Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47529 * 2 1 4 4 C 1.50703 * 109.47395 * 120.00150 * 2 1 3 5 5 N 1.28023 * 119.99700 * 359.97438 * 4 2 1 6 6 N 1.40094 * 120.00042 * 180.02562 * 5 4 2 7 7 C 1.38966 * 120.00019 * 179.97438 * 6 5 4 8 8 C 1.39291 * 119.92847 * 179.97438 * 7 6 5 9 9 C 1.37088 * 120.06817 * 180.26082 * 8 7 6 10 10 C 1.39877 * 119.92985 * 359.51083 * 9 8 7 11 11 C 1.47374 * 120.07153 * 180.21508 * 10 9 8 12 12 O 1.21519 * 120.00230 * 180.29959 * 11 10 9 13 13 O 1.34768 * 120.00080 * 0.29478 * 11 10 9 14 14 C 1.39867 * 119.85961 * 0.50884 * 10 9 8 15 15 C 1.37097 * 119.93209 * 359.73173 * 14 10 9 16 16 C 1.53001 * 109.47240 * 240.00012 * 2 1 3 17 17 C 1.50698 * 109.47307 * 59.99885 * 16 2 1 18 18 H 1.08001 * 119.99438 * 0.02562 * 17 16 2 19 19 C 1.37875 * 120.00458 * 180.02562 * 17 16 2 20 20 N 1.31517 * 119.99672 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00323 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47248 * 89.99737 * 21 19 17 23 23 H 1.48499 * 109.46963 * 209.99912 * 21 19 17 24 24 H 1.48506 * 109.46768 * 329.99337 * 21 19 17 25 25 H 1.09002 * 109.47082 * 300.00030 * 1 2 3 26 26 H 1.09004 * 109.47108 * 59.99674 * 1 2 3 27 27 H 1.08993 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47428 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46739 * 299.99992 * 3 2 1 30 30 H 1.08997 * 109.47357 * 59.99670 * 3 2 1 31 31 H 1.07999 * 120.00163 * 180.02562 * 4 2 1 32 32 H 0.96998 * 119.99855 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.96359 * 359.97438 * 8 7 6 34 34 H 1.07998 * 120.03795 * 179.74322 * 9 8 7 35 35 H 0.96697 * 117.00562 * 179.97438 * 13 11 10 36 36 H 1.08006 * 120.03613 * 179.69946 * 14 10 9 37 37 H 1.07990 * 119.96938 * 180.02562 * 15 14 10 38 38 H 1.08998 * 109.47444 * 180.02562 * 16 2 1 39 39 H 1.09003 * 109.46989 * 300.00399 * 16 2 1 40 40 H 0.96999 * 119.99970 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.2005 -1.1966 2.0734 6 7 1.6674 -1.8565 3.2175 7 6 0.7644 -2.3838 4.1328 8 6 1.2303 -3.0401 5.2696 9 6 0.3420 -3.5660 6.1716 10 6 -1.0335 -3.4339 5.9547 11 6 -1.9912 -3.9939 6.9248 12 8 -3.1860 -3.8832 6.7324 13 8 -1.5421 -4.6288 8.0254 14 6 -1.4981 -2.7746 4.8120 15 6 -0.6048 -2.2552 3.9111 16 6 2.0400 -0.7212 -1.2492 17 6 1.5377 -0.0109 -2.4797 18 1 0.9171 0.8674 -2.3806 19 6 1.8703 -0.4822 -3.7320 20 7 2.6265 -1.5515 -3.8526 21 14 1.2483 0.3987 -5.2572 22 1 2.2271 1.4397 -5.6614 23 1 1.0825 -0.5804 -6.3613 24 1 -0.0595 1.0371 -4.9612 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 3.0942 -0.8087 1.4015 32 1 2.6211 -1.9455 3.3708 33 1 2.2925 -3.1389 5.4381 34 1 0.7038 -4.0784 7.0508 35 1 -2.2080 -4.9790 8.6328 36 1 -2.5597 -2.6753 4.6392 37 1 -0.9628 -1.7457 3.0288 38 1 3.1300 -0.7217 -1.2490 39 1 1.6766 -1.7489 -1.2493 40 1 2.8608 -1.8829 -4.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755454577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = -39.375187 kcal Electronic energy + Delta-G solvation = -21728.997046 eV Core-core repulsion = 18316.019217 eV Total energy + Delta-G solvation = -3412.977829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46236 -39.19128 -37.79361 -36.20092 -35.73411 -32.88552 -31.87861 -31.18502 -28.82986 -27.10521 -26.48661 -24.51579 -23.80406 -23.03374 -21.48545 -21.05015 -18.54876 -18.04301 -17.70636 -17.01597 -16.71666 -16.26330 -15.69464 -14.78854 -14.73897 -14.44005 -14.02298 -13.87738 -13.58932 -13.45378 -13.20991 -12.95215 -12.47007 -12.16197 -12.11337 -11.67649 -11.43614 -11.22835 -11.04765 -10.99949 -10.87607 -10.72359 -10.66914 -10.33367 -10.19610 -9.93085 -9.73369 -9.23960 -9.18185 -9.04844 -8.41836 -7.55131 -6.06356 -4.07822 0.69588 1.33833 2.28879 2.67272 2.70628 2.96584 3.28514 3.35973 3.38333 3.79537 4.41000 4.62338 4.81556 4.97288 5.09429 5.13697 5.20096 5.30410 5.49205 5.60018 5.79517 5.86202 5.88793 6.05984 6.07111 6.25769 6.31884 6.35108 6.38322 6.49328 6.60004 6.63787 6.69961 6.96147 7.00599 7.10442 7.20408 7.53447 7.64250 7.79873 7.91573 8.29529 8.36009 8.96406 9.55890 11.05153 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.002605 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.945045 B =10745.073144 C =11028.234158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.013 4.013 3 C -0.124 4.124 4 C 0.110 3.890 5 N -0.264 5.264 6 N -0.588 5.588 7 C 0.275 3.725 8 C -0.214 4.214 9 C -0.012 4.012 10 C -0.200 4.200 11 C 0.532 3.468 12 O -0.527 6.527 13 O -0.518 6.518 14 C -0.010 4.010 15 C -0.180 4.180 16 C 0.039 3.961 17 C -0.511 4.511 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.100 0.900 32 H 0.385 0.615 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.410 0.590 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -2.165 19.725 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.016 4.016 3 C -0.182 4.182 4 C -0.104 4.104 5 N -0.065 5.065 6 N -0.303 5.303 7 C 0.169 3.831 8 C -0.237 4.237 9 C -0.032 4.032 10 C -0.203 4.203 11 C 0.378 3.622 12 O -0.417 6.417 13 O -0.330 6.330 14 C -0.029 4.029 15 C -0.202 4.202 16 C 0.001 3.999 17 C -0.550 4.550 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.223 0.777 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.268 0.732 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.775 -2.205 19.460 19.780 hybrid contribution 0.799 -0.005 -0.484 0.934 sum -1.976 -2.210 18.976 19.206 Atomic orbital electron populations 1.21621 0.93878 1.01656 1.00495 1.19811 0.96513 0.94690 0.90563 1.21724 1.00503 0.94703 1.01263 1.26582 0.96319 0.93342 0.94170 1.74218 1.28451 1.08792 0.95085 1.45748 1.06531 1.57902 1.20100 1.17876 0.89876 0.88604 0.86733 1.20414 1.00251 1.07102 0.95982 1.20921 0.91331 0.93629 0.97285 1.18739 0.92365 1.11365 0.97863 1.20872 0.87311 0.74322 0.79649 1.90878 1.17849 1.57028 1.75991 1.84572 1.45218 1.68938 1.34225 1.20934 1.00408 0.91153 0.90386 1.20652 0.90635 1.06420 1.02450 1.19141 0.96305 0.95383 0.89069 1.21150 1.31386 1.12186 0.90237 0.91958 1.25003 0.95236 0.95029 0.99151 1.69958 1.36949 1.23001 1.23571 0.86614 0.79290 0.79388 0.82861 1.20716 1.21332 1.19789 0.94410 0.91600 0.93062 0.93156 0.90536 0.94594 0.88230 0.77696 0.85391 0.84638 0.73223 0.84610 0.83731 0.96283 0.96268 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 7.45 37.16 0.28 -1.88 16 2 C -0.01 -0.24 0.75 -155.66 -0.12 -0.35 16 3 C -0.12 -2.05 8.20 37.16 0.30 -1.74 16 4 C 0.11 1.76 9.56 -13.86 -0.13 1.62 16 5 N -0.26 -4.13 8.96 32.68 0.29 -3.84 16 6 N -0.59 -7.72 6.41 32.42 0.21 -7.51 16 7 C 0.28 3.50 6.72 -83.84 -0.56 2.94 16 8 C -0.21 -2.23 9.85 -39.61 -0.39 -2.62 16 9 C -0.01 -0.13 9.58 -39.39 -0.38 -0.50 16 10 C -0.20 -2.38 5.88 -104.96 -0.62 -2.99 16 11 C 0.53 6.24 8.26 34.45 0.28 6.53 16 12 O -0.53 -7.66 17.12 -19.28 -0.33 -7.99 16 13 O -0.52 -4.30 12.67 -40.68 -0.52 -4.81 16 14 C -0.01 -0.12 9.56 -39.39 -0.38 -0.50 16 15 C -0.18 -2.40 9.46 -39.60 -0.37 -2.78 16 16 C 0.04 0.91 4.02 -27.88 -0.11 0.80 16 17 C -0.51 -13.05 7.65 -34.44 -0.26 -13.31 16 18 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.62 13.29 55.43 0.74 -24.89 16 21 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 27 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.36 6.62 -51.93 -0.34 1.01 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 1.39 8.00 -52.49 -0.42 0.97 16 32 H 0.38 4.11 8.63 -182.60 -1.58 2.53 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.09 7.60 -52.49 -0.40 0.69 16 35 H 0.41 1.57 9.11 45.56 0.42 1.99 16 36 H 0.14 1.63 7.64 -52.48 -0.40 1.23 16 37 H 0.14 2.07 7.34 -52.49 -0.39 1.68 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -30.97 344.01 -7.84 -38.81 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.84 Total: 2.77 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.56 Total: -13.35 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 1.24 Total: -36.24 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.85 Total: -12.80 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.97 -7.84 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755454577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.570 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds