Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36682 * 125.68753 * 2 1 4 4 C 1.43194 * 125.88494 * 359.95685 * 3 2 1 5 5 N 3.54653 * 89.76780 * 359.97435 * 2 1 3 6 6 C 1.38098 * 108.22901 * 179.97438 * 3 2 1 7 7 C 1.39325 * 107.53082 * 359.97438 * 6 3 2 8 8 C 1.37126 * 125.68499 * 179.97438 * 2 1 3 9 9 C 1.46885 * 125.93269 * 0.04109 * 8 2 1 10 10 O 1.21571 * 120.00031 * 180.02562 * 9 8 2 11 11 O 1.34854 * 120.00139 * 359.97438 * 9 8 2 12 12 C 1.45199 * 117.00239 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47049 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47133 * 300.00055 * 13 12 11 15 15 C 1.53001 * 109.46773 * 60.00449 * 13 12 11 16 16 C 1.53001 * 109.46776 * 180.02562 * 13 12 11 17 17 C 1.50704 * 109.46856 * 180.02562 * 16 13 12 18 18 H 1.08000 * 119.99768 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99711 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00385 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47118 * 60.00338 * 21 19 17 23 23 H 1.48497 * 109.47353 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47292 * 300.00194 * 21 19 17 25 25 H 1.08993 * 109.46913 * 89.97305 * 1 2 3 26 26 H 1.08997 * 109.47183 * 209.97912 * 1 2 3 27 27 H 1.09003 * 109.46437 * 329.97458 * 1 2 3 28 28 H 1.08000 * 126.23946 * 180.02562 * 6 3 2 29 29 H 1.08000 * 126.26239 * 179.73475 * 7 6 3 30 30 H 1.08992 * 109.47191 * 299.99920 * 12 11 9 31 31 H 1.08997 * 109.46808 * 60.00143 * 12 11 9 32 32 H 1.08995 * 109.47400 * 60.00372 * 14 13 12 33 33 H 1.09006 * 109.47137 * 179.97438 * 14 13 12 34 34 H 1.09001 * 109.47224 * 299.99750 * 14 13 12 35 35 H 1.08992 * 109.47484 * 59.99812 * 15 13 12 36 36 H 1.09006 * 109.46885 * 180.02562 * 15 13 12 37 37 H 1.09005 * 109.47204 * 299.99124 * 15 13 12 38 38 H 1.09000 * 109.47157 * 299.99798 * 16 13 12 39 39 H 1.08997 * 109.46964 * 60.00472 * 16 13 12 40 40 H 0.96997 * 119.99941 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2624 1.1101 0.0000 4 6 1.8098 2.4687 -0.0009 5 7 1.4507 3.5465 -0.0016 6 6 3.5798 0.6958 0.0006 7 6 3.5815 -0.6974 0.0015 8 6 2.2650 -1.1138 0.0005 9 6 1.8018 -2.5077 0.0003 10 8 2.6092 -3.4165 0.0012 11 8 0.4808 -2.7793 0.0000 12 6 0.0957 -4.1793 0.0004 13 6 -1.4305 -4.2883 0.0007 14 6 -1.9903 -3.6050 1.2499 15 6 -1.9907 -3.6056 -1.2487 16 6 -1.8363 -5.7635 0.0017 17 6 -3.3395 -5.8710 0.0014 18 1 -3.9447 -4.9765 0.0001 19 6 -3.9419 -7.1111 0.0016 20 7 -3.2048 -8.2003 0.0027 21 14 -5.8052 -7.2443 0.0005 22 1 -6.3480 -6.5821 -1.2127 23 1 -6.1991 -8.6761 0.0016 24 1 -6.3497 -6.5807 1.2122 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3632 0.8898 0.5143 28 1 4.4502 1.3352 0.0011 29 1 4.4532 -1.3351 -0.0018 30 1 0.4949 -4.6661 -0.8893 31 1 0.4945 -4.6655 0.8906 32 1 -1.7013 -2.5541 1.2496 33 1 -3.0777 -3.6823 1.2499 34 1 -1.5912 -4.0914 2.1399 35 1 -1.5918 -4.0924 -2.1386 36 1 -3.0780 -3.6829 -1.2483 37 1 -1.7016 -2.5545 -1.2489 38 1 -1.4374 -6.2507 -0.8880 39 1 -1.4371 -6.2495 0.8920 40 1 -3.6287 -9.0728 0.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835386036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = -37.336539 kcal Electronic energy + Delta-G solvation = -22698.542356 eV Core-core repulsion = 19285.652930 eV Total energy + Delta-G solvation = -3412.889427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.66873 -41.10397 -38.71128 -37.64580 -36.93243 -34.41355 -34.04352 -31.35508 -29.28298 -28.01562 -27.94745 -27.67593 -25.65997 -24.54581 -22.63163 -21.18140 -19.88637 -19.42038 -18.87081 -18.32586 -17.64655 -17.39883 -16.54327 -16.51833 -15.68007 -15.33521 -15.21791 -14.80759 -14.58575 -14.56165 -14.44423 -14.18862 -14.05860 -13.95749 -13.75357 -13.45328 -13.18371 -12.99585 -12.91223 -12.74036 -12.64945 -12.29639 -12.27081 -12.01640 -11.86158 -11.85200 -11.36260 -11.04045 -10.89577 -10.50800 -9.94567 -9.51991 -8.14756 -6.22246 -0.27671 0.95875 0.96930 1.43218 1.45000 1.51071 1.54072 1.85924 1.98973 2.32107 2.44600 2.68632 3.20226 3.49280 3.76627 3.93254 3.96460 4.13822 4.22940 4.31320 4.39503 4.51217 4.61578 4.66493 4.79142 4.85755 5.02407 5.06208 5.12485 5.14918 5.33541 5.42767 5.47461 5.48935 5.52932 5.54909 5.68347 5.74964 5.76992 5.88830 6.25307 6.28941 6.61299 6.91954 7.45533 8.97591 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028515 B = 0.003300 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.701690 B = 8483.370801 C = 9263.403322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.392 5.392 3 C 0.090 3.910 4 C 0.301 3.699 5 N -0.428 5.428 6 C -0.113 4.113 7 C -0.104 4.104 8 C -0.012 4.012 9 C 0.531 3.469 10 O -0.524 6.524 11 O -0.342 6.342 12 C 0.090 3.910 13 C -0.053 4.053 14 C -0.120 4.120 15 C -0.120 4.120 16 C 0.040 3.960 17 C -0.515 4.515 18 H 0.072 0.928 19 C -0.002 4.002 20 N -0.937 5.937 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.267 1.267 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.193 0.807 29 H 0.175 0.825 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.070 0.930 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.806 18.723 0.023 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.066 5.066 3 C -0.028 4.028 4 C -0.014 4.014 5 N -0.105 5.105 6 C -0.141 4.141 7 C -0.129 4.129 8 C -0.127 4.127 9 C 0.377 3.623 10 O -0.413 6.413 11 O -0.258 6.258 12 C 0.017 3.983 13 C -0.053 4.053 14 C -0.177 4.177 15 C -0.177 4.177 16 C 0.002 3.998 17 C -0.553 4.553 18 H 0.090 0.910 19 C -0.199 4.199 20 N -0.578 5.578 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.217 1.217 24 H -0.192 1.192 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.210 0.790 29 H 0.192 0.808 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.990 19.853 0.022 22.225 hybrid contribution -0.849 -1.579 -0.014 1.793 sum 9.140 18.274 0.008 20.433 Atomic orbital electron populations 1.22726 0.73987 1.06478 1.05938 1.44142 1.07882 1.03740 1.50878 1.15797 0.90854 0.80003 1.16140 1.24174 0.93306 0.91194 0.92726 1.81372 1.06578 1.11936 1.10640 1.21581 0.94249 0.94303 1.03927 1.21551 0.93990 0.95363 1.02023 1.19531 0.91659 0.82866 1.18664 1.20185 0.81142 0.88244 0.72768 1.90901 1.56020 1.46921 1.47437 1.86546 1.24502 1.31206 1.83585 1.23194 0.96286 0.77239 1.01600 1.20618 0.89828 0.97198 0.97701 1.21670 1.01184 0.99450 0.95418 1.21660 1.01134 0.99522 0.95391 1.18981 0.95873 0.90157 0.94742 1.21517 0.92365 0.92326 1.49044 0.90969 1.25902 1.02800 0.95826 0.95401 1.70098 1.37183 0.98148 1.52399 0.85624 0.80268 0.76753 0.79162 1.19187 1.21698 1.19188 0.88317 0.87428 0.88077 0.79011 0.80797 0.92114 0.92101 0.91177 0.92659 0.94331 0.94385 0.92695 0.91125 0.99174 0.99150 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.34 127.77 1.32 2.00 16 2 N -0.39 -6.60 3.18 -524.80 -1.67 -8.26 16 3 C 0.09 1.32 6.72 39.60 0.27 1.59 16 4 C 0.30 4.94 15.13 88.33 1.34 6.27 16 5 N -0.43 -8.81 18.54 19.00 0.35 -8.46 16 6 C -0.11 -1.30 10.80 22.50 0.24 -1.06 16 7 C -0.10 -1.61 10.60 22.50 0.24 -1.37 16 8 C -0.01 -0.25 6.87 40.54 0.28 0.03 16 9 C 0.53 14.28 7.93 70.09 0.56 14.83 16 10 O -0.52 -17.16 16.67 19.60 0.33 -16.84 16 11 O -0.34 -9.30 6.26 -57.67 -0.36 -9.67 16 12 C 0.09 3.01 4.33 71.98 0.31 3.33 16 13 C -0.05 -1.95 0.61 -52.18 -0.03 -1.98 16 14 C -0.12 -3.95 8.08 71.98 0.58 -3.36 16 15 C -0.12 -3.95 8.08 71.98 0.58 -3.37 16 16 C 0.04 1.94 4.04 29.85 0.12 2.06 16 17 C -0.51 -26.85 7.65 25.60 0.20 -26.65 16 18 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.94 -55.70 13.29 21.45 0.28 -55.42 16 21 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.11 1.72 5.57 -2.39 -0.01 1.71 16 27 H 0.10 1.10 7.76 -2.39 -0.02 1.08 16 28 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 29 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 1.81 7.14 -2.39 -0.02 1.79 16 33 H 0.05 1.95 6.62 -2.38 -0.02 1.93 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.94 6.62 -2.38 -0.02 1.92 16 37 H 0.07 1.84 7.68 -2.38 -0.02 1.82 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -65.72 343.89 8.47 -57.24 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.05 Total: 4.05 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 6.46 Total: -7.34 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.03 Total: -72.14 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.03 Total: -26.50 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -65.72 8.47 -57.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.905 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds