Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 C 1.50697 * 109.47175 * 120.00276 * 2 1 3 5 5 N 1.28012 * 120.00069 * 359.97438 * 4 2 1 6 6 N 1.40097 * 120.00101 * 180.02562 * 5 4 2 7 7 C 1.34784 * 120.00338 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99672 * 359.97438 * 7 6 5 9 9 C 1.47487 * 120.00206 * 179.97438 * 7 6 5 10 10 C 1.39729 * 120.19513 * 0.02562 * 9 7 6 11 11 C 1.37785 * 119.90676 * 179.97438 * 10 9 7 12 12 C 1.38548 * 120.30293 * 359.97438 * 11 10 9 13 13 C 1.38063 * 120.39153 * 0.02562 * 12 11 10 14 14 C 1.38692 * 120.08757 * 359.96843 * 13 12 11 15 15 O 1.35666 * 120.15173 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46755 * 240.00194 * 2 1 3 17 17 C 1.50697 * 109.47212 * 60.00105 * 16 2 1 18 18 H 1.07997 * 120.00264 * 359.97438 * 17 16 2 19 19 C 1.37876 * 119.99966 * 179.97438 * 17 16 2 20 20 N 1.31520 * 120.00177 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47196 * 59.99727 * 21 19 17 23 23 H 1.48505 * 109.47419 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47386 * 300.00049 * 21 19 17 25 25 H 1.09003 * 109.47125 * 299.99867 * 1 2 3 26 26 H 1.08995 * 109.47333 * 59.99897 * 1 2 3 27 27 H 1.09005 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46938 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47611 * 300.00492 * 3 2 1 30 30 H 1.09003 * 109.47070 * 60.00099 * 3 2 1 31 31 H 1.07998 * 119.99920 * 180.02562 * 4 2 1 32 32 H 0.96998 * 120.00008 * 359.97438 * 6 5 4 33 33 H 1.08000 * 120.04535 * 0.25131 * 10 9 7 34 34 H 1.07998 * 119.84718 * 179.97438 * 11 10 9 35 35 H 1.08003 * 119.80089 * 179.97438 * 12 11 10 36 36 H 1.07997 * 119.95527 * 180.02562 * 13 12 11 37 37 H 0.96696 * 113.99755 * 90.00640 * 15 14 13 38 38 H 1.09001 * 109.46983 * 179.97438 * 16 2 1 39 39 H 1.09001 * 109.47333 * 299.99722 * 16 2 1 40 40 H 0.96995 * 119.99981 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.2005 -1.1966 2.0733 6 7 1.6675 -1.8566 3.2174 7 6 0.7917 -2.3689 4.1046 8 8 -0.4040 -2.2578 3.9122 9 6 1.2833 -3.0642 5.3088 10 6 2.6562 -3.1937 5.5342 11 6 3.1090 -3.8440 6.6614 12 6 2.2090 -4.3702 7.5739 13 6 0.8498 -4.2494 7.3635 14 6 0.3762 -3.5979 6.2344 15 8 -0.9590 -3.4779 6.0267 16 6 2.0399 -0.7212 -1.2493 17 6 1.5376 -0.0108 -2.4797 18 1 0.9164 0.8671 -2.3806 19 6 1.8710 -0.4815 -3.7320 20 7 2.6279 -1.5503 -3.8527 21 14 1.2478 0.3987 -5.2572 22 1 1.7417 1.7992 -5.2571 23 1 1.7438 -0.3005 -6.4697 24 1 -0.2372 0.3977 -5.2573 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.0941 -0.8088 1.4015 32 1 2.6211 -1.9455 3.3707 33 1 3.3615 -2.7808 4.8281 34 1 4.1703 -3.9439 6.8345 35 1 2.5728 -4.8787 8.4545 36 1 0.1545 -4.6618 8.0796 37 1 -1.3460 -2.6779 6.4078 38 1 3.1299 -0.7208 -1.2495 39 1 1.6766 -1.7489 -1.2493 40 1 2.8622 -1.8816 -4.7337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755481085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -42.197550 kcal Electronic energy + Delta-G solvation = -22099.187331 eV Core-core repulsion = 18686.087115 eV Total energy + Delta-G solvation = -3413.100216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48850 -39.83226 -38.91383 -37.73508 -36.67003 -34.51529 -33.21612 -31.37546 -30.78027 -28.98530 -27.95329 -26.05757 -25.10130 -23.80034 -23.03657 -21.76631 -20.22009 -19.23225 -18.45225 -18.33724 -18.10985 -16.80017 -16.66538 -16.46953 -16.19041 -15.98962 -15.39403 -15.18681 -14.92819 -14.75406 -14.48035 -13.98398 -13.52506 -13.27447 -13.16924 -12.92999 -12.75087 -12.70750 -12.68822 -12.57479 -12.30307 -12.09091 -11.83583 -11.68676 -11.22947 -11.18471 -11.02189 -10.75524 -10.47850 -10.17044 -9.86985 -9.69576 -8.12313 -6.19070 -0.32858 0.22819 0.98959 1.43528 1.46341 1.47639 1.54464 1.93454 2.47231 2.69453 3.20488 3.22785 3.42513 3.76079 3.80298 3.98264 4.06872 4.30441 4.34049 4.38218 4.40022 4.57490 4.67060 4.84250 4.91048 5.00513 5.14219 5.15555 5.18093 5.28127 5.39305 5.41049 5.50933 5.52186 5.55845 5.75602 5.76801 5.90412 6.08667 6.31828 6.53067 6.75191 6.94173 7.39678 7.48166 8.99887 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.002816 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.810487 B = 9940.083120 C =10167.315966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.011 4.011 3 C -0.116 4.116 4 C 0.108 3.892 5 N -0.278 5.278 6 N -0.582 5.582 7 C 0.567 3.433 8 O -0.543 6.543 9 C -0.189 4.189 10 C -0.072 4.072 11 C -0.132 4.132 12 C -0.064 4.064 13 C -0.158 4.158 14 C 0.149 3.851 15 O -0.501 6.501 16 C 0.048 3.952 17 C -0.516 4.516 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.936 5.936 21 Si 0.955 3.045 22 H -0.263 1.263 23 H -0.290 1.290 24 H -0.273 1.273 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.131 0.869 32 H 0.396 0.604 33 H 0.146 0.854 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.155 0.845 37 H 0.407 0.593 38 H 0.007 0.993 39 H -0.019 1.019 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 -1.860 25.388 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.014 4.014 3 C -0.174 4.174 4 C -0.106 4.106 5 N -0.080 5.080 6 N -0.325 5.325 7 C 0.357 3.643 8 O -0.419 6.419 9 C -0.194 4.194 10 C -0.091 4.091 11 C -0.150 4.150 12 C -0.082 4.082 13 C -0.176 4.176 14 C 0.102 3.898 15 O -0.314 6.314 16 C 0.010 3.990 17 C -0.554 4.554 18 H 0.089 0.911 19 C -0.197 4.197 20 N -0.577 5.577 21 Si 0.781 3.219 22 H -0.187 1.187 23 H -0.216 1.216 24 H -0.198 1.198 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.237 0.763 33 H 0.164 0.836 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.173 0.827 37 H 0.267 0.733 38 H 0.026 0.974 39 H -0.001 1.001 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.768 -2.605 25.199 25.484 hybrid contribution 0.794 0.418 -1.144 1.454 sum 3.562 -2.187 24.055 24.416 Atomic orbital electron populations 1.21493 0.94429 1.00209 1.00524 1.19630 0.96008 0.96022 0.89717 1.21641 1.01195 0.92804 1.01805 1.26537 0.97587 0.93017 0.93461 1.74486 1.29347 1.08336 0.95857 1.46890 1.09589 1.56045 1.20026 1.18517 0.85492 0.77804 0.82469 1.90777 1.16945 1.57746 1.76434 1.20278 0.96047 1.06590 0.96528 1.21545 0.92275 0.96798 0.98494 1.21551 1.02234 0.97890 0.93290 1.21753 0.91595 0.95272 0.99544 1.21715 0.97851 1.01557 0.96513 1.18868 0.83227 0.95192 0.92478 1.84717 1.17932 1.47860 1.80905 1.18947 0.95267 0.93690 0.91105 1.21545 1.30556 1.12251 0.91043 0.91072 1.25864 0.95606 0.95821 1.02449 1.70089 1.38667 1.24811 1.24183 0.85641 0.78712 0.79065 0.78494 1.18726 1.21573 1.19818 0.93116 0.92431 0.95527 0.91917 0.91760 0.92219 0.85178 0.76271 0.83648 0.81562 0.81296 0.82733 0.73337 0.97448 1.00111 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.52 7.45 71.98 0.54 -3.98 16 2 C -0.01 -0.44 0.75 -52.93 -0.04 -0.48 16 3 C -0.12 -3.91 8.20 71.98 0.59 -3.32 16 4 C 0.11 3.78 9.56 88.66 0.85 4.63 16 5 N -0.28 -10.47 9.70 -50.47 -0.49 -10.96 16 6 N -0.58 -17.92 6.20 -175.82 -1.09 -19.01 16 7 C 0.57 18.87 7.88 86.68 0.68 19.55 16 8 O -0.54 -22.98 15.50 16.85 0.26 -22.72 16 9 C -0.19 -4.59 5.89 -20.01 -0.12 -4.70 16 10 C -0.07 -1.14 9.54 22.52 0.21 -0.93 16 11 C -0.13 -1.33 10.02 22.24 0.22 -1.11 16 12 C -0.06 -0.60 10.03 22.30 0.22 -0.38 16 13 C -0.16 -2.29 9.98 22.34 0.22 -2.06 16 14 C 0.15 3.36 6.72 22.84 0.15 3.52 16 15 O -0.50 -12.97 11.58 -68.90 -0.80 -13.76 16 16 C 0.05 2.41 4.02 29.85 0.12 2.53 16 17 C -0.52 -27.60 7.65 25.60 0.20 -27.41 16 18 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 19 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 20 N -0.94 -56.03 13.29 21.45 0.28 -55.74 16 21 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 26 H 0.06 2.40 6.62 -2.39 -0.02 2.39 16 27 H 0.03 1.19 8.06 -2.38 -0.02 1.17 16 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.06 2.31 6.62 -2.39 -0.02 2.29 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.13 3.63 8.00 -2.91 -0.02 3.61 16 32 H 0.40 8.72 6.66 -213.33 -1.42 7.30 16 33 H 0.15 1.65 6.40 -2.91 -0.02 1.64 16 34 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.17 0.38 8.06 -2.91 -0.02 0.35 16 36 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 37 H 0.41 7.44 9.06 -74.06 -0.67 6.77 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 40 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -78.31 340.48 3.49 -74.81 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -1.02 Total: 15.45 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.32 Total: -13.70 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -1.30 Total: -85.71 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.54 Total: -36.48 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -78.31 3.49 -74.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755481085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.617 kcal (2) G-P(sol) polarization free energy of solvation -78.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds