Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47108 * 2 1 4 4 C 1.53007 * 109.47108 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47250 * 60.00184 * 3 2 1 6 6 C 1.34779 * 119.99957 * 60.27265 * 5 3 2 7 7 O 1.21554 * 119.99609 * 359.72401 * 6 5 3 8 8 C 1.47883 * 120.00368 * 179.72800 * 6 5 3 9 9 C 1.39924 * 120.02065 * 359.72607 * 8 6 5 10 10 C 1.38329 * 120.35512 * 179.71875 * 9 8 6 11 11 C 1.37753 * 120.41246 * 0.55821 * 10 9 8 12 12 C 1.40752 * 120.03875 * 359.71871 * 11 10 9 13 13 C 1.41439 * 120.17871 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99545 * 24.44035 * 13 12 11 15 15 C 1.39939 * 120.00394 * 204.44133 * 13 12 11 16 16 N 1.30826 * 119.99591 * 17.87943 * 15 13 12 17 17 Si 1.86795 * 120.00089 * 197.88145 * 15 13 12 18 18 H 1.48500 * 109.47248 * 59.99913 * 17 15 13 19 19 H 1.48501 * 109.47038 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46996 * 299.99565 * 17 15 13 21 21 C 1.38991 * 120.02586 * 179.97438 * 8 6 5 22 22 C 1.50702 * 109.47367 * 300.00208 * 3 2 1 23 23 N 1.34779 * 119.99932 * 85.00113 * 22 3 2 24 24 O 1.21280 * 119.99942 * 264.99830 * 22 3 2 25 25 H 1.08994 * 109.46934 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46815 * 299.99819 * 1 2 3 27 27 H 1.09004 * 109.46778 * 59.99529 * 1 2 3 28 28 H 1.08998 * 109.46815 * 240.00181 * 2 1 3 29 29 H 1.08997 * 109.47013 * 120.00689 * 2 1 3 30 30 H 1.08991 * 109.46790 * 300.00300 * 4 3 2 31 31 H 1.08998 * 109.46815 * 60.00181 * 4 3 2 32 32 H 1.08995 * 109.46991 * 179.97438 * 4 3 2 33 33 H 0.96994 * 120.00219 * 240.00035 * 5 3 2 34 34 H 1.07997 * 119.82038 * 359.97289 * 9 8 6 35 35 H 1.08003 * 119.79464 * 180.25484 * 10 9 8 36 36 H 1.08008 * 119.98260 * 179.74177 * 11 10 9 37 37 H 0.97004 * 119.99686 * 180.02562 * 16 15 13 38 38 H 1.07995 * 120.20595 * 359.97438 * 21 8 6 39 39 H 0.96999 * 119.99876 * 0.02562 * 23 22 3 40 40 H 0.97000 * 119.99908 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 1.5518 2.1331 1.1962 6 6 1.8819 1.6758 2.4203 7 8 2.5807 0.6875 2.5317 8 6 1.3941 2.3764 3.6278 9 6 0.5943 3.5175 3.5000 10 6 0.1294 4.1748 4.6248 11 6 0.4575 3.7208 5.8833 12 6 1.2656 2.5780 6.0316 13 6 1.6039 2.1090 7.3224 14 1 0.9697 2.3422 8.1650 15 6 2.7601 1.3428 7.5078 16 7 3.7003 1.3469 6.5980 17 14 2.9610 0.3143 9.0541 18 1 1.8574 -0.6759 9.1369 19 1 4.2634 -0.3978 9.0091 20 1 2.9224 1.1995 10.2458 21 6 1.7338 1.9050 4.8904 22 6 1.5377 2.1530 -1.2304 23 7 0.3157 2.7216 -1.2286 24 8 2.2330 2.2131 -2.2223 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9337 0.9285 0.8890 31 1 3.9330 0.9288 -0.8909 32 1 3.9334 2.4701 -0.0011 33 1 0.9941 2.9217 1.1072 34 1 0.3353 3.8845 2.5179 35 1 -0.4907 5.0523 4.5157 36 1 0.0940 4.2419 6.7568 37 1 4.5016 0.8155 6.7264 38 1 2.3538 1.0268 4.9937 39 1 -0.2402 2.6738 -0.4351 40 1 -0.0078 3.1785 -2.0207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770003918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = -62.918444 kcal Electronic energy + Delta-G solvation = -23443.854856 eV Core-core repulsion = 20029.856114 eV Total energy + Delta-G solvation = -3413.998742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73150 -38.91095 -37.20991 -35.51510 -33.84459 -33.67352 -32.29326 -30.41442 -29.55985 -29.20607 -25.41439 -24.70865 -23.04669 -22.50891 -21.04910 -20.03195 -19.09553 -18.38581 -17.35593 -17.07321 -15.87633 -15.57984 -15.20603 -14.82753 -14.71836 -14.43418 -14.04773 -13.63804 -13.37395 -13.31227 -13.20186 -12.80340 -12.57911 -12.19883 -11.86049 -11.71734 -11.54279 -11.21140 -11.17342 -11.12417 -10.93749 -10.75474 -10.55304 -10.18306 -9.99120 -9.85046 -9.76103 -9.26050 -8.93892 -8.84943 -7.70847 -7.59009 -6.85856 -4.47370 2.11685 2.38385 2.76531 3.04472 3.05859 3.12224 3.28167 3.46680 3.77052 3.87675 4.56556 4.59450 4.84212 5.04280 5.26969 5.45897 5.53924 5.61030 5.67884 5.91046 5.96259 5.98007 6.06410 6.16122 6.19259 6.33448 6.42478 6.56850 6.64699 6.68420 6.91993 6.94369 7.09322 7.14927 7.31227 7.61211 7.67212 7.83982 7.96572 8.03559 8.11766 8.43827 8.73932 8.76620 8.83115 10.08691 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.004374 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.790903 B = 6399.820502 C = 7032.028325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.133 4.133 3 C 0.166 3.834 4 C -0.152 4.152 5 N -0.732 5.732 6 C 0.572 3.428 7 O -0.534 6.534 8 C -0.128 4.128 9 C -0.222 4.222 10 C -0.096 4.096 11 C -0.212 4.212 12 C 0.099 3.901 13 C -0.459 4.459 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.782 5.782 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.091 4.091 22 C 0.528 3.472 23 N -0.853 5.853 24 O -0.534 6.534 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.396 0.604 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.286 0.714 38 H 0.135 0.865 39 H 0.403 0.597 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 0.359 -9.845 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.172 4.172 3 C 0.076 3.924 4 C -0.211 4.211 5 N -0.389 5.389 6 C 0.363 3.637 7 O -0.411 6.411 8 C -0.132 4.132 9 C -0.242 4.242 10 C -0.114 4.114 11 C -0.232 4.232 12 C 0.097 3.903 13 C -0.488 4.488 14 H 0.099 0.901 15 C -0.146 4.146 16 N -0.406 5.406 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.111 4.111 22 C 0.312 3.688 23 N -0.419 5.419 24 O -0.409 6.409 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.233 0.767 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.631 -0.515 -10.377 11.375 hybrid contribution -0.590 0.332 0.629 0.924 sum -5.222 -0.183 -9.748 11.060 Atomic orbital electron populations 1.21905 0.95553 1.02326 1.01852 1.21945 0.96384 0.94031 1.04793 1.20506 0.96435 0.93216 0.82222 1.22075 0.91692 1.03094 1.04199 1.46094 1.55482 1.32453 1.04875 1.18781 0.78738 0.83411 0.82748 1.90645 1.37514 1.26320 1.86607 1.19433 1.03200 0.98175 0.92346 1.20291 1.07381 1.00104 0.96391 1.20426 0.99531 0.98402 0.93055 1.21104 1.07721 0.98960 0.95456 1.17597 0.89953 0.89543 0.93228 1.19580 1.06592 1.28128 0.94506 0.90077 1.25963 0.94889 0.95384 0.98322 1.69775 1.05414 1.31487 1.33886 0.86321 0.78486 0.80289 0.81444 1.18680 1.20177 1.18945 1.21642 0.99854 1.00172 0.89432 1.20602 0.81143 0.77520 0.89570 1.44081 1.18729 1.59211 1.19838 1.90742 1.56495 1.58724 1.34966 0.92239 0.91942 0.92878 0.90978 0.87878 0.89076 0.91123 0.92393 0.76722 0.89492 0.88923 0.88623 0.90297 0.84746 0.76666 0.76766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.98 37.16 0.33 -1.49 16 2 C -0.13 -1.81 4.77 -26.73 -0.13 -1.94 16 3 C 0.17 2.36 0.68 -132.97 -0.09 2.27 16 4 C -0.15 -2.37 7.93 37.16 0.29 -2.07 16 5 N -0.73 -10.97 4.04 -49.60 -0.20 -11.17 16 6 C 0.57 11.29 7.19 -12.31 -0.09 11.20 16 7 O -0.53 -11.87 12.54 5.32 0.07 -11.81 16 8 C -0.13 -2.82 5.87 -105.04 -0.62 -3.43 16 9 C -0.22 -4.31 9.55 -38.92 -0.37 -4.69 16 10 C -0.10 -1.93 10.01 -39.73 -0.40 -2.33 16 11 C -0.21 -4.83 9.78 -38.81 -0.38 -5.21 16 12 C 0.10 2.52 5.57 -106.87 -0.60 1.93 16 13 C -0.46 -11.68 9.05 -37.73 -0.34 -12.02 16 14 H 0.08 1.96 7.91 -52.48 -0.42 1.54 16 15 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 16 N -0.78 -20.07 10.96 55.55 0.61 -19.46 16 17 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 21 C -0.09 -2.30 8.24 -38.44 -0.32 -2.62 16 22 C 0.53 6.90 6.23 -10.98 -0.07 6.83 16 23 N -0.85 -7.58 7.35 31.22 0.23 -7.35 16 24 O -0.53 -8.68 16.93 5.56 0.09 -8.59 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 27 H 0.05 0.52 6.25 -51.93 -0.32 0.20 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.67 6.17 -51.93 -0.32 1.35 16 30 H 0.09 1.60 6.16 -51.93 -0.32 1.28 16 31 H 0.07 1.02 7.87 -51.93 -0.41 0.62 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 5.06 5.26 -40.82 -0.21 4.85 16 34 H 0.09 1.35 6.38 -52.49 -0.33 1.02 16 35 H 0.09 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 37 H 0.29 6.77 8.30 -40.82 -0.34 6.44 16 38 H 0.13 3.69 5.74 -52.49 -0.30 3.38 16 39 H 0.40 3.00 6.94 -40.82 -0.28 2.71 16 40 H 0.40 2.84 8.93 -40.82 -0.36 2.47 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -29.50 325.76 -7.11 -36.60 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -4.93 Total: 15.49 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.85 Total: -11.85 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.64 Total: -37.98 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.16 Total: -20.40 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.50 -7.11 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770003918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.316 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds