Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33082 * 119.99522 * 2 1 4 4 C 1.50702 * 119.99641 * 188.39123 * 3 2 1 5 5 N 1.46903 * 109.46901 * 153.14568 * 4 3 2 6 6 C 1.46910 * 110.99866 * 160.41755 * 5 4 3 7 7 C 1.50699 * 109.46974 * 287.89904 * 6 5 4 8 8 H 1.07999 * 120.00243 * 3.53968 * 7 6 5 9 9 C 1.37877 * 119.99668 * 183.54341 * 7 6 5 10 10 N 1.31514 * 119.99929 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00303 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47385 * 89.99628 * 11 9 7 13 13 H 1.48490 * 109.47469 * 209.99886 * 11 9 7 14 14 H 1.48507 * 109.47054 * 330.00171 * 11 9 7 15 15 C 1.46894 * 111.00295 * 284.37045 * 5 4 3 16 16 C 1.50705 * 109.47149 * 170.00025 * 15 5 4 17 17 C 1.38229 * 119.61641 * 95.02359 * 16 15 5 18 18 C 1.38625 * 119.15889 * 179.74827 * 17 16 15 19 19 C 1.38683 * 118.42051 * 0.47323 * 18 17 16 20 20 C 1.38175 * 119.16168 * 359.50287 * 19 18 17 21 21 N 1.31851 * 119.61959 * 275.00259 * 16 15 5 22 22 C 1.46949 * 120.00201 * 180.02562 * 2 1 3 23 23 O 1.21537 * 119.99888 * 187.35644 * 22 2 1 24 24 O 1.34800 * 120.00256 * 7.34605 * 22 2 1 25 25 H 1.08994 * 109.47592 * 90.00291 * 1 2 3 26 26 H 1.09009 * 109.46728 * 209.99764 * 1 2 3 27 27 H 1.09004 * 109.47144 * 329.99562 * 1 2 3 28 28 H 1.07996 * 120.00527 * 8.38982 * 3 2 1 29 29 H 1.09004 * 109.47491 * 33.14829 * 4 3 2 30 30 H 1.09001 * 109.47515 * 273.14873 * 4 3 2 31 31 H 1.08999 * 109.46588 * 47.89740 * 6 5 4 32 32 H 1.08999 * 109.47057 * 167.89536 * 6 5 4 33 33 H 0.97006 * 120.00378 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.47125 * 50.00571 * 15 5 4 35 35 H 1.08998 * 109.47372 * 290.00051 * 15 5 4 36 36 H 1.07997 * 120.41819 * 359.95833 * 17 16 15 37 37 H 1.08000 * 120.79537 * 180.23413 * 18 17 16 38 38 H 1.08001 * 120.41705 * 179.78345 * 19 18 17 39 39 H 1.07997 * 119.61825 * 180.25051 * 20 19 18 40 40 H 0.96691 * 117.00168 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1723 1.1526 0.0000 4 6 3.6672 1.1596 -0.1905 5 7 4.0796 2.4399 -0.7811 6 6 5.5115 2.6841 -0.5615 7 6 5.7476 3.0162 0.8894 8 1 4.9267 2.9873 1.5905 9 6 7.0117 3.3571 1.3216 10 7 7.2178 3.6474 2.5876 11 14 8.4318 3.4065 0.1090 12 1 8.5352 4.7671 -0.4770 13 1 9.6959 3.0735 0.8133 14 1 8.1930 2.4183 -0.9735 15 6 3.7505 2.4899 -2.2119 16 6 3.9582 3.8910 -2.7265 17 6 5.1573 4.2277 -3.3262 18 6 5.3363 5.5178 -3.8009 19 6 4.3016 6.4280 -3.6450 20 6 3.1310 6.0187 -3.0355 21 7 2.9941 4.7815 -2.5998 22 6 2.2418 -1.2726 -0.0006 23 8 3.4497 -1.2769 0.1342 24 8 1.5762 -2.4352 -0.1504 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6410 2.0829 0.1365 29 1 3.9527 0.3442 -0.8551 30 1 4.1572 1.0301 0.7746 31 1 6.0772 1.7909 -0.8265 32 1 5.8373 3.5183 -1.1829 33 1 8.1071 3.8875 2.8917 34 1 2.7094 2.2008 -2.3555 35 1 4.3970 1.8028 -2.7577 36 1 5.9434 3.4940 -3.4267 37 1 6.2610 5.8084 -4.2772 38 1 4.4077 7.4425 -3.9997 39 1 2.3190 6.7203 -2.9140 40 1 2.1024 -3.2463 -0.1439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825729737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = -52.349797 kcal Electronic energy + Delta-G solvation = -22935.551218 eV Core-core repulsion = 19522.010768 eV Total energy + Delta-G solvation = -3413.540451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37283 -41.06889 -38.68457 -37.08543 -35.76884 -34.69416 -33.36395 -32.68686 -30.65525 -29.28912 -26.83124 -25.70492 -24.56734 -24.16643 -23.24321 -21.59630 -20.45606 -19.05448 -18.82628 -17.71914 -17.28529 -16.99891 -16.85653 -16.59164 -16.38083 -15.87372 -15.53140 -15.13765 -14.66133 -14.53313 -14.18197 -14.06873 -14.04924 -13.82404 -13.76222 -13.41721 -13.30176 -13.13828 -12.72182 -12.55002 -12.47650 -12.35472 -11.96188 -11.91884 -11.57584 -11.29307 -10.82552 -10.70154 -10.29192 -10.09355 -9.86225 -9.07759 -8.30001 -6.32159 0.13116 0.23576 0.44409 1.28452 1.31646 1.41693 1.90724 2.22161 2.31411 2.77347 3.03372 3.30904 3.41294 3.82187 3.94411 4.05876 4.16571 4.19335 4.29504 4.30999 4.43676 4.50500 4.59441 4.68675 4.78574 4.79883 4.88801 4.90878 4.94418 5.00161 5.17845 5.26807 5.29855 5.30991 5.49838 5.58104 5.64357 5.85505 5.93140 6.26818 6.57584 6.72343 7.02927 7.16797 7.29902 8.87003 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.006093 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.953072 B = 4594.243235 C = 6461.864735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.184 4.184 3 C -0.032 4.032 4 C 0.086 3.914 5 N -0.532 5.532 6 C 0.173 3.827 7 C -0.512 4.512 8 H 0.035 0.965 9 C 0.008 3.992 10 N -0.947 5.947 11 Si 0.940 3.060 12 H -0.260 1.260 13 H -0.281 1.281 14 H -0.251 1.251 15 C 0.103 3.897 16 C 0.126 3.874 17 C -0.183 4.183 18 C -0.082 4.082 19 C -0.173 4.173 20 C 0.084 3.916 21 N -0.494 5.494 22 C 0.512 3.488 23 O -0.547 6.547 24 O -0.504 6.504 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.057 0.943 30 H 0.069 0.931 31 H -0.017 1.017 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 -2.859 -14.803 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.186 4.186 3 C -0.051 4.051 4 C -0.040 4.040 5 N -0.256 5.256 6 C 0.047 3.953 7 C -0.550 4.550 8 H 0.053 0.947 9 C -0.189 4.189 10 N -0.588 5.588 11 Si 0.763 3.237 12 H -0.185 1.185 13 H -0.206 1.206 14 H -0.174 1.174 15 C -0.025 4.025 16 C -0.012 4.012 17 C -0.204 4.204 18 C -0.107 4.107 19 C -0.192 4.192 20 C -0.073 4.073 21 N -0.204 5.204 22 C 0.360 3.640 23 O -0.440 6.440 24 O -0.317 6.317 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.001 0.999 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.149 0.851 37 H 0.177 0.823 38 H 0.186 0.814 39 H 0.197 0.803 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -11.965 -2.374 -14.015 18.580 hybrid contribution 2.672 -0.873 -0.412 2.841 sum -9.293 -3.247 -14.426 17.465 Atomic orbital electron populations 1.20685 0.86992 1.03888 1.03635 1.20918 0.98447 0.88389 1.10821 1.23889 0.95123 0.97999 0.88056 1.21280 0.93392 0.89273 1.00070 1.61780 1.19023 1.32673 1.12160 1.19965 0.84961 0.94716 0.95705 1.21222 0.94686 1.45376 0.93734 0.94678 1.25817 1.01572 0.94524 0.96996 1.70051 1.23240 1.48704 1.16847 0.85818 0.78356 0.79879 0.79668 1.18491 1.20639 1.17443 1.20996 1.02100 0.91101 0.88295 1.21074 0.90389 0.95663 0.94072 1.22176 0.98150 0.99108 1.00939 1.21937 1.00154 0.92309 0.96333 1.22496 0.94055 1.02035 1.00654 1.23299 0.98240 0.92321 0.93401 1.67406 1.32864 1.03474 1.16636 1.21441 0.85010 0.85647 0.71943 1.90958 1.17319 1.88277 1.47458 1.84560 1.45299 1.17320 1.84516 0.89737 0.90519 0.90223 0.83266 0.92577 0.91245 0.99938 0.94562 0.92485 0.88712 0.93404 0.85073 0.82280 0.81420 0.80288 0.71264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.81 71.24 0.70 -1.11 16 2 C -0.18 -5.02 5.99 -18.74 -0.11 -5.13 16 3 C -0.03 -1.03 8.69 24.53 0.21 -0.82 16 4 C 0.09 3.56 3.62 85.56 0.31 3.87 16 5 N -0.53 -23.01 4.36 -909.91 -3.97 -26.97 16 6 C 0.17 8.66 3.64 85.55 0.31 8.97 16 7 C -0.51 -30.86 8.96 25.60 0.23 -30.63 16 8 H 0.03 2.36 7.84 -2.91 -0.02 2.34 16 9 C 0.01 0.48 5.47 84.65 0.46 0.94 16 10 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 11 Si 0.94 45.05 27.40 68.60 1.88 46.93 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 14 H -0.25 -11.24 6.65 99.48 0.66 -10.58 16 15 C 0.10 3.65 5.11 85.56 0.44 4.09 16 16 C 0.13 4.38 5.70 42.56 0.24 4.62 16 17 C -0.18 -5.73 8.03 22.36 0.18 -5.55 16 18 C -0.08 -2.06 10.18 22.47 0.23 -1.83 16 19 C -0.17 -3.93 10.11 22.36 0.23 -3.70 16 20 C 0.08 2.24 11.18 84.67 0.95 3.19 16 21 N -0.49 -16.75 10.27 -183.89 -1.89 -18.64 16 22 C 0.51 14.91 8.05 70.10 0.56 15.47 16 23 O -0.55 -20.52 14.14 19.72 0.28 -20.24 16 24 O -0.50 -10.29 12.79 -57.11 -0.73 -11.03 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.33 7.79 -2.38 -0.02 1.31 16 27 H 0.08 1.37 8.06 -2.39 -0.02 1.35 16 28 H 0.15 4.57 8.04 -2.91 -0.02 4.55 16 29 H 0.06 2.32 5.95 -2.39 -0.01 2.30 16 30 H 0.07 3.48 6.92 -2.39 -0.02 3.47 16 31 H -0.02 -0.86 7.35 -2.39 -0.02 -0.88 16 32 H 0.04 1.76 4.78 -2.39 -0.01 1.75 16 33 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 34 H 0.09 3.04 7.43 -2.39 -0.02 3.02 16 35 H 0.05 1.59 8.02 -2.39 -0.02 1.57 16 36 H 0.13 3.90 8.00 -2.91 -0.02 3.88 16 37 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 38 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.43 5.07 9.11 -74.06 -0.67 4.40 16 Total: -1.00 -79.07 338.23 1.14 -77.93 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.34 Total: 20.32 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.94 Total: -7.61 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -5.56 Total: -106.30 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.45 Total: -31.27 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -79.07 1.14 -77.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825729737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.576 kcal (2) G-P(sol) polarization free energy of solvation -79.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds