Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 C 1.50697 * 109.47175 * 120.00276 * 2 1 3 5 5 N 1.28012 * 120.00069 * 359.97438 * 4 2 1 6 6 N 1.40097 * 120.00101 * 180.02562 * 5 4 2 7 7 C 1.34784 * 120.00338 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99672 * 359.97438 * 7 6 5 9 9 C 1.47487 * 120.00206 * 179.97438 * 7 6 5 10 10 C 1.39729 * 120.19513 * 0.02562 * 9 7 6 11 11 C 1.37785 * 119.90676 * 179.97438 * 10 9 7 12 12 C 1.38548 * 120.30293 * 359.97438 * 11 10 9 13 13 C 1.38063 * 120.39153 * 0.02562 * 12 11 10 14 14 C 1.38692 * 120.08757 * 359.96843 * 13 12 11 15 15 O 1.35666 * 120.15173 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46755 * 240.00194 * 2 1 3 17 17 C 1.50697 * 109.47212 * 60.00105 * 16 2 1 18 18 H 1.07997 * 120.00264 * 359.97438 * 17 16 2 19 19 C 1.37876 * 119.99966 * 179.97438 * 17 16 2 20 20 N 1.31520 * 120.00177 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47196 * 59.99727 * 21 19 17 23 23 H 1.48505 * 109.47419 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47386 * 300.00049 * 21 19 17 25 25 H 1.09003 * 109.47125 * 299.99867 * 1 2 3 26 26 H 1.08995 * 109.47333 * 59.99897 * 1 2 3 27 27 H 1.09005 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46938 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47611 * 300.00492 * 3 2 1 30 30 H 1.09003 * 109.47070 * 60.00099 * 3 2 1 31 31 H 1.07998 * 119.99920 * 180.02562 * 4 2 1 32 32 H 0.96998 * 120.00008 * 359.97438 * 6 5 4 33 33 H 1.08000 * 120.04535 * 0.25131 * 10 9 7 34 34 H 1.07998 * 119.84718 * 179.97438 * 11 10 9 35 35 H 1.08003 * 119.80089 * 179.97438 * 12 11 10 36 36 H 1.07997 * 119.95527 * 180.02562 * 13 12 11 37 37 H 0.96696 * 113.99755 * 90.00640 * 15 14 13 38 38 H 1.09001 * 109.46983 * 179.97438 * 16 2 1 39 39 H 1.09001 * 109.47333 * 299.99722 * 16 2 1 40 40 H 0.96995 * 119.99981 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.2005 -1.1966 2.0733 6 7 1.6675 -1.8566 3.2174 7 6 0.7917 -2.3689 4.1046 8 8 -0.4040 -2.2578 3.9122 9 6 1.2833 -3.0642 5.3088 10 6 2.6562 -3.1937 5.5342 11 6 3.1090 -3.8440 6.6614 12 6 2.2090 -4.3702 7.5739 13 6 0.8498 -4.2494 7.3635 14 6 0.3762 -3.5979 6.2344 15 8 -0.9590 -3.4779 6.0267 16 6 2.0399 -0.7212 -1.2493 17 6 1.5376 -0.0108 -2.4797 18 1 0.9164 0.8671 -2.3806 19 6 1.8710 -0.4815 -3.7320 20 7 2.6279 -1.5503 -3.8527 21 14 1.2478 0.3987 -5.2572 22 1 1.7417 1.7992 -5.2571 23 1 1.7438 -0.3005 -6.4697 24 1 -0.2372 0.3977 -5.2573 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.0941 -0.8088 1.4015 32 1 2.6211 -1.9455 3.3707 33 1 3.3615 -2.7808 4.8281 34 1 4.1703 -3.9439 6.8345 35 1 2.5728 -4.8787 8.4545 36 1 0.1545 -4.6618 8.0796 37 1 -1.3460 -2.6779 6.4078 38 1 3.1299 -0.7208 -1.2495 39 1 1.6766 -1.7489 -1.2493 40 1 2.8622 -1.8816 -4.7337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755481085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = -18.933127 kcal Electronic energy + Delta-G solvation = -22098.178510 eV Core-core repulsion = 18686.087115 eV Total energy + Delta-G solvation = -3412.091395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55202 -38.69900 -37.44232 -36.93898 -35.17980 -32.67270 -32.00132 -30.34520 -29.99452 -27.05230 -26.37331 -24.69037 -23.76584 -22.87802 -21.75190 -20.59143 -19.05280 -18.21113 -17.30144 -16.87190 -16.23145 -15.96710 -15.75334 -15.23078 -14.92272 -14.60494 -14.33573 -13.89783 -13.69004 -13.26205 -12.85337 -12.70829 -12.53626 -12.07096 -12.04655 -11.82779 -11.31762 -10.97964 -10.96687 -10.90919 -10.82977 -10.57424 -10.25987 -10.07114 -9.83769 -9.59900 -9.44130 -9.39942 -9.04839 -8.97457 -8.45484 -8.35070 -6.00182 -4.01228 0.46036 0.86489 2.29144 2.64152 2.93941 3.34571 3.39349 3.41735 3.55496 3.91775 4.36701 4.39875 4.46725 4.58854 4.88966 4.96406 5.15396 5.32325 5.33599 5.36971 5.44997 5.78899 5.86081 5.92742 5.96374 5.98928 6.07192 6.32356 6.39298 6.55527 6.66268 6.81427 7.05091 7.10357 7.22151 7.28184 7.46386 7.60336 7.69600 7.82407 7.98181 8.38697 8.63538 9.02727 9.61919 11.11439 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.002816 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.810487 B = 9940.083120 C =10167.315966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.014 4.014 3 C -0.123 4.123 4 C 0.108 3.892 5 N -0.247 5.247 6 N -0.591 5.591 7 C 0.572 3.428 8 O -0.490 6.490 9 C -0.160 4.160 10 C -0.072 4.072 11 C -0.138 4.138 12 C -0.079 4.079 13 C -0.156 4.156 14 C 0.171 3.829 15 O -0.477 6.477 16 C 0.040 3.960 17 C -0.510 4.510 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.276 1.276 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.100 0.900 32 H 0.375 0.625 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.397 0.603 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.755 -2.268 23.323 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.017 4.017 3 C -0.181 4.181 4 C -0.107 4.107 5 N -0.048 5.048 6 N -0.333 5.333 7 C 0.359 3.641 8 O -0.362 6.362 9 C -0.165 4.165 10 C -0.091 4.091 11 C -0.156 4.156 12 C -0.097 4.097 13 C -0.175 4.175 14 C 0.125 3.875 15 O -0.288 6.288 16 C 0.001 3.999 17 C -0.549 4.549 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.214 0.786 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.255 0.745 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.071 -3.036 23.118 23.341 hybrid contribution 1.280 0.630 -0.652 1.568 sum 2.351 -2.406 22.466 22.716 Atomic orbital electron populations 1.21605 0.93736 1.01859 1.00365 1.19821 0.96649 0.94661 0.90539 1.21716 1.00408 0.94731 1.01242 1.26717 0.96239 0.93351 0.94383 1.74620 1.27535 1.08024 0.94609 1.47041 1.08383 1.56706 1.21144 1.17725 0.86020 0.78599 0.81734 1.90821 1.14812 1.55532 1.75050 1.20410 0.94246 1.04373 0.97454 1.21296 0.93647 0.96865 0.97307 1.21115 1.00365 0.99525 0.94553 1.21248 0.92552 0.97028 0.98868 1.21474 0.96436 1.02236 0.97355 1.18490 0.83760 0.94015 0.91282 1.84767 1.16834 1.46986 1.80210 1.19134 0.96252 0.95420 0.89047 1.21129 1.31261 1.12217 0.90268 0.92002 1.24999 0.95252 0.95062 0.99100 1.69951 1.36963 1.23070 1.23602 0.86677 0.79295 0.79708 0.82451 1.20245 1.21438 1.20207 0.94356 0.91736 0.92991 0.93173 0.90556 0.94620 0.88246 0.78640 0.85305 0.84985 0.85034 0.84568 0.74482 0.96253 0.96252 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 7.45 37.16 0.28 -2.13 16 2 C -0.01 -0.28 0.75 -155.67 -0.12 -0.39 16 3 C -0.12 -2.16 8.20 37.16 0.30 -1.85 16 4 C 0.11 1.91 9.56 -13.87 -0.13 1.77 16 5 N -0.25 -4.61 9.70 32.67 0.32 -4.29 16 6 N -0.59 -9.13 6.20 30.45 0.19 -8.94 16 7 C 0.57 9.28 7.88 -12.49 -0.10 9.18 16 8 O -0.49 -9.85 15.50 -16.61 -0.26 -10.10 16 9 C -0.16 -1.96 5.89 -104.85 -0.62 -2.58 16 10 C -0.07 -0.65 9.54 -39.19 -0.37 -1.03 16 11 C -0.14 -0.97 10.02 -39.63 -0.40 -1.37 16 12 C -0.08 -0.53 10.03 -39.53 -0.40 -0.93 16 13 C -0.16 -1.31 9.98 -39.48 -0.39 -1.70 16 14 C 0.17 1.95 6.72 -38.69 -0.26 1.69 16 15 O -0.48 -5.87 11.58 -40.58 -0.47 -6.34 16 16 C 0.04 0.97 4.02 -27.89 -0.11 0.85 16 17 C -0.51 -13.52 7.65 -34.44 -0.26 -13.79 16 18 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 26 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 27 H 0.05 1.13 8.06 -51.93 -0.42 0.71 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.47 8.00 -52.49 -0.42 1.05 16 32 H 0.38 4.36 6.66 -182.60 -1.22 3.14 16 33 H 0.13 0.90 6.40 -52.49 -0.34 0.57 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.40 3.28 9.06 45.56 0.41 3.69 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -34.61 340.48 -7.53 -42.14 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.48 Total: 2.56 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.68 Total: -10.79 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 1.24 Total: -38.76 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.73 Total: -16.45 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.61 -7.53 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755481085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.209 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds