Wall clock time and date at job start Tue Mar 31 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35623 * 119.99940 * 2 1 4 4 C 1.41551 * 120.00068 * 352.10858 * 3 2 1 5 5 O 1.21777 * 120.00096 * 353.88581 * 4 3 2 6 6 N 1.34780 * 119.99790 * 173.61268 * 4 3 2 7 7 C 1.46964 * 120.59515 * 353.71090 * 6 4 3 8 8 C 1.53810 * 108.39600 * 124.76060 * 7 6 4 9 9 N 1.46964 * 108.58071 * 49.63773 * 8 7 6 10 10 C 1.36938 * 120.59484 * 124.62552 * 9 8 7 11 11 H 1.07991 * 120.00180 * 213.78428 * 10 9 8 12 12 C 1.38822 * 119.99794 * 33.78844 * 10 9 8 13 13 N 1.31610 * 120.00067 * 16.42248 * 12 10 9 14 14 Si 1.86796 * 119.99543 * 196.42863 * 12 10 9 15 15 H 1.48498 * 109.47473 * 89.99609 * 14 12 10 16 16 H 1.48501 * 109.46794 * 209.99876 * 14 12 10 17 17 H 1.48504 * 109.47373 * 329.99746 * 14 12 10 18 18 C 1.46958 * 118.81212 * 304.64505 * 9 8 7 19 19 C 1.46964 * 120.59242 * 173.99296 * 6 4 3 20 20 C 1.41609 * 119.99906 * 180.02562 * 2 1 3 21 21 C 1.37949 * 126.10033 * 294.71412 * 20 2 1 22 22 C 1.40320 * 106.52684 * 179.85110 * 21 20 2 23 23 C 1.35159 * 107.20253 * 0.41511 * 22 21 20 24 24 O 1.34015 * 109.03295 * 359.73897 * 23 22 21 25 25 H 1.09004 * 109.47262 * 83.69920 * 1 2 3 26 26 H 1.08995 * 109.47364 * 203.69741 * 1 2 3 27 27 H 1.09003 * 109.47420 * 323.69769 * 1 2 3 28 28 H 1.07998 * 120.00106 * 172.10239 * 3 2 1 29 29 H 1.08999 * 109.61158 * 244.54347 * 7 6 4 30 30 H 1.08998 * 109.60872 * 5.05672 * 7 6 4 31 31 H 1.08999 * 109.74342 * 289.84689 * 8 7 6 32 32 H 1.08999 * 109.53361 * 169.30646 * 8 7 6 33 33 H 0.97006 * 120.00046 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.60956 * 295.48349 * 18 9 8 35 35 H 1.08998 * 109.61028 * 174.97402 * 18 9 8 36 36 H 1.09006 * 109.61045 * 354.94271 * 19 6 4 37 37 H 1.08999 * 109.60991 * 115.45538 * 19 6 4 38 38 H 1.07995 * 126.74218 * 359.96685 * 21 20 2 39 39 H 1.08002 * 126.40010 * 180.18584 * 22 21 20 40 40 H 1.07997 * 125.48380 * 179.70984 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 1.4874 2.3946 -0.1683 5 8 0.2968 2.3849 -0.4240 6 7 2.1396 3.5671 -0.0402 7 6 3.5389 3.5995 0.4080 8 6 4.3670 4.3609 -0.6410 9 7 3.6897 5.6302 -0.9410 10 6 4.3521 6.8215 -0.8100 11 1 3.8176 7.7044 -0.4920 12 6 5.7107 6.8943 -1.0860 13 7 6.2955 5.9343 -1.7704 14 14 6.7086 8.3548 -0.4857 15 1 7.2515 8.0619 0.8651 16 1 7.8300 8.6080 -1.4257 17 1 5.8376 9.5558 -0.4192 18 6 2.2888 5.5981 -1.3837 19 6 1.4624 4.8364 -0.3402 20 6 2.2150 -1.2264 -0.0005 21 6 2.2178 -2.1637 1.0116 22 6 3.0463 -3.2119 0.5826 23 6 3.5131 -2.8773 -0.6409 24 8 3.0120 -1.6840 -0.9886 25 1 -0.3634 0.1128 -1.0215 26 1 -0.3634 -0.9410 0.4130 27 1 -0.3634 0.8282 0.6084 28 1 3.2574 1.1790 0.1285 29 1 3.6035 4.1093 1.3692 30 1 3.9156 2.5813 0.5050 31 1 4.4469 3.7651 -1.5503 32 1 5.3620 4.5620 -0.2440 33 1 7.2449 5.9850 -1.9630 34 1 2.2207 5.0903 -2.3459 35 1 1.9113 6.6163 -1.4772 36 1 0.4674 4.6352 -0.7373 37 1 1.3825 5.4322 0.5691 38 1 1.6853 -2.1037 1.9492 39 1 3.2720 -4.1153 1.1296 40 1 4.1827 -3.4751 -1.2414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828303540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:55 Heat of formation + Delta-G solvation = 37.686107 kcal Electronic energy + Delta-G solvation = -22966.589865 eV Core-core repulsion = 19556.953664 eV Total energy + Delta-G solvation = -3409.636201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.64531 -39.95067 -37.10217 -35.08803 -33.86565 -33.07586 -31.50084 -30.28783 -29.04733 -28.14856 -26.58592 -24.04860 -23.25254 -22.55935 -21.80545 -20.78457 -19.57547 -18.40754 -17.43623 -17.03123 -16.17729 -16.14209 -15.28925 -15.13449 -14.76842 -14.52352 -13.74578 -13.64482 -13.42781 -13.26164 -13.15891 -13.09368 -13.02309 -12.62333 -12.52462 -12.20876 -11.86959 -11.47367 -11.24878 -10.84191 -10.73559 -10.49286 -10.27350 -10.13124 -10.07019 -9.83728 -9.48081 -9.22454 -8.59811 -8.43673 -8.14788 -6.65714 -5.87866 -3.37551 0.78392 1.61437 2.41273 2.98055 3.32577 3.40030 3.41177 3.54608 3.59510 4.42527 4.58703 4.78057 4.89089 4.91579 5.16393 5.28931 5.39805 5.44207 5.60586 5.63040 5.75297 5.82297 5.84678 5.86889 5.92626 6.06463 6.12547 6.19180 6.22404 6.30150 6.35733 6.45572 6.49912 6.80037 6.90734 6.93012 7.18867 7.37517 7.73024 7.90969 8.37620 8.53695 9.10437 9.71671 10.32561 11.19562 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.003756 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.265058 B = 7453.092136 C = 8383.581234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.019 3.981 3 C -0.183 4.183 4 C 0.540 3.460 5 O -0.556 6.556 6 N -0.590 5.590 7 C 0.077 3.923 8 C 0.161 3.839 9 N -0.590 5.590 10 C -0.262 4.262 11 H 0.065 0.935 12 C 0.010 3.990 13 N -0.898 5.898 14 Si 0.904 3.096 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.277 1.277 18 C 0.131 3.869 19 C 0.096 3.904 20 C 0.011 3.989 21 C -0.184 4.184 22 C -0.215 4.215 23 C -0.037 4.037 24 O -0.159 6.159 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.256 0.744 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -15.743 5.361 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.016 3.984 3 C -0.203 4.203 4 C 0.333 3.667 5 O -0.439 6.439 6 N -0.321 5.321 7 C -0.048 4.048 8 C 0.034 3.966 9 N -0.312 5.312 10 C -0.392 4.392 11 H 0.083 0.917 12 C -0.190 4.190 13 N -0.541 5.541 14 Si 0.733 3.267 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.203 1.203 18 C 0.004 3.996 19 C -0.028 4.028 20 C -0.039 4.039 21 C -0.203 4.203 22 C -0.234 4.234 23 C -0.106 4.106 24 O -0.054 6.054 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.152 0.848 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.856 -15.529 4.888 17.665 hybrid contribution 1.045 0.496 0.419 1.230 sum -5.811 -15.034 5.307 16.969 Atomic orbital electron populations 1.21066 0.88706 1.02391 1.04060 1.19138 0.95966 0.88306 0.94947 1.22323 1.01275 0.92524 1.04199 1.16908 0.86826 0.84305 0.78705 1.90754 1.14862 1.87688 1.50550 1.47997 1.13567 1.06008 1.64561 1.22849 0.80920 1.00956 1.00025 1.21166 0.95555 0.86023 0.93829 1.43916 1.07791 1.02799 1.76737 1.19155 0.91853 0.88337 1.39822 0.91704 1.25212 0.98629 0.97709 0.97450 1.70028 1.10750 1.34322 1.39007 0.86282 0.79836 0.82359 0.78212 1.21275 1.21682 1.20271 1.21329 0.86445 0.98046 0.93749 1.22218 0.96702 0.83912 0.99956 1.19702 0.98131 0.96823 0.89262 1.22185 1.03802 0.93956 1.00376 1.21718 1.02940 1.01612 0.97125 1.24241 1.02100 0.86212 0.98002 1.84204 1.49047 1.31230 1.40878 0.89801 0.92672 0.88636 0.84832 0.91564 0.90851 0.95565 0.89238 0.93457 0.95889 0.91468 0.89914 0.91944 0.83041 0.83198 0.77929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 8.41 36.00 0.30 -1.06 16 2 C 0.02 0.27 5.77 -104.27 -0.60 -0.34 16 3 C -0.18 -2.80 8.81 -39.25 -0.35 -3.14 16 4 C 0.54 9.59 7.32 -15.00 -0.11 9.48 16 5 O -0.56 -10.61 12.62 5.12 0.06 -10.55 16 6 N -0.59 -10.88 2.94 -175.64 -0.52 -11.40 16 7 C 0.08 1.39 6.52 -3.37 -0.02 1.37 16 8 C 0.16 3.66 5.49 -3.37 -0.02 3.65 16 9 N -0.59 -14.45 2.93 -171.77 -0.50 -14.96 16 10 C -0.26 -6.99 9.51 -15.06 -0.14 -7.13 16 11 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 12 C 0.01 0.27 4.88 -17.43 -0.09 0.18 16 13 N -0.90 -25.40 11.57 55.49 0.64 -24.76 16 14 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 C 0.13 2.78 6.67 -3.60 -0.02 2.75 16 19 C 0.10 1.78 6.58 -3.60 -0.02 1.76 16 20 C 0.01 0.14 6.34 -38.40 -0.24 -0.10 16 21 C -0.18 -2.01 10.90 -38.90 -0.42 -2.43 16 22 C -0.21 -2.03 10.87 -39.89 -0.43 -2.46 16 23 C -0.04 -0.35 12.06 29.64 0.36 0.00 16 24 O -0.16 -2.08 10.67 4.71 0.05 -2.03 16 25 H 0.08 1.14 7.99 -51.93 -0.41 0.72 16 26 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 27 H 0.10 1.35 6.27 -51.93 -0.33 1.02 16 28 H 0.13 1.93 5.83 -52.49 -0.31 1.62 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.14 5.31 -51.93 -0.28 0.87 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 2.22 6.40 -51.93 -0.33 1.89 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 36 H 0.08 1.48 7.03 -51.93 -0.36 1.12 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.20 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -30.98 329.52 -7.50 -38.48 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.36 Total: 1.71 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.81 Total: 2.52 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.38 Total: -51.12 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.11 Total: -12.58 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.98 -7.50 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828303540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.162 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds