Wall clock time and date at job start Tue Mar 31 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47529 * 2 1 4 4 C 1.50703 * 109.47395 * 120.00150 * 2 1 3 5 5 N 1.28023 * 119.99700 * 359.97438 * 4 2 1 6 6 N 1.40094 * 120.00042 * 180.02562 * 5 4 2 7 7 C 1.38966 * 120.00019 * 179.97438 * 6 5 4 8 8 C 1.39291 * 119.92847 * 179.97438 * 7 6 5 9 9 C 1.37088 * 120.06817 * 180.26082 * 8 7 6 10 10 C 1.39877 * 119.92985 * 359.51083 * 9 8 7 11 11 C 1.47374 * 120.07153 * 180.21508 * 10 9 8 12 12 O 1.21519 * 120.00230 * 180.29959 * 11 10 9 13 13 O 1.34768 * 120.00080 * 0.29478 * 11 10 9 14 14 C 1.39867 * 119.85961 * 0.50884 * 10 9 8 15 15 C 1.37097 * 119.93209 * 359.73173 * 14 10 9 16 16 C 1.53001 * 109.47240 * 240.00012 * 2 1 3 17 17 C 1.50698 * 109.47307 * 59.99885 * 16 2 1 18 18 H 1.08001 * 119.99438 * 0.02562 * 17 16 2 19 19 C 1.37875 * 120.00458 * 180.02562 * 17 16 2 20 20 N 1.31517 * 119.99672 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00323 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47248 * 89.99737 * 21 19 17 23 23 H 1.48499 * 109.46963 * 209.99912 * 21 19 17 24 24 H 1.48506 * 109.46768 * 329.99337 * 21 19 17 25 25 H 1.09002 * 109.47082 * 300.00030 * 1 2 3 26 26 H 1.09004 * 109.47108 * 59.99674 * 1 2 3 27 27 H 1.08993 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47428 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46739 * 299.99992 * 3 2 1 30 30 H 1.08997 * 109.47357 * 59.99670 * 3 2 1 31 31 H 1.07999 * 120.00163 * 180.02562 * 4 2 1 32 32 H 0.96998 * 119.99855 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.96359 * 359.97438 * 8 7 6 34 34 H 1.07998 * 120.03795 * 179.74322 * 9 8 7 35 35 H 0.96697 * 117.00562 * 179.97438 * 13 11 10 36 36 H 1.08006 * 120.03613 * 179.69946 * 14 10 9 37 37 H 1.07990 * 119.96938 * 180.02562 * 15 14 10 38 38 H 1.08998 * 109.47444 * 180.02562 * 16 2 1 39 39 H 1.09003 * 109.46989 * 300.00399 * 16 2 1 40 40 H 0.96999 * 119.99970 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.2005 -1.1966 2.0734 6 7 1.6674 -1.8565 3.2175 7 6 0.7644 -2.3838 4.1328 8 6 1.2303 -3.0401 5.2696 9 6 0.3420 -3.5660 6.1716 10 6 -1.0335 -3.4339 5.9547 11 6 -1.9912 -3.9939 6.9248 12 8 -3.1860 -3.8832 6.7324 13 8 -1.5421 -4.6288 8.0254 14 6 -1.4981 -2.7746 4.8120 15 6 -0.6048 -2.2552 3.9111 16 6 2.0400 -0.7212 -1.2492 17 6 1.5377 -0.0109 -2.4797 18 1 0.9171 0.8674 -2.3806 19 6 1.8703 -0.4822 -3.7320 20 7 2.6265 -1.5515 -3.8526 21 14 1.2483 0.3987 -5.2572 22 1 2.2271 1.4397 -5.6614 23 1 1.0825 -0.5804 -6.3613 24 1 -0.0595 1.0371 -4.9612 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 3.0942 -0.8087 1.4015 32 1 2.6211 -1.9455 3.3708 33 1 2.2925 -3.1389 5.4381 34 1 0.7038 -4.0784 7.0508 35 1 -2.2080 -4.9790 8.6328 36 1 -2.5597 -2.6753 4.6392 37 1 -0.9628 -1.7457 3.0288 38 1 3.1300 -0.7217 -1.2490 39 1 1.6766 -1.7489 -1.2493 40 1 2.8608 -1.8829 -4.7336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755454577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:52 Heat of formation + Delta-G solvation = -57.798411 kcal Electronic energy + Delta-G solvation = -21729.795937 eV Core-core repulsion = 18316.019217 eV Total energy + Delta-G solvation = -3413.776720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35763 -40.16331 -39.09161 -37.11209 -36.93051 -34.60604 -33.24956 -32.09254 -29.93268 -28.89322 -27.91222 -25.92480 -24.95508 -24.24224 -22.69703 -22.00520 -19.78695 -18.98687 -18.70672 -18.32100 -17.99542 -17.78697 -16.57981 -16.53927 -15.67827 -15.59382 -15.25680 -15.12035 -14.61571 -14.53976 -14.47338 -14.39190 -13.95973 -13.40923 -13.27906 -12.94955 -12.72157 -12.69934 -12.56523 -12.51645 -12.28561 -12.11523 -12.06153 -11.69739 -11.64688 -11.28691 -11.15152 -10.80010 -10.66901 -10.47862 -10.08458 -8.57778 -8.12173 -6.18782 -0.25151 0.44332 1.15658 1.44971 1.46264 1.55742 1.63190 1.70307 2.19379 2.47198 2.87182 3.23144 3.69763 3.87872 3.94737 4.04226 4.20931 4.31610 4.37317 4.41672 4.47461 4.61258 4.81909 4.95960 5.02981 5.10326 5.17197 5.18547 5.21764 5.37210 5.44049 5.49473 5.53006 5.57102 5.59706 5.64167 5.68570 5.83237 5.91766 6.22526 6.32879 6.95375 7.04626 7.23823 7.48749 8.99881 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.002605 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.945045 B =10745.073144 C =11028.234158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.008 4.008 3 C -0.118 4.118 4 C 0.099 3.901 5 N -0.271 5.271 6 N -0.584 5.584 7 C 0.257 3.743 8 C -0.201 4.201 9 C -0.003 4.003 10 C -0.209 4.209 11 C 0.538 3.462 12 O -0.562 6.562 13 O -0.505 6.505 14 C -0.018 4.018 15 C -0.195 4.195 16 C 0.046 3.954 17 C -0.513 4.513 18 H 0.071 0.929 19 C -0.001 4.001 20 N -0.937 5.937 21 Si 0.954 3.046 22 H -0.273 1.273 23 H -0.291 1.291 24 H -0.263 1.263 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.121 0.879 32 H 0.399 0.601 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.431 0.569 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.001 0.999 39 H -0.016 1.016 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 -1.807 21.814 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.010 4.010 3 C -0.177 4.177 4 C -0.115 4.115 5 N -0.074 5.074 6 N -0.302 5.302 7 C 0.153 3.847 8 C -0.224 4.224 9 C -0.022 4.022 10 C -0.212 4.212 11 C 0.385 3.615 12 O -0.456 6.456 13 O -0.318 6.318 14 C -0.037 4.037 15 C -0.217 4.217 16 C 0.008 3.992 17 C -0.551 4.551 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.578 5.578 21 Si 0.780 3.220 22 H -0.199 1.199 23 H -0.217 1.217 24 H -0.187 1.187 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.240 0.760 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.292 0.708 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.019 0.981 39 H 0.002 0.998 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.270 -1.848 21.594 21.792 hybrid contribution 0.600 -0.224 -0.941 1.138 sum -1.670 -2.072 20.653 20.824 Atomic orbital electron populations 1.21517 0.93916 1.00642 1.00737 1.19549 0.96360 0.95535 0.89604 1.21655 1.00905 0.93347 1.01753 1.26243 0.97246 0.94260 0.93791 1.74056 1.29458 1.08095 0.95771 1.45584 1.07430 1.57830 1.19329 1.18115 0.89508 0.89519 0.87600 1.20731 1.01928 1.05253 0.94459 1.21230 0.90303 0.92791 0.97902 1.18924 0.93496 1.11165 0.97621 1.20823 0.86582 0.73915 0.80132 1.90871 1.19254 1.58516 1.76939 1.84511 1.45788 1.68069 1.33445 1.20930 1.00206 0.91662 0.90938 1.20580 0.91524 1.07278 1.02346 1.18962 0.94991 0.93897 0.91330 1.21581 1.30407 1.12075 0.91036 0.91053 1.25854 0.95692 0.95807 1.02448 1.70094 1.38810 1.24823 1.24064 0.85608 0.79186 0.78217 0.79037 1.19904 1.21750 1.18722 0.92478 0.92845 0.94700 0.92531 0.91962 0.92077 0.86237 0.76013 0.82286 0.81751 0.70761 0.85075 0.85435 0.98070 0.99780 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.02 7.45 71.98 0.54 -3.48 16 2 C -0.01 -0.28 0.75 -52.93 -0.04 -0.32 16 3 C -0.12 -3.78 8.20 71.98 0.59 -3.19 16 4 C 0.10 3.09 9.56 88.66 0.85 3.94 16 5 N -0.27 -8.32 8.96 -50.46 -0.45 -8.77 16 6 N -0.58 -14.40 6.41 -51.34 -0.33 -14.73 16 7 C 0.26 6.14 6.72 38.52 0.26 6.40 16 8 C -0.20 -3.54 9.85 22.25 0.22 -3.32 16 9 C 0.00 -0.06 9.58 22.40 0.21 0.16 16 10 C -0.21 -4.62 5.88 -20.08 -0.12 -4.73 16 11 C 0.54 11.73 8.26 70.23 0.58 12.31 16 12 O -0.56 -16.03 17.12 19.77 0.34 -15.69 16 13 O -0.50 -6.88 12.67 -56.78 -0.72 -7.60 16 14 C -0.02 -0.45 9.56 22.40 0.21 -0.24 16 15 C -0.20 -5.21 9.46 22.25 0.21 -5.00 16 16 C 0.05 2.22 4.02 29.85 0.12 2.34 16 17 C -0.51 -26.55 7.65 25.60 0.20 -26.36 16 18 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 19 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 20 N -0.94 -55.03 13.29 21.45 0.28 -54.75 16 21 Si 0.95 42.69 29.54 68.60 2.03 44.71 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H 0.06 1.82 8.06 -2.39 -0.02 1.81 16 26 H 0.05 2.03 6.62 -2.38 -0.02 2.01 16 27 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 2.15 6.62 -2.38 -0.02 2.13 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.12 3.19 8.00 -2.91 -0.02 3.16 16 32 H 0.40 7.59 8.63 -213.33 -1.84 5.75 16 33 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.17 1.88 7.60 -2.91 -0.02 1.86 16 35 H 0.43 2.04 9.11 -74.06 -0.67 1.37 16 36 H 0.13 3.29 7.64 -2.91 -0.02 3.27 16 37 H 0.13 3.77 7.34 -2.92 -0.02 3.75 16 38 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 39 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -68.08 344.01 4.00 -64.08 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -1.44 Total: 13.82 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 4.29 Total: -21.09 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -0.50 Total: -78.24 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.38 Total: -23.28 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -68.08 4.00 -64.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755454577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.284 kcal (2) G-P(sol) polarization free energy of solvation -68.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds