Wall clock time and date at job start Tue Mar 31 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35623 * 119.99940 * 2 1 4 4 C 1.41551 * 120.00068 * 352.10858 * 3 2 1 5 5 O 1.21777 * 120.00096 * 353.88581 * 4 3 2 6 6 N 1.34780 * 119.99790 * 173.61268 * 4 3 2 7 7 C 1.46964 * 120.59515 * 353.71090 * 6 4 3 8 8 C 1.53810 * 108.39600 * 124.76060 * 7 6 4 9 9 N 1.46964 * 108.58071 * 49.63773 * 8 7 6 10 10 C 1.36938 * 120.59484 * 124.62552 * 9 8 7 11 11 H 1.07991 * 120.00180 * 213.78428 * 10 9 8 12 12 C 1.38822 * 119.99794 * 33.78844 * 10 9 8 13 13 N 1.31610 * 120.00067 * 16.42248 * 12 10 9 14 14 Si 1.86796 * 119.99543 * 196.42863 * 12 10 9 15 15 H 1.48498 * 109.47473 * 89.99609 * 14 12 10 16 16 H 1.48501 * 109.46794 * 209.99876 * 14 12 10 17 17 H 1.48504 * 109.47373 * 329.99746 * 14 12 10 18 18 C 1.46958 * 118.81212 * 304.64505 * 9 8 7 19 19 C 1.46964 * 120.59242 * 173.99296 * 6 4 3 20 20 C 1.41609 * 119.99906 * 180.02562 * 2 1 3 21 21 C 1.37949 * 126.10033 * 294.71412 * 20 2 1 22 22 C 1.40320 * 106.52684 * 179.85110 * 21 20 2 23 23 C 1.35159 * 107.20253 * 0.41511 * 22 21 20 24 24 O 1.34015 * 109.03295 * 359.73897 * 23 22 21 25 25 H 1.09004 * 109.47262 * 83.69920 * 1 2 3 26 26 H 1.08995 * 109.47364 * 203.69741 * 1 2 3 27 27 H 1.09003 * 109.47420 * 323.69769 * 1 2 3 28 28 H 1.07998 * 120.00106 * 172.10239 * 3 2 1 29 29 H 1.08999 * 109.61158 * 244.54347 * 7 6 4 30 30 H 1.08998 * 109.60872 * 5.05672 * 7 6 4 31 31 H 1.08999 * 109.74342 * 289.84689 * 8 7 6 32 32 H 1.08999 * 109.53361 * 169.30646 * 8 7 6 33 33 H 0.97006 * 120.00046 * 180.02562 * 13 12 10 34 34 H 1.09007 * 109.60956 * 295.48349 * 18 9 8 35 35 H 1.08998 * 109.61028 * 174.97402 * 18 9 8 36 36 H 1.09006 * 109.61045 * 354.94271 * 19 6 4 37 37 H 1.08999 * 109.60991 * 115.45538 * 19 6 4 38 38 H 1.07995 * 126.74218 * 359.96685 * 21 20 2 39 39 H 1.08002 * 126.40010 * 180.18584 * 22 21 20 40 40 H 1.07997 * 125.48380 * 179.70984 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 1.4874 2.3946 -0.1683 5 8 0.2968 2.3849 -0.4240 6 7 2.1396 3.5671 -0.0402 7 6 3.5389 3.5995 0.4080 8 6 4.3670 4.3609 -0.6410 9 7 3.6897 5.6302 -0.9410 10 6 4.3521 6.8215 -0.8100 11 1 3.8176 7.7044 -0.4920 12 6 5.7107 6.8943 -1.0860 13 7 6.2955 5.9343 -1.7704 14 14 6.7086 8.3548 -0.4857 15 1 7.2515 8.0619 0.8651 16 1 7.8300 8.6080 -1.4257 17 1 5.8376 9.5558 -0.4192 18 6 2.2888 5.5981 -1.3837 19 6 1.4624 4.8364 -0.3402 20 6 2.2150 -1.2264 -0.0005 21 6 2.2178 -2.1637 1.0116 22 6 3.0463 -3.2119 0.5826 23 6 3.5131 -2.8773 -0.6409 24 8 3.0120 -1.6840 -0.9886 25 1 -0.3634 0.1128 -1.0215 26 1 -0.3634 -0.9410 0.4130 27 1 -0.3634 0.8282 0.6084 28 1 3.2574 1.1790 0.1285 29 1 3.6035 4.1093 1.3692 30 1 3.9156 2.5813 0.5050 31 1 4.4469 3.7651 -1.5503 32 1 5.3620 4.5620 -0.2440 33 1 7.2449 5.9850 -1.9630 34 1 2.2207 5.0903 -2.3459 35 1 1.9113 6.6163 -1.4772 36 1 0.4674 4.6352 -0.7373 37 1 1.3825 5.4322 0.5691 38 1 1.6853 -2.1037 1.9492 39 1 3.2720 -4.1153 1.1296 40 1 4.1827 -3.4751 -1.2414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828303540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:55 Heat of formation + Delta-G solvation = 19.854827 kcal Electronic energy + Delta-G solvation = -22967.363087 eV Core-core repulsion = 19556.953664 eV Total energy + Delta-G solvation = -3410.409423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.48855 -41.35199 -38.69964 -36.28724 -35.57546 -33.90523 -33.31260 -31.97691 -30.11647 -29.34960 -28.19392 -25.63189 -24.75847 -23.97432 -22.60076 -22.21702 -20.81720 -19.82225 -18.80642 -18.28314 -17.66302 -17.13364 -16.85693 -16.47444 -16.32606 -15.76175 -15.46514 -15.25392 -15.04982 -14.80177 -14.50887 -13.99198 -13.85520 -13.79734 -13.47616 -13.36938 -13.30113 -13.28193 -12.77620 -12.62033 -12.45037 -12.22454 -12.05571 -11.86019 -11.64193 -10.94598 -10.72973 -10.60402 -10.47504 -9.76402 -9.25571 -8.60875 -7.90483 -5.44852 -0.31105 0.72012 1.48452 1.49555 1.58633 1.65345 2.00304 2.15426 2.38815 2.50411 3.24134 3.55428 3.61235 3.82327 3.99870 4.07815 4.19896 4.22413 4.28622 4.35112 4.46230 4.52092 4.64311 4.73272 4.76227 4.80515 4.82399 4.92658 4.97836 5.05499 5.09027 5.17168 5.21967 5.41737 5.48803 5.57760 5.61676 5.64364 6.09818 6.36505 6.47802 7.09505 7.13961 7.75264 8.32952 9.14226 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.003756 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.265058 B = 7453.092136 C = 8383.581234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.048 3.952 3 C -0.213 4.213 4 C 0.543 3.457 5 O -0.573 6.573 6 N -0.600 5.600 7 C 0.094 3.906 8 C 0.168 3.832 9 N -0.607 5.607 10 C -0.273 4.273 11 H 0.067 0.933 12 C -0.039 4.039 13 N -0.931 5.931 14 Si 0.969 3.031 15 H -0.281 1.281 16 H -0.296 1.296 17 H -0.269 1.269 18 C 0.132 3.868 19 C 0.108 3.892 20 C -0.033 4.033 21 C -0.171 4.171 22 C -0.221 4.221 23 C -0.032 4.032 24 O -0.184 6.184 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.139 0.861 29 H 0.073 0.927 30 H 0.101 0.899 31 H -0.001 1.001 32 H 0.065 0.935 33 H 0.253 0.747 34 H 0.006 0.994 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.169 0.831 39 H 0.180 0.820 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 -17.421 6.763 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.045 3.955 3 C -0.233 4.233 4 C 0.337 3.663 5 O -0.457 6.457 6 N -0.331 5.331 7 C -0.030 4.030 8 C 0.042 3.958 9 N -0.331 5.331 10 C -0.402 4.402 11 H 0.085 0.915 12 C -0.236 4.236 13 N -0.576 5.576 14 Si 0.797 3.203 15 H -0.207 1.207 16 H -0.223 1.223 17 H -0.193 1.193 18 C 0.005 3.995 19 C -0.016 4.016 20 C -0.082 4.082 21 C -0.190 4.190 22 C -0.239 4.239 23 C -0.100 4.100 24 O -0.080 6.080 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.156 0.844 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.017 0.983 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.187 0.813 39 H 0.197 0.803 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.127 -17.216 6.306 19.671 hybrid contribution 1.075 0.834 -0.064 1.362 sum -6.052 -16.382 6.242 18.546 Atomic orbital electron populations 1.21052 0.88270 1.03293 1.03442 1.19317 0.96387 0.88480 0.91288 1.22181 1.01443 0.91977 1.07742 1.17217 0.86670 0.84641 0.77785 1.90742 1.15648 1.87932 1.51416 1.48035 1.13547 1.06245 1.65247 1.22602 0.80246 1.01853 0.98276 1.20983 0.95344 0.85666 0.93847 1.44187 1.08871 1.02787 1.77266 1.19470 0.92349 0.89213 1.39216 0.91541 1.25952 0.99583 1.00311 0.97759 1.70173 1.10678 1.36244 1.40480 0.85251 0.78045 0.79538 0.77458 1.20725 1.22250 1.19347 1.21392 0.85405 0.98796 0.93875 1.22020 0.96282 0.83976 0.99356 1.19681 1.00357 0.97469 0.90731 1.22545 1.02938 0.93305 1.00205 1.22121 1.02387 1.02232 0.97198 1.25110 1.01237 0.85083 0.98557 1.84185 1.49561 1.32748 1.41486 0.90515 0.90046 0.89858 0.84375 0.90866 0.88099 0.98284 0.91673 0.93849 0.97561 0.90808 0.89204 0.91038 0.81322 0.80305 0.74450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.58 8.41 71.23 0.60 -1.98 16 2 C 0.05 1.28 5.77 -19.64 -0.11 1.17 16 3 C -0.21 -6.43 8.81 22.48 0.20 -6.23 16 4 C 0.54 19.12 7.32 85.06 0.62 19.75 16 5 O -0.57 -21.76 12.62 -4.59 -0.06 -21.82 16 6 N -0.60 -21.96 2.94 -827.79 -2.43 -24.39 16 7 C 0.09 3.40 6.52 86.56 0.56 3.97 16 8 C 0.17 7.86 5.49 86.56 0.48 8.34 16 9 N -0.61 -30.34 2.93 -697.36 -2.05 -32.39 16 10 C -0.27 -14.69 9.51 84.04 0.80 -13.89 16 11 H 0.07 3.49 7.88 -2.92 -0.02 3.47 16 12 C -0.04 -2.14 4.88 84.87 0.41 -1.73 16 13 N -0.93 -53.99 11.57 21.65 0.25 -53.74 16 14 Si 0.97 43.61 29.58 68.60 2.03 45.63 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 16 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 C 0.13 5.65 6.67 86.42 0.58 6.23 16 19 C 0.11 3.96 6.58 86.42 0.57 4.53 16 20 C -0.03 -0.81 6.34 23.03 0.15 -0.67 16 21 C -0.17 -3.25 10.90 22.71 0.25 -3.01 16 22 C -0.22 -3.40 10.87 22.07 0.24 -3.16 16 23 C -0.03 -0.52 12.06 67.11 0.81 0.28 16 24 O -0.18 -4.54 10.67 -6.05 -0.06 -4.61 16 25 H 0.08 2.04 7.99 -2.39 -0.02 2.02 16 26 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 27 H 0.08 2.29 6.27 -2.39 -0.01 2.27 16 28 H 0.14 3.93 5.83 -2.91 -0.02 3.92 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.10 3.08 5.31 -2.39 -0.01 3.07 16 31 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.06 3.34 6.40 -2.39 -0.02 3.33 16 33 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 34 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 35 H 0.07 3.01 7.93 -2.39 -0.02 2.99 16 36 H 0.09 3.18 7.03 -2.38 -0.02 3.17 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.24 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -67.57 329.52 4.87 -62.70 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.05 Total: 15.01 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.15 Total: 13.61 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -4.23 Total: -110.52 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.12 Total: -26.43 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -67.57 4.87 -62.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828303540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.553 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds