Wall clock time and date at job start Tue Mar 31 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33082 * 119.99522 * 2 1 4 4 C 1.50702 * 119.99641 * 188.39123 * 3 2 1 5 5 N 1.46903 * 109.46901 * 153.14568 * 4 3 2 6 6 C 1.46910 * 110.99866 * 160.41755 * 5 4 3 7 7 C 1.50699 * 109.46974 * 287.89904 * 6 5 4 8 8 H 1.07999 * 120.00243 * 3.53968 * 7 6 5 9 9 C 1.37877 * 119.99668 * 183.54341 * 7 6 5 10 10 N 1.31514 * 119.99929 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00303 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47385 * 89.99628 * 11 9 7 13 13 H 1.48490 * 109.47469 * 209.99886 * 11 9 7 14 14 H 1.48507 * 109.47054 * 330.00171 * 11 9 7 15 15 C 1.46894 * 111.00295 * 284.37045 * 5 4 3 16 16 C 1.50705 * 109.47149 * 170.00025 * 15 5 4 17 17 C 1.38229 * 119.61641 * 95.02359 * 16 15 5 18 18 C 1.38625 * 119.15889 * 179.74827 * 17 16 15 19 19 C 1.38683 * 118.42051 * 0.47323 * 18 17 16 20 20 C 1.38175 * 119.16168 * 359.50287 * 19 18 17 21 21 N 1.31851 * 119.61959 * 275.00259 * 16 15 5 22 22 C 1.46949 * 120.00201 * 180.02562 * 2 1 3 23 23 O 1.21537 * 119.99888 * 187.35644 * 22 2 1 24 24 O 1.34800 * 120.00256 * 7.34605 * 22 2 1 25 25 H 1.08994 * 109.47592 * 90.00291 * 1 2 3 26 26 H 1.09009 * 109.46728 * 209.99764 * 1 2 3 27 27 H 1.09004 * 109.47144 * 329.99562 * 1 2 3 28 28 H 1.07996 * 120.00527 * 8.38982 * 3 2 1 29 29 H 1.09004 * 109.47491 * 33.14829 * 4 3 2 30 30 H 1.09001 * 109.47515 * 273.14873 * 4 3 2 31 31 H 1.08999 * 109.46588 * 47.89740 * 6 5 4 32 32 H 1.08999 * 109.47057 * 167.89536 * 6 5 4 33 33 H 0.97006 * 120.00378 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.47125 * 50.00571 * 15 5 4 35 35 H 1.08998 * 109.47372 * 290.00051 * 15 5 4 36 36 H 1.07997 * 120.41819 * 359.95833 * 17 16 15 37 37 H 1.08000 * 120.79537 * 180.23413 * 18 17 16 38 38 H 1.08001 * 120.41705 * 179.78345 * 19 18 17 39 39 H 1.07997 * 119.61825 * 180.25051 * 20 19 18 40 40 H 0.96691 * 117.00168 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1723 1.1526 0.0000 4 6 3.6672 1.1596 -0.1905 5 7 4.0796 2.4399 -0.7811 6 6 5.5115 2.6841 -0.5615 7 6 5.7476 3.0162 0.8894 8 1 4.9267 2.9873 1.5905 9 6 7.0117 3.3571 1.3216 10 7 7.2178 3.6474 2.5876 11 14 8.4318 3.4065 0.1090 12 1 8.5352 4.7671 -0.4770 13 1 9.6959 3.0735 0.8133 14 1 8.1930 2.4183 -0.9735 15 6 3.7505 2.4899 -2.2119 16 6 3.9582 3.8910 -2.7265 17 6 5.1573 4.2277 -3.3262 18 6 5.3363 5.5178 -3.8009 19 6 4.3016 6.4280 -3.6450 20 6 3.1310 6.0187 -3.0355 21 7 2.9941 4.7815 -2.5998 22 6 2.2418 -1.2726 -0.0006 23 8 3.4497 -1.2769 0.1342 24 8 1.5762 -2.4352 -0.1504 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6410 2.0829 0.1365 29 1 3.9527 0.3442 -0.8551 30 1 4.1572 1.0301 0.7746 31 1 6.0772 1.7909 -0.8265 32 1 5.8373 3.5183 -1.1829 33 1 8.1071 3.8875 2.8917 34 1 2.7094 2.2008 -2.3555 35 1 4.3970 1.8028 -2.7577 36 1 5.9434 3.4940 -3.4267 37 1 6.2610 5.8084 -4.2772 38 1 4.4077 7.4425 -3.9997 39 1 2.3190 6.7203 -2.9140 40 1 2.1024 -3.2463 -0.1439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825729737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:55 Heat of formation + Delta-G solvation = -27.015435 kcal Electronic energy + Delta-G solvation = -22934.452638 eV Core-core repulsion = 19522.010768 eV Total energy + Delta-G solvation = -3412.441870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15189 -39.90538 -37.22208 -35.89996 -34.50360 -32.62648 -32.16499 -31.42988 -29.00511 -27.80833 -25.52076 -24.38588 -23.31094 -22.68949 -21.87429 -19.98206 -19.27469 -17.67504 -16.94253 -16.55396 -16.00717 -15.71568 -15.57101 -15.33890 -14.74157 -14.38637 -13.92274 -13.81907 -13.41293 -13.08378 -13.03144 -12.95311 -12.58964 -12.34318 -12.24917 -12.24018 -11.95639 -11.74802 -11.36409 -11.13790 -11.06775 -10.58765 -10.35180 -10.11727 -9.89567 -9.60525 -9.29926 -9.12883 -8.88433 -8.68860 -8.53765 -7.43483 -6.03932 -4.00218 1.33282 1.42056 1.55299 3.10310 3.26748 3.28294 3.34395 3.35095 3.99782 4.41988 4.56698 4.72170 4.97828 5.03734 5.12190 5.26735 5.27830 5.30046 5.39126 5.56803 5.68976 5.69509 5.73492 5.79270 5.92680 5.98333 6.05046 6.18403 6.32782 6.37954 6.39965 6.47588 6.59099 6.78772 6.85934 6.92388 6.95314 7.58327 7.83255 7.93932 8.09747 8.32309 8.64970 9.05170 9.57602 11.09410 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.006093 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.953072 B = 4594.243235 C = 6461.864735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.208 4.208 3 C -0.009 4.009 4 C 0.073 3.927 5 N -0.520 5.520 6 C 0.159 3.841 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.899 5.899 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.099 3.901 16 C 0.155 3.845 17 C -0.164 4.164 18 C -0.078 4.078 19 C -0.183 4.183 20 C 0.097 3.903 21 N -0.466 5.466 22 C 0.511 3.489 23 O -0.507 6.507 24 O -0.520 6.520 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.143 0.857 29 H 0.061 0.939 30 H 0.118 0.882 31 H -0.009 1.009 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 -3.381 -12.198 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.209 4.209 3 C -0.029 4.029 4 C -0.053 4.053 5 N -0.245 5.245 6 C 0.033 3.967 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.030 4.030 16 C 0.016 3.984 17 C -0.184 4.184 18 C -0.104 4.104 19 C -0.203 4.203 20 C -0.060 4.060 21 N -0.175 5.175 22 C 0.358 3.642 23 O -0.396 6.396 24 O -0.332 6.332 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.008 0.992 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.169 0.831 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -11.241 -2.857 -11.390 16.256 hybrid contribution 2.621 -0.651 -1.249 2.975 sum -8.620 -3.509 -12.639 15.696 Atomic orbital electron populations 1.20588 0.90037 1.02732 1.02139 1.20551 0.96596 0.89392 1.14386 1.24168 0.97358 0.96700 0.84630 1.21565 0.91133 0.89970 1.02632 1.61878 1.21396 1.31791 1.09392 1.20281 0.82562 0.95113 0.98769 1.20989 0.95687 1.45686 0.91940 0.90108 1.24865 0.98368 0.95001 0.94960 1.69888 1.22286 1.47167 1.14485 0.86935 0.82622 0.78758 0.81966 1.20199 1.21125 1.19226 1.20995 1.01292 0.90032 0.90667 1.21078 0.89280 0.95641 0.92392 1.22009 0.98502 0.97691 1.00203 1.21502 0.98663 0.93181 0.97028 1.22048 0.95249 1.00511 1.02455 1.22695 0.96585 0.92850 0.93860 1.67453 1.32334 1.02174 1.15548 1.21251 0.85585 0.84485 0.72925 1.90957 1.15445 1.87567 1.45679 1.84614 1.45657 1.17297 1.85585 0.91597 0.91616 0.91422 0.83982 0.92107 0.86434 0.99154 0.95300 0.92705 0.89974 0.94145 0.85260 0.85262 0.85272 0.83102 0.73683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.81 36.01 0.35 -0.71 16 2 C -0.21 -2.91 5.99 -102.89 -0.62 -3.53 16 3 C -0.01 -0.15 8.69 -36.10 -0.31 -0.46 16 4 C 0.07 1.43 3.62 -4.97 -0.02 1.41 16 5 N -0.52 -10.84 4.36 -238.95 -1.04 -11.89 16 6 C 0.16 3.85 3.64 -4.97 -0.02 3.83 16 7 C -0.50 -14.48 8.96 -34.44 -0.31 -14.79 16 8 H 0.08 2.53 7.84 -52.49 -0.41 2.11 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 11 Si 0.87 21.68 27.40 -169.99 -4.66 17.02 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.27 -6.38 6.65 56.52 0.38 -6.00 16 15 C 0.10 1.74 5.11 -4.98 -0.03 1.71 16 16 C 0.15 2.73 5.70 -82.58 -0.47 2.26 16 17 C -0.16 -2.67 8.03 -39.44 -0.32 -2.99 16 18 C -0.08 -1.09 10.18 -39.27 -0.40 -1.49 16 19 C -0.18 -2.39 10.11 -39.44 -0.40 -2.79 16 20 C 0.10 1.40 11.18 -17.55 -0.20 1.21 16 21 N -0.47 -8.11 10.27 -9.47 -0.10 -8.20 16 22 C 0.51 7.58 8.05 34.26 0.28 7.86 16 23 O -0.51 -9.24 14.14 -19.29 -0.27 -9.51 16 24 O -0.52 -5.86 12.79 -40.76 -0.52 -6.38 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.67 7.79 -51.92 -0.40 0.27 16 27 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 28 H 0.14 2.13 8.04 -52.49 -0.42 1.71 16 29 H 0.06 1.19 5.95 -51.93 -0.31 0.88 16 30 H 0.12 2.69 6.92 -51.93 -0.36 2.33 16 31 H -0.01 -0.23 7.35 -51.93 -0.38 -0.61 16 32 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 34 H 0.08 1.32 7.43 -51.93 -0.39 0.93 16 35 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 36 H 0.13 2.00 8.00 -52.49 -0.42 1.58 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.41 2.84 9.11 45.56 0.42 3.26 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -34.52 338.23 -7.88 -42.40 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.61 Total: 5.09 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.55 Total: -6.53 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.37 Total: -47.19 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.79 Total: -15.89 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.66 Total: 17.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.52 -7.88 -42.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825729737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.388 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds