Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36682 * 125.68753 * 2 1 4 4 C 1.43194 * 125.88494 * 359.95685 * 3 2 1 5 5 N 3.54653 * 89.76780 * 359.97435 * 2 1 3 6 6 C 1.38098 * 108.22901 * 179.97438 * 3 2 1 7 7 C 1.39325 * 107.53082 * 359.97438 * 6 3 2 8 8 C 1.37126 * 125.68499 * 179.97438 * 2 1 3 9 9 C 1.46885 * 125.93269 * 0.04109 * 8 2 1 10 10 O 1.21571 * 120.00031 * 180.02562 * 9 8 2 11 11 O 1.34854 * 120.00139 * 359.97438 * 9 8 2 12 12 C 1.45199 * 117.00239 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47049 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47133 * 300.00055 * 13 12 11 15 15 C 1.53001 * 109.46773 * 60.00449 * 13 12 11 16 16 C 1.53001 * 109.46776 * 180.02562 * 13 12 11 17 17 C 1.50704 * 109.46856 * 180.02562 * 16 13 12 18 18 H 1.08000 * 119.99768 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99711 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00385 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47118 * 60.00338 * 21 19 17 23 23 H 1.48497 * 109.47353 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47292 * 300.00194 * 21 19 17 25 25 H 1.08993 * 109.46913 * 89.97305 * 1 2 3 26 26 H 1.08997 * 109.47183 * 209.97912 * 1 2 3 27 27 H 1.09003 * 109.46437 * 329.97458 * 1 2 3 28 28 H 1.08000 * 126.23946 * 180.02562 * 6 3 2 29 29 H 1.08000 * 126.26239 * 179.73475 * 7 6 3 30 30 H 1.08992 * 109.47191 * 299.99920 * 12 11 9 31 31 H 1.08997 * 109.46808 * 60.00143 * 12 11 9 32 32 H 1.08995 * 109.47400 * 60.00372 * 14 13 12 33 33 H 1.09006 * 109.47137 * 179.97438 * 14 13 12 34 34 H 1.09001 * 109.47224 * 299.99750 * 14 13 12 35 35 H 1.08992 * 109.47484 * 59.99812 * 15 13 12 36 36 H 1.09006 * 109.46885 * 180.02562 * 15 13 12 37 37 H 1.09005 * 109.47204 * 299.99124 * 15 13 12 38 38 H 1.09000 * 109.47157 * 299.99798 * 16 13 12 39 39 H 1.08997 * 109.46964 * 60.00472 * 16 13 12 40 40 H 0.96997 * 119.99941 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2624 1.1101 0.0000 4 6 1.8098 2.4687 -0.0009 5 7 1.4507 3.5465 -0.0016 6 6 3.5798 0.6958 0.0006 7 6 3.5815 -0.6974 0.0015 8 6 2.2650 -1.1138 0.0005 9 6 1.8018 -2.5077 0.0003 10 8 2.6092 -3.4165 0.0012 11 8 0.4808 -2.7793 0.0000 12 6 0.0957 -4.1793 0.0004 13 6 -1.4305 -4.2883 0.0007 14 6 -1.9903 -3.6050 1.2499 15 6 -1.9907 -3.6056 -1.2487 16 6 -1.8363 -5.7635 0.0017 17 6 -3.3395 -5.8710 0.0014 18 1 -3.9447 -4.9765 0.0001 19 6 -3.9419 -7.1111 0.0016 20 7 -3.2048 -8.2003 0.0027 21 14 -5.8052 -7.2443 0.0005 22 1 -6.3480 -6.5821 -1.2127 23 1 -6.1991 -8.6761 0.0016 24 1 -6.3497 -6.5807 1.2122 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3632 0.8898 0.5143 28 1 4.4502 1.3352 0.0011 29 1 4.4532 -1.3351 -0.0018 30 1 0.4949 -4.6661 -0.8893 31 1 0.4945 -4.6655 0.8906 32 1 -1.7013 -2.5541 1.2496 33 1 -3.0777 -3.6823 1.2499 34 1 -1.5912 -4.0914 2.1399 35 1 -1.5918 -4.0924 -2.1386 36 1 -3.0780 -3.6829 -1.2483 37 1 -1.7016 -2.5545 -1.2489 38 1 -1.4374 -6.2507 -0.8880 39 1 -1.4371 -6.2495 0.8920 40 1 -3.6287 -9.0728 0.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835386036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = -22.533291 kcal Electronic energy + Delta-G solvation = -22697.900439 eV Core-core repulsion = 19285.652930 eV Total energy + Delta-G solvation = -3412.247510 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.88440 -39.97132 -37.32212 -36.82459 -35.56407 -33.37053 -32.40862 -30.51075 -27.46028 -26.99970 -26.64929 -26.54267 -24.42165 -22.93499 -21.79560 -20.22999 -18.75326 -18.35317 -17.79403 -16.58726 -16.50352 -16.08341 -15.65837 -14.84035 -14.61756 -14.25911 -13.89508 -13.87578 -13.71993 -13.47266 -13.29946 -13.20191 -12.85264 -12.74582 -12.61112 -12.30137 -12.12270 -12.09722 -11.39292 -11.03916 -10.92854 -10.80883 -10.70436 -10.43962 -10.43346 -10.30411 -9.85563 -9.32470 -9.27959 -9.04031 -8.74322 -8.42483 -6.06783 -4.08563 0.55407 1.72759 1.74759 2.53767 2.68123 2.92452 3.03650 3.28173 3.33859 3.35063 3.42398 4.37171 4.39550 4.52809 4.88031 4.93859 5.00864 5.28514 5.30500 5.38896 5.40269 5.52921 5.65540 5.70047 5.90944 6.06565 6.16531 6.23195 6.34371 6.39167 6.40592 6.49853 6.58491 6.64214 6.98518 6.99593 7.00134 7.02414 7.52959 7.64184 7.72592 7.90955 8.31870 8.95431 9.54974 11.04720 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028515 B = 0.003300 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.701690 B = 8483.370801 C = 9263.403322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.390 5.390 3 C 0.087 3.913 4 C 0.279 3.721 5 N -0.398 5.398 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.012 3.988 9 C 0.529 3.471 10 O -0.491 6.491 11 O -0.353 6.353 12 C 0.079 3.921 13 C -0.059 4.059 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.513 4.513 18 H 0.060 0.940 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 16.037 0.049 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.064 5.064 3 C -0.031 4.031 4 C -0.037 4.037 5 N -0.075 5.075 6 C -0.157 4.157 7 C -0.137 4.137 8 C -0.104 4.104 9 C 0.372 3.628 10 O -0.379 6.379 11 O -0.269 6.269 12 C 0.007 3.993 13 C -0.059 4.059 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.002 4.002 17 C -0.551 4.551 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.108 0.892 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.178 0.822 29 H 0.181 0.819 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.935 17.134 0.048 19.806 hybrid contribution -0.928 -0.816 -0.023 1.235 sum 9.007 16.319 0.025 18.640 Atomic orbital electron populations 1.22615 0.74578 1.06220 1.05258 1.44084 1.07416 1.04024 1.50876 1.15693 0.90411 0.80565 1.16450 1.24267 0.94232 0.91471 0.93683 1.81334 1.05598 1.10982 1.09564 1.21205 0.93805 0.94826 1.05904 1.21269 0.94472 0.94460 1.03495 1.19761 0.90691 0.84018 1.15899 1.19767 0.81920 0.87225 0.73877 1.90913 1.55577 1.45684 1.45682 1.86557 1.23740 1.33259 1.83378 1.23612 0.97557 0.75762 1.02391 1.20839 0.88460 1.00586 0.95987 1.21733 1.02234 0.97621 0.96698 1.21725 1.02177 0.97745 0.96655 1.19119 0.96772 0.86685 0.97577 1.21090 0.91188 0.92048 1.50737 0.92160 1.25005 0.98025 0.95976 0.95397 1.69947 1.35208 0.97655 1.50550 0.86682 0.85896 0.76987 0.78589 1.20261 1.21349 1.20263 0.89197 0.86495 0.89560 0.82223 0.81873 0.91194 0.91211 0.94611 0.91429 0.93568 0.93603 0.91476 0.94500 0.96266 0.96262 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 10.34 59.85 0.62 1.06 16 2 N -0.39 -3.78 3.18 -117.23 -0.37 -4.15 16 3 C 0.09 0.77 6.72 -83.83 -0.56 0.21 16 4 C 0.28 2.67 15.13 -22.47 -0.34 2.33 16 5 N -0.40 -4.53 18.54 41.84 0.78 -3.75 16 6 C -0.13 -0.98 10.80 -39.23 -0.42 -1.40 16 7 C -0.11 -1.02 10.60 -39.23 -0.42 -1.43 16 8 C 0.01 0.13 6.87 -82.06 -0.56 -0.43 16 9 C 0.53 7.34 7.93 34.23 0.27 7.61 16 10 O -0.49 -8.07 16.67 -19.32 -0.32 -8.39 16 11 O -0.35 -4.99 6.26 -40.91 -0.26 -5.24 16 12 C 0.08 1.31 4.33 37.16 0.16 1.48 16 13 C -0.06 -1.07 0.61 -154.51 -0.09 -1.17 16 14 C -0.13 -2.13 8.08 37.16 0.30 -1.83 16 15 C -0.13 -2.14 8.08 37.16 0.30 -1.84 16 16 C 0.04 0.84 4.04 -27.88 -0.11 0.72 16 17 C -0.51 -13.20 7.65 -34.44 -0.26 -13.46 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 21 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.12 1.09 5.57 -51.93 -0.29 0.80 16 27 H 0.09 0.59 7.76 -51.93 -0.40 0.19 16 28 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 29 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.03 0.50 7.14 -51.93 -0.37 0.13 16 33 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 37 H 0.04 0.52 7.68 -51.93 -0.40 0.12 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -29.81 343.89 -5.89 -35.70 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.39 Total: -3.30 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.22 Total: -6.70 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 1.14 Total: -32.94 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.58 Total: -13.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.81 -5.89 -35.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.163 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds