 2 1 3 5 5 N 1.46503 * 109.47086 * 173.87001 * 4 2 1 6 6 C 1.46496 * 120.00224 * 275.92990 * 5 4 2 7 7 C 1.50704 * 109.47072 * 262.56837 * 6 5 4 8 8 H 1.08004 * 119.99736 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99838 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00144 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99817 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47122 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47452 * 119.99767 * 11 9 7 14 14 H 1.48502 * 109.47033 * 240.00255 * 11 9 7 15 15 C 1.34783 * 120.00106 * 95.92716 * 5 4 2 16 16 O 1.21728 * 119.99406 * 1.22640 * 15 5 4 17 17 C 1.46485 * 120.00153 * 181.50097 * 15 5 4 18 18 C 1.37789 * 125.85744 * 169.93582 * 17 15 5 19 19 C 1.39930 * 107.68380 * 179.97438 * 18 17 15 20 20 O 1.35124 * 145.13719 * 179.97438 * 19 18 17 21 21 C 1.34384 * 109.62320 * 179.97438 * 20 19 18 22 22 C 1.34461 * 109.44880 * 0.02562 * 21 20 19 23 23 C 1.39134 * 107.41003 * 359.97438 * 19 18 17 24 24 N 1.37112 * 108.10660 * 359.76347 * 23 19 18 25 25 H 0.97001 * 125.74416 * 180.23974 * 24 23 19 26 26 H 1.08997 * 109.47130 * 300.00057 * 1 2 3 27 27 H 1.09000 * 109.46853 * 60.00399 * 1 2 3 28 28 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47263 * 239.99656 * 2 1 3 30 30 H 1.09009 * 109.46925 * 305.92620 * 3 2 1 31 31 H 1.08998 * 109.47344 * 65.91962 * 3 2 1 32 32 H 1.08994 * 109.47457 * 185.92501 * 3 2 1 33 33 H 1.08996 * 109.47359 * 53.86945 * 4 2 1 34 34 H 1.09002 * 109.47459 * 293.86587 * 4 2 1 35 35 H 1.09002 * 109.47078 * 22.56815 * 6 5 4 36 36 H 1.09001 * 109.47049 * 142.56969 * 6 5 4 37 37 H 0.97001 * 119.99526 * 180.02562 * 10 9 7 38 38 H 1.07999 * 126.15572 * 359.97185 * 18 17 15 39 39 H 1.07998 * 125.27486 * 179.97438 * 21 20 19 40 40 H 1.07996 * 126.41805 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4976 -0.8503 1.1778 6 6 4.0991 -1.9624 0.4380 7 6 4.4607 -3.0669 1.3974 8 1 4.2627 -2.9516 2.4529 9 6 5.0444 -4.2243 0.9278 10 7 5.2851 -4.3648 -0.3574 11 14 5.4920 -5.5936 2.1171 12 1 5.1205 -5.1914 3.4976 13 1 4.7582 -6.8303 1.7469 14 1 6.9538 -5.8472 2.0524 15 6 4.2852 0.0542 1.7928 16 8 3.7853 0.9656 2.4262 17 6 5.7425 -0.0561 1.6940 18 6 6.6534 0.8941 2.1013 19 6 7.9339 0.3986 1.8316 20 8 9.2591 0.6525 1.9047 21 6 9.9462 -0.3885 1.4046 22 6 9.0862 -1.3381 0.9963 23 6 7.7811 -0.8599 1.2584 24 7 6.4397 -1.1336 1.1826 25 1 6.0464 -1.9460 0.8273 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.5927 1.9861 -0.8322 31 1 1.7659 1.9249 0.9382 32 1 3.1248 1.4443 -0.1061 33 1 1.5898 -1.7123 1.3059 34 1 1.7691 -0.1479 2.1359 35 1 3.3864 -2.3380 -0.2964 36 1 4.9977 -1.6156 -0.0722 37 1 5.6954 -5.1793 -0.6878 38 1 6.4208 1.8494 2.5482 39 1 11.0224 -0.4521 1.3398 40 1 9.3437 -2.2879 0.5515 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750856258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:58 Heat of formation + Delta-G solvation = 28.569944 kcal Electronic energy + Delta-G solvation = -23883.375839 eV Core-core repulsion = 20473.344332 eV Total energy + Delta-G solvation = -3410.031507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.35122 -39.85068 -38.02314 -36.04432 -34.48566 -32.63802 -31.81950 -29.91777 -28.11953 -27.72208 -26.84053 -25.70749 -23.49944 -22.37197 -20.80940 -20.11966 -19.77367 -18.79812 -17.18368 -16.86421 -16.55995 -15.75054 -15.68334 -14.94222 -14.77975 -14.61801 -14.18264 -13.91058 -13.33874 -13.05598 -12.97742 -12.69899 -12.41874 -12.36275 -12.27181 -11.96827 -11.62357 -11.49570 -11.22237 -11.16279 -11.00670 -10.73490 -10.60886 -10.49083 -10.23382 -9.99674 -9.56871 -9.40672 -8.94226 -7.98464 -7.88801 -7.26341 -6.55194 -4.68766 1.63588 2.74930 3.02860 3.12206 3.13205 3.18673 3.27088 3.58420 3.93876 3.99365 4.14507 4.75535 5.12311 5.20047 5.25013 5.28150 5.39427 5.53801 5.79840 5.83887 5.92223 5.96373 6.06669 6.07246 6.13355 6.23020 6.27261 6.31356 6.39414 6.41054 6.58896 6.61022 6.71430 6.77669 6.87292 7.20501 7.38784 7.46334 7.60587 7.70794 8.06698 8.30855 8.46693 8.82077 9.02949 10.47184 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.007620 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.128313 B = 3673.498044 C = 5620.472983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.124 3.876 5 N -0.591 5.591 6 C 0.216 3.784 7 C -0.560 4.560 8 H 0.072 0.928 9 C 0.066 3.934 10 N -0.881 5.881 11 Si 0.899 3.101 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.590 3.410 16 O -0.552 6.552 17 C 0.025 3.975 18 C -0.114 4.114 19 C -0.049 4.049 20 O -0.178 6.178 21 C -0.013 4.013 22 C -0.191 4.191 23 C -0.005 4.005 24 N -0.501 5.501 25 H 0.454 0.546 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.273 0.727 38 H 0.150 0.850 39 H 0.205 0.795 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.879 4.944 -0.624 5.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.195 4.195 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.095 3.905 7 C -0.599 4.599 8 H 0.090 0.910 9 C -0.140 4.140 10 N -0.517 5.517 11 Si 0.725 3.275 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.203 1.203 15 C 0.379 3.621 16 O -0.432 6.432 17 C -0.092 4.092 18 C -0.142 4.142 19 C -0.100 4.100 20 O -0.077 6.077 21 C -0.080 4.080 22 C -0.213 4.213 23 C -0.122 4.122 24 N -0.118 5.118 25 H 0.314 0.686 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.168 0.832 39 H 0.221 0.779 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.651 5.312 -0.428 5.368 hybrid contribution 0.294 -1.663 0.156 1.696 sum 0.945 3.649 -0.272 3.779 Atomic orbital electron populations 1.21748 0.95052 1.01594 1.01519 1.21521 0.95445 0.97061 0.99272 1.21757 1.01060 0.95431 1.01232 1.21463 0.79921 1.00679 0.97875 1.48014 1.06033 1.26644 1.51373 1.19819 0.94746 0.83523 0.92412 1.21695 1.42095 1.00880 0.95221 0.91016 1.25084 0.94920 0.98357 0.95632 1.69933 1.41031 1.28193 1.12526 0.86375 0.78558 0.81295 0.81260 1.19164 1.20233 1.20320 1.16853 0.84087 0.81977 0.79234 1.90751 1.74560 1.34488 1.43431 1.20249 0.92067 0.89372 1.07489 1.19627 0.84793 1.00901 1.08900 1.19349 0.83520 0.96837 1.10312 1.83930 1.15164 1.39963 1.68599 1.23812 0.97409 0.85938 1.00857 1.20566 0.88737 1.02211 1.09745 1.19241 0.87141 0.97415 1.08373 1.43789 1.02618 1.18323 1.47047 0.68611 0.92698 0.92856 0.92662 0.91075 0.93671 0.92239 0.93000 0.90533 0.90144 0.93154 0.94479 0.91723 0.83208 0.77862 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.11 -1.73 3.11 -90.62 -0.28 -2.01 16 3 C -0.14 -2.14 8.09 37.16 0.30 -1.84 16 4 C 0.12 2.18 4.91 -4.04 -0.02 2.16 16 5 N -0.59 -12.18 2.31 -176.67 -0.41 -12.59 16 6 C 0.22 4.86 4.74 -5.19 -0.02 4.84 16 7 C -0.56 -13.62 7.29 -34.44 -0.25 -13.87 16 8 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.07 1.61 5.05 -17.82 -0.09 1.52 16 10 N -0.88 -22.08 13.29 55.43 0.74 -21.34 16 11 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 C 0.59 12.78 6.35 -12.94 -0.08 12.69 16 16 O -0.55 -12.34 15.49 5.16 0.08 -12.26 16 17 C 0.02 0.54 6.61 -81.86 -0.54 0.00 16 18 C -0.11 -2.31 10.60 -39.11 -0.41 -2.72 16 19 C -0.05 -0.98 8.20 -38.62 -0.32 -1.29 16 20 O -0.18 -3.13 10.68 3.18 0.03 -3.10 16 21 C -0.01 -0.19 12.02 29.40 0.35 0.17 16 22 C -0.19 -3.27 10.89 -39.70 -0.43 -3.70 16 23 C -0.01 -0.11 8.11 -83.95 -0.68 -0.79 16 24 N -0.50 -11.12 4.84 -7.04 -0.03 -11.16 16 25 H 0.45 10.57 3.25 -40.82 -0.13 10.44 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 32 H 0.05 0.91 7.04 -51.93 -0.37 0.55 16 33 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 34 H 0.08 1.43 7.23 -51.93 -0.38 1.05 16 35 H 0.05 1.16 8.02 -51.93 -0.42 0.75 16 36 H 0.04 0.89 5.16 -51.93 -0.27 0.62 16 37 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 38 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 39 H 0.20 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -27.32 330.48 -7.10 -34.42 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.32 Total: 12.81 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.14 Total: -6.25 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.29 Total: -45.09 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.11 Total: -15.36 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.32 -7.10 -34.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750856258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.988 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds