Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47009 * 2 1 4 4 C 1.50704 * 109.46861 * 119.99627 * 2 1 3 5 5 O 1.21276 * 120.00117 * 359.97438 * 4 2 1 6 6 N 1.34770 * 119.99629 * 180.02562 * 4 2 1 7 7 N 1.40108 * 120.00003 * 180.02562 * 6 4 2 8 8 C 1.34773 * 120.00399 * 180.02562 * 7 6 4 9 9 O 1.21282 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00092 * 179.97438 * 8 7 6 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 1.09003 * 109.47571 * 300.00433 * 1 2 3 26 26 H 1.09009 * 109.47241 * 60.00245 * 1 2 3 27 27 H 1.08992 * 109.47355 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47261 * 239.99868 * 2 1 3 29 29 H 1.09003 * 109.47024 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47146 * 299.99461 * 3 2 1 31 31 H 1.08998 * 109.47583 * 59.99807 * 3 2 1 32 32 H 0.97000 * 120.00424 * 359.97438 * 6 4 2 33 33 H 0.97000 * 119.99572 * 359.97438 * 7 6 4 34 34 H 1.09001 * 109.46892 * 59.99768 * 10 8 7 35 35 H 1.08991 * 109.47294 * 299.99778 * 10 8 7 36 36 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 37 37 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 38 38 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 39 39 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 40 40 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 1.2441 -1.1708 2.0291 6 7 3.3573 -0.8330 1.4441 7 7 3.8243 -1.4939 2.5878 8 6 5.1493 -1.6161 2.8017 9 8 5.9374 -1.1544 2.0038 10 6 5.6516 -2.3264 4.0322 11 6 7.1587 -2.3259 4.0326 12 6 7.8500 -3.4019 3.5237 13 6 9.2361 -3.4068 3.5289 14 6 9.9418 -2.3278 4.0391 15 6 9.2716 -1.2389 4.5472 16 6 7.8643 -1.2229 4.5470 17 6 7.1648 -0.1089 5.0659 18 1 6.1655 0.1101 4.7197 19 6 7.7672 0.7097 6.0278 20 7 8.7046 0.2275 6.8027 21 14 7.2331 2.4909 6.2053 22 1 8.0183 3.1376 7.2872 23 1 7.4678 3.2078 4.9263 24 1 5.7882 2.5429 6.5441 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.9876 -0.4644 0.8056 33 1 3.1939 -1.8628 3.2261 34 1 5.2890 -3.3543 4.0317 35 1 5.2876 -1.8131 4.9220 36 1 7.3105 -4.2474 3.1232 37 1 9.7704 -4.2574 3.1321 38 1 11.0217 -2.3422 4.0377 39 1 9.8232 -0.3994 4.9437 40 1 8.9232 -0.7169 6.7693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776966552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = -44.560371 kcal Electronic energy + Delta-G solvation = -22721.500770 eV Core-core repulsion = 19308.298095 eV Total energy + Delta-G solvation = -3413.202676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33590 -39.03394 -37.56467 -35.13252 -34.73881 -33.88005 -32.15721 -30.68054 -29.24454 -27.38994 -26.78395 -24.95904 -23.68970 -21.38279 -20.97002 -20.52682 -19.42766 -17.87926 -17.59502 -17.42582 -16.00582 -15.60248 -15.11085 -14.96129 -14.58734 -14.23012 -14.20173 -13.88433 -13.54486 -13.38720 -13.04061 -12.56569 -12.37501 -12.25859 -12.06153 -11.80301 -11.49899 -11.43085 -11.35132 -11.24693 -10.94888 -10.88639 -10.49998 -10.40330 -10.11161 -9.69744 -9.52054 -9.40698 -8.98199 -8.17170 -7.59831 -7.54147 -7.15375 -4.45688 1.96941 2.38498 2.78330 2.84591 3.13027 3.14995 3.27650 3.35955 4.00764 4.06805 4.50898 4.57032 4.65743 4.68484 5.06347 5.30062 5.33781 5.46159 5.55957 5.58945 5.65799 5.82188 5.88834 5.92565 5.99421 6.13934 6.27128 6.32776 6.63140 6.84134 6.87666 6.97180 7.17389 7.38860 7.63417 7.75344 7.80059 7.82369 7.92651 8.01884 8.17726 8.31338 8.67922 8.75010 8.89273 10.04823 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.004557 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.474297 B = 6143.097548 C = 7411.376586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 C -0.149 4.149 4 C 0.512 3.488 5 O -0.546 6.546 6 N -0.521 5.521 7 N -0.540 5.540 8 C 0.516 3.484 9 O -0.521 6.521 10 C -0.058 4.058 11 C -0.190 4.190 12 C -0.065 4.065 13 C -0.253 4.253 14 C -0.084 4.084 15 C -0.215 4.215 16 C 0.118 3.882 17 C -0.517 4.517 18 H 0.072 0.928 19 C 0.041 3.959 20 N -0.796 5.796 21 Si 1.060 2.940 22 H -0.273 1.273 23 H -0.275 1.275 24 H -0.277 1.277 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.429 0.571 33 H 0.427 0.573 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.758 0.493 -9.156 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 C -0.207 4.207 4 C 0.298 3.702 5 O -0.423 6.423 6 N -0.267 5.267 7 N -0.291 5.291 8 C 0.304 3.696 9 O -0.393 6.393 10 C -0.099 4.099 11 C -0.191 4.191 12 C -0.084 4.084 13 C -0.273 4.273 14 C -0.103 4.103 15 C -0.235 4.235 16 C 0.115 3.885 17 C -0.545 4.545 18 H 0.090 0.910 19 C -0.181 4.181 20 N -0.419 5.419 21 Si 0.883 3.117 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.202 1.202 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.271 0.729 33 H 0.268 0.732 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.349 1.888 -8.294 14.183 hybrid contribution -0.201 -1.468 -0.951 1.761 sum -11.550 0.420 -9.245 14.800 Atomic orbital electron populations 1.21621 0.91973 1.02980 1.02344 1.21244 0.98495 0.97291 0.95615 1.21863 1.01664 0.93886 1.03293 1.20961 0.80382 0.80343 0.88502 1.90702 1.54837 1.49521 1.47213 1.44966 1.07029 1.56319 1.18340 1.45453 1.07650 1.58262 1.17735 1.21764 0.79064 0.79873 0.88894 1.90698 1.54474 1.47485 1.46626 1.20186 0.95911 0.99398 0.94425 1.18927 0.90864 0.96322 1.13034 1.20371 0.94040 0.96458 0.97512 1.20267 0.93717 1.00119 1.13169 1.20622 0.97347 0.94393 0.97916 1.21147 0.94457 0.98891 1.08969 1.17384 0.91476 0.90547 0.89131 1.20457 1.03291 1.09334 1.21385 0.90987 1.26928 0.92890 1.06391 0.91888 1.70455 1.23147 1.18997 1.29317 0.83714 0.76855 0.73514 0.77572 1.19800 1.20057 1.20202 0.91736 0.91753 0.91844 0.88102 0.91791 0.91016 0.91708 0.72886 0.73177 0.89906 0.88012 0.89480 0.89372 0.89315 0.87697 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 8.48 37.16 0.32 -0.79 16 2 C -0.10 -0.92 3.26 -91.77 -0.30 -1.22 16 3 C -0.15 -1.18 9.09 37.16 0.34 -0.84 16 4 C 0.51 6.62 7.27 -10.99 -0.08 6.54 16 5 O -0.55 -8.71 15.82 5.56 0.09 -8.62 16 6 N -0.52 -7.27 6.15 31.22 0.19 -7.08 16 7 N -0.54 -8.49 6.26 31.22 0.20 -8.30 16 8 C 0.52 9.83 7.58 -10.99 -0.08 9.74 16 9 O -0.52 -11.83 15.87 5.56 0.09 -11.75 16 10 C -0.06 -1.10 5.18 -29.03 -0.15 -1.25 16 11 C -0.19 -4.41 4.43 -103.91 -0.46 -4.87 16 12 C -0.07 -1.46 9.66 -39.66 -0.38 -1.84 16 13 C -0.25 -5.71 10.05 -39.29 -0.39 -6.10 16 14 C -0.08 -1.98 10.02 -39.66 -0.40 -2.38 16 15 C -0.22 -5.56 7.95 -38.87 -0.31 -5.87 16 16 C 0.12 3.05 5.30 -106.82 -0.57 2.48 16 17 C -0.52 -13.37 8.08 -37.74 -0.30 -13.67 16 18 H 0.07 1.83 6.73 -52.49 -0.35 1.48 16 19 C 0.04 1.03 4.94 -17.34 -0.09 0.95 16 20 N -0.80 -20.83 12.31 55.55 0.68 -20.14 16 21 Si 1.06 21.77 30.00 -169.99 -5.10 16.67 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.43 5.65 7.42 -182.59 -1.35 4.29 16 33 H 0.43 6.06 8.00 -182.59 -1.46 4.60 16 34 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 35 H 0.10 1.91 7.06 -51.93 -0.37 1.54 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.11 2.79 6.49 -52.49 -0.34 2.45 16 40 H 0.30 8.02 6.68 -40.82 -0.27 7.74 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -31.49 339.97 -9.15 -40.64 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.56 Total: 12.59 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -2.86 Total: -19.13 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 1.07 Total: -35.52 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.18 Total: -20.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.10 Total: 16.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.49 -9.15 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776966552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.921 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds