Wall clock time and date at job start Tue Mar 31 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47384 * 2 1 4 4 C 1.53001 * 109.46931 * 119.99858 * 2 1 3 5 5 N 1.46503 * 109.47086 * 173.87001 * 4 2 1 6 6 C 1.46496 * 120.00224 * 275.92990 * 5 4 2 7 7 C 1.50704 * 109.47072 * 262.56837 * 6 5 4 8 8 H 1.08004 * 119.99736 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99838 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00144 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99817 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47122 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47452 * 119.99767 * 11 9 7 14 14 H 1.48502 * 109.47033 * 240.00255 * 11 9 7 15 15 C 1.34783 * 120.00106 * 95.92716 * 5 4 2 16 16 O 1.21728 * 119.99406 * 1.22640 * 15 5 4 17 17 C 1.46485 * 120.00153 * 181.50097 * 15 5 4 18 18 C 1.37789 * 125.85744 * 169.93582 * 17 15 5 19 19 C 1.39930 * 107.68380 * 179.97438 * 18 17 15 20 20 O 1.35124 * 145.13719 * 179.97438 * 19 18 17 21 21 C 1.34384 * 109.62320 * 179.97438 * 20 19 18 22 22 C 1.34461 * 109.44880 * 0.02562 * 21 20 19 23 23 C 1.39134 * 107.41003 * 359.97438 * 19 18 17 24 24 N 1.37112 * 108.10660 * 359.76347 * 23 19 18 25 25 H 0.97001 * 125.74416 * 180.23974 * 24 23 19 26 26 H 1.08997 * 109.47130 * 300.00057 * 1 2 3 27 27 H 1.09000 * 109.46853 * 60.00399 * 1 2 3 28 28 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47263 * 239.99656 * 2 1 3 30 30 H 1.09009 * 109.46925 * 305.92620 * 3 2 1 31 31 H 1.08998 * 109.47344 * 65.91962 * 3 2 1 32 32 H 1.08994 * 109.47457 * 185.92501 * 3 2 1 33 33 H 1.08996 * 109.47359 * 53.86945 * 4 2 1 34 34 H 1.09002 * 109.47459 * 293.86587 * 4 2 1 35 35 H 1.09002 * 109.47078 * 22.56815 * 6 5 4 36 36 H 1.09001 * 109.47049 * 142.56969 * 6 5 4 37 37 H 0.97001 * 119.99526 * 180.02562 * 10 9 7 38 38 H 1.07999 * 126.15572 * 359.97185 * 18 17 15 39 39 H 1.07998 * 125.27486 * 179.97438 * 21 20 19 40 40 H 1.07996 * 126.41805 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4976 -0.8503 1.1778 6 6 4.0991 -1.9624 0.4380 7 6 4.4607 -3.0669 1.3974 8 1 4.2627 -2.9516 2.4529 9 6 5.0444 -4.2243 0.9278 10 7 5.2851 -4.3648 -0.3574 11 14 5.4920 -5.5936 2.1171 12 1 5.1205 -5.1914 3.4976 13 1 4.7582 -6.8303 1.7469 14 1 6.9538 -5.8472 2.0524 15 6 4.2852 0.0542 1.7928 16 8 3.7853 0.9656 2.4262 17 6 5.7425 -0.0561 1.6940 18 6 6.6534 0.8941 2.1013 19 6 7.9339 0.3986 1.8316 20 8 9.2591 0.6525 1.9047 21 6 9.9462 -0.3885 1.4046 22 6 9.0862 -1.3381 0.9963 23 6 7.7811 -0.8599 1.2584 24 7 6.4397 -1.1336 1.1826 25 1 6.0464 -1.9460 0.8273 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.5927 1.9861 -0.8322 31 1 1.7659 1.9249 0.9382 32 1 3.1248 1.4443 -0.1061 33 1 1.5898 -1.7123 1.3059 34 1 1.7691 -0.1479 2.1359 35 1 3.3864 -2.3380 -0.2964 36 1 4.9977 -1.6156 -0.0722 37 1 5.6954 -5.1793 -0.6878 38 1 6.4208 1.8494 2.5482 39 1 11.0224 -0.4521 1.3398 40 1 9.3437 -2.2879 0.5515 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750856258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:58 Heat of formation + Delta-G solvation = 14.297877 kcal Electronic energy + Delta-G solvation = -23883.994723 eV Core-core repulsion = 20473.344332 eV Total energy + Delta-G solvation = -3410.650391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.80115 -41.43742 -39.56344 -37.60806 -36.05809 -34.38422 -33.20149 -31.50013 -29.62440 -29.47560 -28.02262 -27.13380 -25.31083 -23.83431 -22.31208 -21.55803 -21.13368 -20.37751 -18.91356 -18.46582 -18.15231 -17.35350 -17.13781 -16.54342 -16.41434 -16.16356 -15.51651 -15.36123 -14.73636 -14.62480 -14.50872 -14.39720 -13.94329 -13.78225 -13.62859 -13.35488 -13.12957 -12.92909 -12.81364 -12.66344 -12.49869 -12.43231 -12.13345 -11.87573 -11.75144 -11.56921 -11.11159 -10.97857 -10.81165 -9.63362 -9.46218 -8.75758 -8.42381 -6.62608 0.13902 1.28167 1.30166 1.35646 1.45017 1.69854 1.79264 2.01064 2.23831 2.33949 2.54123 2.85722 3.63908 3.84285 3.93804 4.03033 4.10447 4.16324 4.40079 4.50774 4.58421 4.65186 4.67011 4.79768 4.81336 4.85901 4.90683 4.96529 5.01318 5.06469 5.11918 5.20602 5.38508 5.44123 5.47105 5.54161 5.63076 5.73864 5.87026 6.26104 6.31516 6.58364 6.64835 7.08048 7.18317 8.59028 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.007620 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.128313 B = 3673.498044 C = 5620.472983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.131 4.131 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.232 3.768 7 C -0.565 4.565 8 H 0.054 0.946 9 C 0.035 3.965 10 N -0.901 5.901 11 Si 0.949 3.051 12 H -0.276 1.276 13 H -0.269 1.269 14 H -0.272 1.272 15 C 0.587 3.413 16 O -0.567 6.567 17 C -0.010 4.010 18 C -0.107 4.107 19 C -0.069 4.069 20 O -0.180 6.180 21 C 0.032 3.968 22 C -0.227 4.227 23 C -0.023 4.023 24 N -0.517 5.517 25 H 0.447 0.553 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.026 0.974 37 H 0.277 0.723 38 H 0.165 0.835 39 H 0.267 0.733 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 4.893 -0.660 5.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.188 4.188 4 C -0.004 4.004 5 N -0.320 5.320 6 C 0.110 3.890 7 C -0.603 4.603 8 H 0.073 0.927 9 C -0.169 4.169 10 N -0.537 5.537 11 Si 0.774 3.226 12 H -0.200 1.200 13 H -0.194 1.194 14 H -0.197 1.197 15 C 0.376 3.624 16 O -0.448 6.448 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.120 4.120 20 O -0.079 6.079 21 C -0.034 4.034 22 C -0.249 4.249 23 C -0.139 4.139 24 N -0.133 5.133 25 H 0.305 0.695 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.182 0.818 39 H 0.282 0.718 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.750 5.276 -0.465 5.578 hybrid contribution 0.094 -1.620 0.159 1.630 sum 1.844 3.656 -0.306 4.106 Atomic orbital electron populations 1.21701 0.92249 1.02472 1.02767 1.21478 0.97680 0.96289 0.97340 1.21692 0.99350 0.95894 1.01887 1.21681 0.78322 1.01180 0.99168 1.48028 1.07204 1.25924 1.50862 1.19510 0.94015 0.83569 0.91917 1.21667 1.42495 1.01676 0.94496 0.92743 1.25608 0.94686 0.99817 0.96754 1.69984 1.41431 1.28832 1.13497 0.85616 0.78544 0.79339 0.79131 1.20042 1.19383 1.19741 1.16949 0.84404 0.81940 0.79102 1.90716 1.74905 1.34994 1.44215 1.20381 0.92311 0.90218 1.09635 1.19848 0.85024 1.00954 1.07682 1.19379 0.84468 0.96831 1.11311 1.83964 1.14037 1.41111 1.68743 1.24994 0.99298 0.83261 0.95892 1.20960 0.87501 1.04161 1.12233 1.19975 0.87588 0.98277 1.08076 1.43726 1.03485 1.18214 1.47885 0.69538 0.91927 0.91116 0.92015 0.92088 0.91280 0.92810 0.95764 0.90293 0.90378 0.94101 0.95648 0.91316 0.81777 0.71752 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.19 71.98 0.66 -2.42 16 2 C -0.11 -3.29 3.11 -10.79 -0.03 -3.32 16 3 C -0.13 -4.06 8.09 71.98 0.58 -3.48 16 4 C 0.12 4.26 4.91 86.38 0.42 4.68 16 5 N -0.59 -25.27 2.31 -831.05 -1.92 -27.19 16 6 C 0.23 10.82 4.74 85.64 0.41 11.23 16 7 C -0.56 -28.15 7.29 25.60 0.19 -27.96 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.04 1.74 5.05 84.65 0.43 2.17 16 10 N -0.90 -45.42 13.29 21.45 0.28 -45.14 16 11 Si 0.95 39.92 29.54 68.60 2.03 41.94 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 15 C 0.59 26.37 6.35 86.39 0.55 26.92 16 16 O -0.57 -26.07 15.49 -4.44 -0.07 -26.13 16 17 C -0.01 -0.47 6.61 40.19 0.27 -0.20 16 18 C -0.11 -4.38 10.60 22.57 0.24 -4.15 16 19 C -0.07 -2.73 8.20 22.90 0.19 -2.54 16 20 O -0.18 -5.90 10.68 -11.55 -0.12 -6.02 16 21 C 0.03 0.81 12.02 66.96 0.80 1.61 16 22 C -0.23 -7.34 10.89 22.20 0.24 -7.10 16 23 C -0.02 -0.95 8.11 39.32 0.32 -0.63 16 24 N -0.52 -23.65 4.84 -176.19 -0.85 -24.50 16 25 H 0.45 21.52 3.25 -92.71 -0.30 21.22 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 32 H 0.02 0.86 7.04 -2.39 -0.02 0.84 16 33 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 34 H 0.08 2.83 7.23 -2.39 -0.02 2.81 16 35 H 0.04 1.96 8.02 -2.39 -0.02 1.94 16 36 H 0.03 1.29 5.16 -2.39 -0.01 1.27 16 37 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 38 H 0.16 6.00 8.06 -2.91 -0.02 5.98 16 39 H 0.27 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.16 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -60.31 330.48 5.37 -54.94 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 0.75 Total: 37.28 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 5.26 Total: -5.18 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -2.48 Total: -96.82 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.19 Total: -32.15 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -60.31 5.37 -54.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750856258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.238 kcal (2) G-P(sol) polarization free energy of solvation -60.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds